Wall clock time and date at job start Tue Mar 31 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46714 * 2 1 4 4 H 1.08992 * 109.47454 * 304.99714 * 3 2 1 5 5 C 1.53005 * 109.46692 * 184.99838 * 3 2 1 6 6 O 1.42896 * 109.47506 * 65.00065 * 3 2 1 7 7 C 1.35970 * 117.00545 * 204.04628 * 6 3 2 8 8 C 1.38712 * 119.99321 * 184.68056 * 7 6 3 9 9 C 1.38097 * 120.02105 * 180.25331 * 8 7 6 10 10 C 1.38834 * 119.97814 * 359.49731 * 9 8 7 11 11 N 1.40150 * 120.00973 * 180.27045 * 10 9 8 12 12 C 1.34781 * 119.99724 * 144.80408 * 11 10 9 13 13 O 1.21583 * 120.00142 * 4.20162 * 12 11 10 14 14 N 1.34776 * 119.99796 * 184.19566 * 12 11 10 15 15 C 1.46506 * 119.99776 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46965 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00266 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99992 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99755 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46905 * 90.00162 * 20 18 16 22 22 H 1.48503 * 109.46727 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47346 * 330.00203 * 20 18 16 24 24 C 1.38828 * 119.97786 * 0.25463 * 10 9 8 25 25 C 1.38097 * 119.98210 * 359.97438 * 24 10 9 26 26 H 1.08996 * 109.47556 * 300.00112 * 1 2 3 27 27 H 1.09002 * 109.47240 * 60.00056 * 1 2 3 28 28 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47009 * 240.00402 * 2 1 3 30 30 H 1.08990 * 109.46860 * 119.99735 * 2 1 3 31 31 H 1.08998 * 109.47318 * 60.00301 * 5 3 2 32 32 H 1.08999 * 109.46567 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.46792 * 299.99714 * 5 3 2 34 34 H 1.08009 * 119.98865 * 0.02987 * 8 7 6 35 35 H 1.08001 * 120.01236 * 179.77363 * 9 8 7 36 36 H 0.96996 * 120.00876 * 324.81106 * 11 10 9 37 37 H 0.97001 * 120.00751 * 0.02562 * 14 12 11 38 38 H 1.09008 * 109.46932 * 300.00063 * 15 14 12 39 39 H 1.08996 * 109.47180 * 59.99857 * 15 14 12 40 40 H 0.97004 * 120.00031 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.01313 * 180.02562 * 24 10 9 42 42 H 1.08004 * 119.99535 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.5713 3.4381 1.2056 8 6 1.3046 4.1285 2.3788 9 6 1.2073 5.5060 2.3629 10 6 1.3869 6.2004 1.1742 11 7 1.2939 7.5988 1.1584 12 6 2.0875 8.3177 0.3399 13 8 2.8295 7.7513 -0.4392 14 7 2.0586 9.6644 0.3850 15 6 2.9208 10.4458 -0.5050 16 6 2.6989 11.9155 -0.2565 17 1 1.9872 12.2355 0.4901 18 6 3.4054 12.8517 -0.9815 19 7 3.2114 14.1342 -0.7650 20 14 4.6380 12.2981 -2.2713 21 1 3.9548 12.1625 -3.5829 22 1 5.7250 13.3040 -2.3810 23 1 5.2141 10.9879 -1.8755 24 6 1.6589 5.5093 0.0013 25 6 1.7512 4.1315 0.0178 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8532 0.9571 -1.0571 32 1 3.9281 2.4720 -0.1252 33 1 3.9993 0.9054 0.7162 34 1 1.1694 3.5884 3.3043 35 1 0.9960 6.0432 3.2757 36 1 0.6585 8.0493 1.7365 37 1 1.4669 10.1163 1.0068 38 1 3.9643 10.1981 -0.3097 39 1 2.6798 10.2118 -1.5420 40 1 3.7086 14.7928 -1.2748 41 1 1.7991 6.0489 -0.9236 42 1 1.9632 3.5936 -0.8945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488399805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:12 Heat of formation + Delta-G solvation = -49.061785 kcal Electronic energy + Delta-G solvation = -22550.409128 eV Core-core repulsion = 19109.699778 eV Total energy + Delta-G solvation = -3440.709350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58421 -39.67275 -37.67491 -34.86731 -34.28470 -33.69148 -32.34578 -31.09564 -30.14847 -28.93357 -27.32891 -24.29298 -23.37525 -22.94339 -21.73251 -20.71009 -20.35851 -18.50091 -18.29603 -17.33024 -16.44349 -15.92103 -15.52516 -15.01559 -14.84380 -14.75001 -14.26702 -14.23188 -13.95199 -13.60944 -13.44874 -13.18669 -13.13546 -12.74629 -12.54148 -12.37082 -12.26983 -12.09731 -11.93743 -11.41564 -11.35470 -11.02122 -10.96877 -10.78425 -10.59168 -9.99584 -9.79062 -9.55884 -9.47504 -8.94127 -8.80741 -8.25675 -7.52852 -6.23435 -4.25899 1.34650 1.48681 3.02450 3.16070 3.26044 3.33540 3.41239 3.53902 3.94057 4.31764 4.36260 4.57749 4.68224 4.78220 4.85989 4.95552 5.00411 5.12026 5.15504 5.26058 5.27403 5.37585 5.47037 5.53574 5.60250 5.66386 5.74219 5.86683 5.96167 5.99718 6.06371 6.40642 6.45456 6.54935 6.70815 7.00792 7.05821 7.16541 7.30512 7.43804 7.48091 8.22700 8.57634 8.75556 9.05327 9.36612 10.88411 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.002721 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.187474 B =10288.211052 C =10885.053139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.181 4.181 6 O -0.311 6.311 7 C 0.107 3.893 8 C -0.135 4.135 9 C -0.113 4.113 10 C 0.140 3.860 11 N -0.693 5.693 12 C 0.693 3.307 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.238 3.762 16 C -0.544 4.544 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.080 4.080 25 C -0.191 4.191 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.404 0.596 37 H 0.394 0.606 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.268 0.732 41 H 0.145 0.855 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -25.809 4.210 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.092 0.908 5 C -0.238 4.238 6 O -0.225 6.225 7 C 0.061 3.939 8 C -0.155 4.155 9 C -0.134 4.134 10 C 0.044 3.956 11 N -0.342 5.342 12 C 0.393 3.607 13 O -0.467 6.467 14 N -0.368 5.368 15 C 0.115 3.885 16 C -0.582 4.582 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.100 4.100 25 C -0.210 4.210 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.239 0.761 37 H 0.228 0.772 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.896 -26.134 3.556 26.825 hybrid contribution 0.178 0.511 -0.304 0.621 sum -4.718 -25.623 3.252 26.256 Atomic orbital electron populations 1.21762 0.95146 1.01731 1.02489 1.21617 0.96820 0.94027 1.03049 1.22481 0.94996 0.93745 0.86522 0.90768 1.22358 0.95293 1.03415 1.02735 1.86086 1.84064 1.16707 1.35682 1.18894 0.98466 0.82371 0.94138 1.20097 1.05960 0.92898 0.96517 1.20682 1.02998 0.93403 0.96332 1.17453 1.02551 0.82072 0.93484 1.42694 1.41745 1.04346 1.45378 1.16120 0.80736 0.82546 0.81264 1.90855 1.44033 1.70212 1.41590 1.45437 1.45547 1.02955 1.42848 1.19416 0.89635 0.90536 0.88885 1.21072 1.25806 0.87903 1.23436 0.90230 1.24780 0.96460 0.94628 0.96732 1.69874 1.41600 1.00288 1.41125 0.86813 0.81387 0.79295 0.82179 1.19824 1.20888 1.18430 1.21204 0.97395 0.92887 0.98550 1.21156 1.07741 0.94782 0.97360 0.91890 0.92788 0.92568 0.90202 0.90875 0.91142 0.91582 0.91551 0.85228 0.85197 0.76107 0.77212 0.95714 0.96170 0.92218 0.83769 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.81 37.16 0.36 -0.72 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.70 2.25 -26.73 -0.06 0.64 16 4 H 0.07 0.65 5.88 -51.93 -0.31 0.34 16 5 C -0.18 -1.52 9.31 37.16 0.35 -1.17 16 6 O -0.31 -3.51 9.34 -19.65 -0.18 -3.70 16 7 C 0.11 1.33 6.55 -39.23 -0.26 1.07 16 8 C -0.14 -1.59 9.98 -39.46 -0.39 -1.98 16 9 C -0.11 -1.36 9.96 -39.41 -0.39 -1.75 16 10 C 0.14 2.04 6.30 -83.61 -0.53 1.51 16 11 N -0.69 -10.24 5.35 -14.19 -0.08 -10.31 16 12 C 0.69 13.45 8.41 -86.91 -0.73 12.72 16 13 O -0.59 -13.45 13.79 5.29 0.07 -13.37 16 14 N -0.72 -14.39 5.55 -66.41 -0.37 -14.76 16 15 C 0.24 5.81 4.50 -5.19 -0.02 5.79 16 16 C -0.54 -14.79 9.83 -34.44 -0.34 -15.13 16 17 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 20 Si 0.88 21.32 27.47 -169.99 -4.67 16.65 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.08 -1.23 8.69 -39.41 -0.34 -1.57 16 25 C -0.19 -2.50 8.44 -39.46 -0.33 -2.83 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.66 7.52 -51.93 -0.39 0.27 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.40 4.54 8.84 -40.82 -0.36 4.18 16 37 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 38 H 0.02 0.64 7.20 -51.92 -0.37 0.27 16 39 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.14 2.51 6.24 -52.49 -0.33 2.19 16 42 H 0.13 1.45 5.75 -52.48 -0.30 1.15 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -32.41 347.63 -8.31 -40.72 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.16 Total: 7.38 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.94 Total: -2.30 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.33 Total: -50.61 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.11 Total: -17.07 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.41 -8.31 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488399805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.339 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds