Wall clock time and date at job start Tue Mar 31 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.46704 * 119.99742 * 2 1 3 5 5 O 1.42898 * 109.47366 * 239.99938 * 2 1 3 6 6 C 1.35988 * 117.00097 * 64.65345 * 5 2 1 7 7 C 1.38546 * 120.07676 * 354.64772 * 6 5 2 8 8 C 1.38255 * 120.01080 * 179.97438 * 7 6 5 9 9 C 1.38273 * 120.17399 * 359.97438 * 8 7 6 10 10 C 1.38201 * 120.16361 * 0.02562 * 9 8 7 11 11 C 1.38713 * 119.98663 * 359.71879 * 10 9 8 12 12 N 1.40165 * 120.09000 * 180.27852 * 11 10 9 13 13 C 1.34771 * 120.00102 * 34.95741 * 12 11 10 14 14 O 1.21593 * 120.00172 * 5.02703 * 13 12 11 15 15 N 1.34781 * 120.00161 * 185.03056 * 13 12 11 16 16 C 1.46492 * 120.00210 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.47400 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99553 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99802 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99354 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00392 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47052 * 89.99973 * 21 19 17 23 23 H 1.48507 * 109.47149 * 209.99721 * 21 19 17 24 24 H 1.48505 * 109.47375 * 329.99815 * 21 19 17 25 25 H 1.09004 * 109.46722 * 55.06425 * 1 2 3 26 26 H 1.09000 * 109.46915 * 175.05727 * 1 2 3 27 27 H 1.08992 * 109.47451 * 295.06298 * 1 2 3 28 28 H 1.09003 * 109.47190 * 64.94946 * 3 2 1 29 29 H 1.09002 * 109.47178 * 184.94926 * 3 2 1 30 30 H 1.08999 * 109.47350 * 304.94892 * 3 2 1 31 31 H 1.08995 * 109.47078 * 60.00514 * 4 2 1 32 32 H 1.09006 * 109.46437 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47341 * 300.00096 * 4 2 1 34 34 H 1.08000 * 119.99865 * 359.96224 * 7 6 5 35 35 H 1.07996 * 119.91215 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.91595 * 179.97438 * 9 8 7 37 37 H 1.08005 * 120.00812 * 179.97438 * 10 9 8 38 38 H 0.97005 * 119.99799 * 214.95236 * 12 11 10 39 39 H 0.96995 * 119.99434 * 0.02562 * 15 13 12 40 40 H 1.09007 * 109.47464 * 300.00040 * 16 15 13 41 41 H 1.09002 * 109.47221 * 60.00075 * 16 15 13 42 42 H 0.97010 * 119.99856 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 2.0064 -0.6736 -1.1667 6 6 1.7232 -0.1028 -2.3681 7 6 0.9101 1.0172 -2.4302 8 6 0.6235 1.5967 -3.6523 9 6 1.1469 1.0618 -4.8150 10 6 1.9589 -0.0552 -4.7614 11 6 2.2552 -0.6389 -3.5384 12 7 3.0832 -1.7684 -3.4810 13 6 4.1084 -1.8971 -4.3463 14 8 4.3716 -0.9932 -5.1158 15 7 4.8419 -3.0278 -4.3588 16 6 5.9559 -3.1678 -5.2997 17 6 6.6074 -4.5135 -5.1102 18 1 6.2291 -5.1962 -4.3638 19 6 7.6856 -4.8733 -5.8905 20 7 8.2544 -6.0475 -5.7247 21 14 8.3395 -3.6927 -7.1819 22 1 9.3828 -2.8259 -6.5773 23 1 8.9277 -4.4648 -8.3059 24 1 7.2278 -2.8489 -7.6894 25 1 -0.3633 0.5885 -0.8425 26 1 -0.3633 -1.0238 -0.0885 27 1 -0.3634 0.4353 0.9308 28 1 1.7509 1.9301 0.9310 29 1 3.1265 1.4438 -0.0887 30 1 1.6061 1.9813 -0.8423 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -0.2074 2.1393 34 1 0.4998 1.4375 -1.5239 35 1 -0.0109 2.4694 -3.6989 36 1 0.9200 1.5176 -5.7674 37 1 2.3661 -0.4712 -5.6711 38 1 2.9183 -2.4575 -2.8184 39 1 4.6316 -3.7490 -3.7452 40 1 5.5821 -3.0852 -6.3203 41 1 6.6878 -2.3812 -5.1160 42 1 9.0134 -6.3006 -6.2734 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488503733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:11 Heat of formation + Delta-G solvation = -19.788799 kcal Electronic energy + Delta-G solvation = -23436.462329 eV Core-core repulsion = 19997.022351 eV Total energy + Delta-G solvation = -3439.439978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04792 -39.57542 -37.65505 -34.87212 -34.30242 -33.77257 -32.34565 -30.60808 -29.27292 -27.72542 -27.56573 -27.38568 -23.35244 -22.77900 -21.59615 -20.50674 -20.27790 -18.34636 -17.78589 -17.16078 -16.38423 -15.83006 -15.55419 -15.29763 -14.91667 -14.76886 -14.34946 -14.19918 -13.96945 -13.72822 -13.15022 -13.05776 -12.66499 -12.54228 -12.38577 -12.32361 -12.20016 -12.15914 -11.90033 -11.80765 -11.13911 -10.98959 -10.83362 -10.77453 -10.52913 -10.05185 -9.95979 -9.57838 -9.45463 -8.77147 -8.44640 -8.19570 -7.59536 -6.20210 -4.22359 1.39086 1.47206 3.00007 3.18787 3.29030 3.36141 3.44014 3.58790 3.99221 4.34886 4.39711 4.49722 4.62554 4.79323 4.82207 4.95986 5.15328 5.16645 5.19138 5.24179 5.35453 5.38884 5.46943 5.49149 5.52438 5.71362 5.76563 5.90423 5.93984 5.97254 6.21710 6.31471 6.57567 6.70682 6.73982 6.97332 7.10129 7.20145 7.35818 7.47356 7.54125 8.27043 8.63266 8.79585 9.11907 9.40195 10.91719 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.003582 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.873969 B = 7815.730383 C = 8709.368863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.111 3.889 3 C -0.204 4.204 4 C -0.139 4.139 5 O -0.307 6.307 6 C 0.102 3.898 7 C -0.212 4.212 8 C -0.112 4.112 9 C -0.136 4.136 10 C -0.087 4.087 11 C 0.153 3.847 12 N -0.686 5.686 13 C 0.694 3.306 14 O -0.589 6.589 15 N -0.716 5.716 16 C 0.238 3.762 17 C -0.543 4.543 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.156 0.844 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.407 0.593 39 H 0.394 0.606 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 14.154 12.170 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.074 3.926 3 C -0.260 4.260 4 C -0.196 4.196 5 O -0.222 6.222 6 C 0.054 3.946 7 C -0.231 4.231 8 C -0.131 4.131 9 C -0.155 4.155 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.335 5.335 13 C 0.394 3.606 14 O -0.467 6.467 15 N -0.368 5.368 16 C 0.115 3.885 17 C -0.581 4.581 18 H 0.098 0.902 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.173 0.827 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.242 0.758 39 H 0.228 0.772 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.571 14.572 11.403 25.517 hybrid contribution 0.257 -0.052 0.051 0.267 sum -17.314 14.520 11.453 25.334 Atomic orbital electron populations 1.22859 0.95048 1.03878 1.03600 1.21729 0.93673 0.92551 0.84692 1.22938 1.03156 0.96084 1.03848 1.21787 1.02444 1.01027 0.94336 1.86118 1.74560 1.49779 1.11704 1.18614 0.98219 0.93552 0.84195 1.21833 1.03237 0.98108 0.99880 1.20884 1.00292 0.99934 0.91991 1.20936 0.99171 0.96984 0.98445 1.21116 0.96451 0.96510 0.96717 1.16871 0.95342 0.91054 0.91077 1.42568 1.30525 1.22495 1.37880 1.16100 0.79339 0.83895 0.81254 1.90878 1.71772 1.40610 1.43487 1.45417 1.34093 1.15793 1.41469 1.19410 0.83485 0.97460 0.88110 1.21082 1.15239 0.99745 1.22043 0.90235 1.24774 0.95794 0.95201 0.96817 1.69884 1.22779 1.20195 1.40129 0.86813 0.80063 0.81250 0.81548 1.19840 1.20908 1.18412 0.90022 0.91325 0.91157 0.91179 0.91294 0.89554 0.91445 0.91387 0.90632 0.82702 0.86146 0.85895 0.84045 0.75828 0.77226 0.95694 0.96200 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 8.26 37.16 0.31 -1.16 16 2 C 0.11 1.02 1.11 -90.62 -0.10 0.92 16 3 C -0.20 -1.73 8.08 37.16 0.30 -1.43 16 4 C -0.14 -1.08 8.84 37.16 0.33 -0.75 16 5 O -0.31 -3.84 9.35 -19.70 -0.18 -4.02 16 6 C 0.10 1.37 6.16 -39.08 -0.24 1.13 16 7 C -0.21 -2.35 6.37 -39.46 -0.25 -2.60 16 8 C -0.11 -1.22 10.04 -39.56 -0.40 -1.61 16 9 C -0.14 -1.72 10.04 -39.58 -0.40 -2.12 16 10 C -0.09 -1.37 8.65 -39.42 -0.34 -1.71 16 11 C 0.15 2.42 6.27 -83.48 -0.52 1.89 16 12 N -0.69 -11.30 5.20 -14.10 -0.07 -11.38 16 13 C 0.69 14.20 8.30 -86.92 -0.72 13.48 16 14 O -0.59 -13.97 14.14 5.28 0.07 -13.89 16 15 N -0.72 -15.05 5.55 -66.41 -0.37 -15.42 16 16 C 0.24 5.95 4.50 -5.20 -0.02 5.93 16 17 C -0.54 -15.03 9.83 -34.44 -0.34 -15.37 16 18 H 0.08 2.29 7.84 -52.49 -0.41 1.87 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 21 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 25 H 0.08 0.61 4.55 -51.93 -0.24 0.37 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.74 4.30 -51.93 -0.22 0.52 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.16 1.33 2.86 -52.49 -0.15 1.18 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.14 2.49 6.53 -52.48 -0.34 2.15 16 38 H 0.41 5.68 8.58 -40.82 -0.35 5.33 16 39 H 0.39 7.30 8.34 -40.82 -0.34 6.96 16 40 H 0.03 0.65 7.20 -51.92 -0.37 0.28 16 41 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -32.89 337.51 -7.65 -40.54 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.79 Total: 9.30 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.50 Total: -1.29 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.33 Total: -52.65 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.11 Total: -17.91 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.89 -7.65 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488503733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.750 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds