Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08997 * 109.70754 * 257.49074 * 3 2 1 5 5 C 1.52882 * 109.61875 * 137.18987 * 3 2 1 6 6 O 1.42962 * 109.29929 * 188.11355 * 5 3 2 7 7 C 1.42957 * 114.16541 * 62.44883 * 6 5 3 8 8 C 1.53301 * 109.22586 * 297.42109 * 7 6 5 9 9 N 1.47146 * 109.68184 * 18.03236 * 3 2 1 10 10 C 1.34778 * 120.98256 * 350.27814 * 9 3 2 11 11 O 1.21582 * 119.99765 * 4.85092 * 10 9 3 12 12 N 1.34776 * 120.00137 * 184.84819 * 10 9 3 13 13 C 1.46497 * 120.00235 * 175.02419 * 12 10 9 14 14 H 1.08996 * 110.01685 * 325.06069 * 13 12 10 15 15 C 1.53875 * 110.03054 * 86.45322 * 13 12 10 16 16 C 1.54274 * 106.59636 * 119.28730 * 15 13 12 17 17 C 1.54889 * 104.19642 * 23.61079 * 16 15 13 18 18 H 1.08996 * 110.75832 * 80.36901 * 17 16 15 19 19 C 1.50701 * 110.75488 * 203.74327 * 17 16 15 20 20 H 1.08008 * 120.00092 * 118.54065 * 19 17 16 21 21 C 1.37877 * 119.99969 * 298.54388 * 19 17 16 22 22 N 1.31512 * 119.99662 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99929 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47281 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47045 * 120.00162 * 23 21 19 26 26 H 1.48500 * 109.47591 * 240.00032 * 23 21 19 27 27 C 1.54270 * 110.03245 * 203.61891 * 13 12 10 28 28 H 4.19115 * 14.98042 * 359.97438 * 4 2 1 29 29 H 1.09003 * 109.57869 * 68.09990 * 5 3 2 30 30 H 1.08994 * 109.40687 * 308.02428 * 5 3 2 31 31 H 1.08999 * 109.51075 * 177.49416 * 7 6 5 32 32 H 1.09000 * 109.55308 * 57.36837 * 7 6 5 33 33 H 1.09001 * 109.67661 * 292.57943 * 8 7 6 34 34 H 1.09000 * 109.70944 * 172.04231 * 8 7 6 35 35 H 0.97007 * 119.99874 * 354.74956 * 12 10 9 36 36 H 1.09007 * 110.02897 * 238.56629 * 15 13 12 37 37 H 1.08993 * 110.03327 * 0.02562 * 15 13 12 38 38 H 1.09001 * 110.47992 * 142.28192 * 16 15 13 39 39 H 1.08996 * 110.48581 * 264.79815 * 16 15 13 40 40 H 0.97006 * 119.99641 * 180.02562 * 22 21 19 41 41 H 1.08993 * 110.48744 * 335.78370 * 27 13 12 42 42 H 1.09006 * 110.48288 * 98.42877 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.2231 1.0018 5 6 3.1589 1.0573 -0.9786 6 8 4.5758 0.9260 -1.1160 7 6 4.9974 -0.3268 -1.6604 8 6 4.5796 -1.4558 -0.7113 9 7 3.1422 -1.3166 -0.4289 10 6 2.3040 -2.3633 -0.5643 11 8 1.1073 -2.2067 -0.4170 12 7 2.7923 -3.5834 -0.8631 13 6 1.8959 -4.7415 -0.9030 14 1 1.1218 -4.6405 -0.1424 15 6 1.2537 -4.8630 -2.2960 16 6 1.6880 -6.2301 -2.8638 17 6 2.0245 -7.0731 -1.6087 18 1 1.1164 -7.4703 -1.1553 19 6 2.9818 -8.1849 -1.9531 20 1 3.9557 -8.2226 -1.4876 21 6 2.6144 -9.1540 -2.8624 22 7 1.4288 -9.1078 -3.4296 23 14 3.8012 -10.5317 -3.2898 24 1 5.0598 -10.3571 -2.5213 25 1 3.1876 -11.8390 -2.9433 26 1 4.0995 -10.4949 -4.7440 27 6 2.6983 -6.0389 -0.6730 28 1 -1.0500 0.0004 -0.0003 29 1 2.9202 2.0516 -0.6008 30 1 2.6840 0.9130 -1.9490 31 1 6.0815 -0.3283 -1.7732 32 1 4.5299 -0.4775 -2.6335 33 1 5.1452 -1.3825 0.2176 34 1 4.7696 -2.4206 -1.1817 35 1 3.7366 -3.6941 -1.0555 36 1 0.1677 -4.8219 -2.2113 37 1 1.6092 -4.0607 -2.9424 38 1 0.8718 -6.6876 -3.4230 39 1 2.5677 -6.1179 -3.4975 40 1 1.1702 -9.7898 -4.0691 41 1 3.7424 -5.8961 -0.9510 42 1 2.6194 -6.3569 0.3667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491370799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -0.890760 kcal Electronic energy + Delta-G solvation = -23817.740754 eV Core-core repulsion = 20379.120256 eV Total energy + Delta-G solvation = -3438.620498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72784 -38.78124 -37.15591 -34.90739 -34.42892 -32.99184 -31.68690 -30.68007 -28.29307 -28.03313 -26.66026 -24.75829 -23.84266 -22.46214 -20.49733 -19.87069 -19.11289 -18.64627 -17.36105 -16.78369 -16.46832 -16.20478 -15.68899 -15.38290 -15.17850 -14.90975 -14.63179 -14.13906 -13.99944 -13.48738 -13.17466 -12.65755 -12.48566 -12.30220 -11.91250 -11.75229 -11.35559 -11.17576 -11.09166 -11.00342 -10.87838 -10.55220 -10.50662 -10.27821 -10.21899 -9.93600 -9.51978 -9.23947 -8.87144 -8.81576 -8.72322 -8.43435 -8.36485 -6.01957 -4.05651 2.29848 2.97144 3.27777 3.27940 3.36335 3.37499 3.39341 3.49616 4.01959 4.29110 4.42308 4.52064 4.72756 4.74351 4.83655 4.96512 5.18947 5.30327 5.36955 5.42021 5.53460 5.59144 5.69342 5.85091 5.97219 6.23004 6.33797 6.37324 6.58308 6.67490 6.70500 6.74400 6.89773 6.95789 6.97564 7.27865 7.37055 7.71718 7.87880 7.89565 8.01748 8.10985 8.41512 8.78946 8.96599 9.58648 11.07108 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.003535 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.071424 B = 7919.751008 C = 8578.320089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.187 4.187 3 C 0.250 3.750 4 H 0.095 0.905 5 C 0.057 3.943 6 O -0.376 6.376 7 C 0.045 3.955 8 C 0.078 3.922 9 N -0.638 5.638 10 C 0.703 3.297 11 O -0.566 6.566 12 N -0.734 5.734 13 C 0.158 3.842 14 H 0.077 0.923 15 C -0.133 4.133 16 C -0.100 4.100 17 C 0.052 3.948 18 H 0.032 0.968 19 C -0.514 4.514 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.120 4.120 28 H 0.212 0.788 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.390 0.610 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.259 0.741 41 H 0.059 0.941 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 18.979 4.698 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.187 4.187 3 C 0.147 3.853 4 H 0.113 0.887 5 C -0.021 4.021 6 O -0.294 6.294 7 C -0.032 4.032 8 C -0.046 4.046 9 N -0.379 5.379 10 C 0.405 3.595 11 O -0.442 6.442 12 N -0.390 5.390 13 C 0.054 3.946 14 H 0.095 0.905 15 C -0.172 4.172 16 C -0.138 4.138 17 C 0.033 3.967 18 H 0.050 0.950 19 C -0.553 4.553 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.158 4.158 28 H 0.229 0.771 29 H 0.128 0.872 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.635 19.093 4.751 20.214 hybrid contribution 0.746 -1.185 -0.538 1.500 sum 5.381 17.908 4.213 19.168 Atomic orbital electron populations 1.24548 0.95471 0.99344 0.98005 1.21676 0.93050 1.01127 1.02880 1.18238 0.85499 0.82768 0.98803 0.88740 1.22928 0.81449 0.98833 0.98849 1.87977 1.21635 1.35356 1.84405 1.23032 1.01093 0.83353 0.95771 1.22359 0.81421 1.00278 1.00538 1.47454 1.07527 1.09164 1.73754 1.16008 0.85011 0.80391 0.78111 1.91035 1.13019 1.82356 1.57796 1.45807 1.12213 1.06445 1.74494 1.21733 0.91685 0.83236 0.97996 0.90465 1.22650 0.99599 0.99510 0.95462 1.22301 1.00391 0.91549 0.99546 1.19554 0.95428 0.91294 0.90446 0.94978 1.21128 1.00956 1.08882 1.24286 0.92616 1.24978 0.95120 0.97729 0.96078 1.69975 1.19251 1.34586 1.28780 0.86588 0.81305 0.82268 0.78116 1.19843 1.21073 1.21107 1.22760 0.98940 0.93896 1.00249 0.77072 0.87162 0.92083 0.87252 0.92268 0.90245 0.88920 0.77443 0.92667 0.93401 0.91299 0.93632 0.93120 0.92218 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 17.75 29.55 0.52 -1.60 16 2 C -0.19 -2.62 10.08 -37.12 -0.37 -3.00 16 3 C 0.25 2.93 3.51 -70.42 -0.25 2.68 16 4 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.06 0.55 6.23 37.10 0.23 0.78 16 6 O -0.38 -3.65 10.74 -35.23 -0.38 -4.03 16 7 C 0.05 0.37 6.98 37.31 0.26 0.63 16 8 C 0.08 0.70 6.58 -3.53 -0.02 0.67 16 9 N -0.64 -8.09 3.03 -173.88 -0.53 -8.62 16 10 C 0.70 11.47 8.21 -86.92 -0.71 10.75 16 11 O -0.57 -11.06 12.10 5.29 0.06 -10.99 16 12 N -0.73 -11.46 4.90 -57.58 -0.28 -11.75 16 13 C 0.16 2.91 3.19 -66.81 -0.21 2.70 16 14 H 0.08 1.52 7.68 -51.93 -0.40 1.12 16 15 C -0.13 -2.66 6.59 -25.61 -0.17 -2.83 16 16 C -0.10 -2.30 5.56 -25.07 -0.14 -2.44 16 17 C 0.05 1.25 2.82 -89.78 -0.25 0.99 16 18 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.51 -13.70 8.54 -34.44 -0.29 -14.00 16 20 H 0.06 1.46 7.78 -52.48 -0.41 1.05 16 21 C 0.06 1.71 5.33 -17.82 -0.10 1.61 16 22 N -0.89 -25.17 12.02 55.43 0.67 -24.50 16 23 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.12 -2.37 5.94 -25.07 -0.15 -2.51 16 28 H 0.21 2.27 7.80 -54.09 -0.42 1.85 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.76 5.77 -51.93 -0.30 0.46 16 35 H 0.39 5.13 5.90 -40.82 -0.24 4.89 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.93 7.92 -51.93 -0.41 0.51 16 38 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 39 H 0.04 1.07 8.04 -51.93 -0.42 0.66 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -31.94 338.43 -8.35 -40.29 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.32 Total: 4.20 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.65 Total: -5.56 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.14 Total: -44.87 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.31 Total: -15.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.94 -8.35 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491370799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.400 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds