Wall clock time and date at job start Tue Mar 31 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46714 * 2 1 4 4 H 1.08992 * 109.47454 * 304.99714 * 3 2 1 5 5 C 1.53005 * 109.46692 * 184.99838 * 3 2 1 6 6 O 1.42896 * 109.47506 * 65.00065 * 3 2 1 7 7 C 1.35970 * 117.00545 * 204.04628 * 6 3 2 8 8 C 1.38712 * 119.99321 * 184.68056 * 7 6 3 9 9 C 1.38097 * 120.02105 * 180.25331 * 8 7 6 10 10 C 1.38834 * 119.97814 * 359.49731 * 9 8 7 11 11 N 1.40150 * 120.00973 * 180.27045 * 10 9 8 12 12 C 1.34781 * 119.99724 * 144.80408 * 11 10 9 13 13 O 1.21583 * 120.00142 * 4.20162 * 12 11 10 14 14 N 1.34776 * 119.99796 * 184.19566 * 12 11 10 15 15 C 1.46506 * 119.99776 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.46965 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00266 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99907 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99992 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99755 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46905 * 90.00162 * 20 18 16 22 22 H 1.48503 * 109.46727 * 210.00044 * 20 18 16 23 23 H 1.48499 * 109.47346 * 330.00203 * 20 18 16 24 24 C 1.38828 * 119.97786 * 0.25463 * 10 9 8 25 25 C 1.38097 * 119.98210 * 359.97438 * 24 10 9 26 26 H 1.08996 * 109.47556 * 300.00112 * 1 2 3 27 27 H 1.09002 * 109.47240 * 60.00056 * 1 2 3 28 28 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47009 * 240.00402 * 2 1 3 30 30 H 1.08990 * 109.46860 * 119.99735 * 2 1 3 31 31 H 1.08998 * 109.47318 * 60.00301 * 5 3 2 32 32 H 1.08999 * 109.46567 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.46792 * 299.99714 * 5 3 2 34 34 H 1.08009 * 119.98865 * 0.02987 * 8 7 6 35 35 H 1.08001 * 120.01236 * 179.77363 * 9 8 7 36 36 H 0.96996 * 120.00876 * 324.81106 * 11 10 9 37 37 H 0.97001 * 120.00751 * 0.02562 * 14 12 11 38 38 H 1.09008 * 109.46932 * 300.00063 * 15 14 12 39 39 H 1.08996 * 109.47180 * 59.99857 * 15 14 12 40 40 H 0.97004 * 120.00031 * 179.97438 * 19 18 16 41 41 H 1.07994 * 120.01313 * 180.02562 * 24 10 9 42 42 H 1.08004 * 119.99535 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.5713 3.4381 1.2056 8 6 1.3046 4.1285 2.3788 9 6 1.2073 5.5060 2.3629 10 6 1.3869 6.2004 1.1742 11 7 1.2939 7.5988 1.1584 12 6 2.0875 8.3177 0.3399 13 8 2.8295 7.7513 -0.4392 14 7 2.0586 9.6644 0.3850 15 6 2.9208 10.4458 -0.5050 16 6 2.6989 11.9155 -0.2565 17 1 1.9872 12.2355 0.4901 18 6 3.4054 12.8517 -0.9815 19 7 3.2114 14.1342 -0.7650 20 14 4.6380 12.2981 -2.2713 21 1 3.9548 12.1625 -3.5829 22 1 5.7250 13.3040 -2.3810 23 1 5.2141 10.9879 -1.8755 24 6 1.6589 5.5093 0.0013 25 6 1.7512 4.1315 0.0178 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8532 0.9571 -1.0571 32 1 3.9281 2.4720 -0.1252 33 1 3.9993 0.9054 0.7162 34 1 1.1694 3.5884 3.3043 35 1 0.9960 6.0432 3.2757 36 1 0.6585 8.0493 1.7365 37 1 1.4669 10.1163 1.0068 38 1 3.9643 10.1981 -0.3097 39 1 2.6798 10.2118 -1.5420 40 1 3.7086 14.7928 -1.2748 41 1 1.7991 6.0489 -0.9236 42 1 1.9632 3.5936 -0.8945 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488399805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:11 Heat of formation + Delta-G solvation = -70.540863 kcal Electronic energy + Delta-G solvation = -22551.340531 eV Core-core repulsion = 19109.699778 eV Total energy + Delta-G solvation = -3441.640753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72904 -40.85948 -38.77373 -36.27722 -35.70366 -34.76069 -34.28667 -32.05795 -30.84211 -30.44170 -28.86619 -25.06324 -24.61067 -24.14303 -23.14719 -21.86383 -21.52317 -19.95529 -19.34813 -18.57401 -18.30624 -16.98693 -16.65435 -16.50941 -16.21436 -15.88910 -15.70652 -15.14586 -15.00563 -14.82140 -14.54320 -14.45566 -14.24823 -14.10274 -13.96472 -13.48025 -13.44065 -13.04045 -12.83092 -12.73108 -12.67801 -12.21199 -11.97903 -11.93117 -11.70940 -11.66067 -11.44369 -11.21162 -10.92023 -10.79494 -9.98756 -9.96028 -8.62617 -8.39902 -6.46885 0.34696 0.41975 1.33646 1.35659 1.48713 1.71298 2.08386 2.28542 2.29764 2.84210 2.95830 3.36391 3.71772 3.84911 3.92692 4.01131 4.11900 4.27033 4.41010 4.46411 4.52946 4.61583 4.68105 4.73661 4.74778 4.92873 4.99395 5.03542 5.08292 5.09421 5.19432 5.22663 5.25459 5.35969 5.39052 5.42652 5.48901 5.52774 5.89721 5.97111 6.24252 6.51693 6.55200 7.08891 7.20335 7.55437 8.74682 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.002721 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.187474 B =10288.211052 C =10885.053139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C 0.071 3.929 4 H 0.074 0.926 5 C -0.178 4.178 6 O -0.315 6.315 7 C 0.109 3.891 8 C -0.136 4.136 9 C -0.098 4.098 10 C 0.112 3.888 11 N -0.672 5.672 12 C 0.694 3.306 13 O -0.625 6.625 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.546 4.546 17 H 0.061 0.939 18 C 0.027 3.973 19 N -0.930 5.930 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.101 4.101 25 C -0.195 4.195 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.422 0.578 37 H 0.408 0.592 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.761 -28.096 4.833 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.015 3.985 4 H 0.092 0.908 5 C -0.235 4.235 6 O -0.230 6.230 7 C 0.063 3.937 8 C -0.155 4.155 9 C -0.119 4.119 10 C 0.018 3.982 11 N -0.322 5.322 12 C 0.394 3.606 13 O -0.506 6.506 14 N -0.368 5.368 15 C 0.127 3.873 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.174 4.174 19 N -0.569 5.569 20 Si 0.761 3.239 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.185 1.185 24 C -0.122 4.122 25 C -0.214 4.214 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.261 0.739 37 H 0.243 0.757 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.054 -28.449 4.225 29.202 hybrid contribution 0.143 1.083 -0.432 1.175 sum -4.910 -27.366 3.793 28.061 Atomic orbital electron populations 1.21762 0.95268 1.02398 1.01711 1.21644 0.96661 0.92651 1.04135 1.22741 0.95399 0.94724 0.85631 0.90832 1.22346 0.94871 1.02397 1.03930 1.86097 1.83869 1.15947 1.37050 1.19068 0.97501 0.83036 0.94101 1.20466 1.04837 0.92947 0.97241 1.20951 1.01068 0.93547 0.96294 1.17675 1.04532 0.81622 0.94375 1.42361 1.40956 1.04501 1.44393 1.16181 0.80839 0.82136 0.81424 1.90836 1.45742 1.70792 1.43233 1.45112 1.45543 1.03334 1.42811 1.18992 0.89662 0.89386 0.89239 1.21263 1.25057 0.89394 1.22686 0.92115 1.25575 0.98323 0.94659 0.98800 1.69974 1.42990 1.01400 1.42534 0.85861 0.79348 0.78870 0.79832 1.18955 1.19850 1.18465 1.21087 0.99193 0.93870 0.98036 1.21215 1.07774 0.94005 0.98421 0.93336 0.92884 0.91217 0.88174 0.90686 0.89186 0.93558 0.91315 0.82718 0.82126 0.73948 0.75677 0.97017 0.96999 0.91820 0.86606 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.18 16 2 C -0.11 -1.32 5.64 30.60 0.17 -1.15 16 3 C 0.07 1.14 2.25 30.60 0.07 1.21 16 4 H 0.07 1.20 5.88 -2.39 -0.01 1.18 16 5 C -0.18 -2.73 9.31 71.98 0.67 -2.06 16 6 O -0.32 -6.59 9.34 -93.21 -0.87 -7.46 16 7 C 0.11 2.55 6.55 22.50 0.15 2.69 16 8 C -0.14 -2.84 9.98 22.35 0.22 -2.61 16 9 C -0.10 -2.10 9.96 22.38 0.22 -1.88 16 10 C 0.11 3.17 6.30 38.09 0.24 3.41 16 11 N -0.67 -19.24 5.35 -317.07 -1.70 -20.94 16 12 C 0.69 26.90 8.41 179.05 1.51 28.41 16 13 O -0.62 -29.06 13.79 -3.98 -0.05 -29.12 16 14 N -0.71 -28.68 5.55 -482.28 -2.68 -31.36 16 15 C 0.25 12.34 4.50 85.63 0.38 12.73 16 16 C -0.55 -29.99 9.83 25.60 0.25 -29.74 16 17 H 0.06 3.49 7.84 -2.91 -0.02 3.46 16 18 C 0.03 1.51 5.47 84.66 0.46 1.98 16 19 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 20 Si 0.94 44.01 27.47 68.60 1.88 45.90 16 21 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 24 C -0.10 -3.15 8.69 22.38 0.19 -2.95 16 25 C -0.20 -5.05 8.44 22.35 0.19 -4.86 16 26 H 0.05 0.73 7.82 -2.39 -0.02 0.71 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.89 7.52 -2.39 -0.02 0.87 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.42 8.75 8.84 -92.71 -0.82 7.93 16 37 H 0.41 14.01 8.34 -92.71 -0.77 13.24 16 38 H 0.01 0.62 7.20 -2.38 -0.02 0.60 16 39 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.12 4.25 6.24 -2.91 -0.02 4.23 16 42 H 0.14 3.13 5.75 -2.91 -0.02 3.12 16 Total: -1.00 -70.24 347.63 1.72 -68.52 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.61 Total: 25.51 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.44 Total: 4.00 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.08 Total: -107.35 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.93 Total: -36.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.88 Total: 45.90 kcal Total: -70.24 1.72 -68.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488399805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.022 kcal (2) G-P(sol) polarization free energy of solvation -70.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds