Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08997 * 109.70754 * 257.49074 * 3 2 1 5 5 C 1.52882 * 109.61875 * 137.18987 * 3 2 1 6 6 O 1.42962 * 109.29929 * 188.11355 * 5 3 2 7 7 C 1.42957 * 114.16541 * 62.44883 * 6 5 3 8 8 C 1.53301 * 109.22586 * 297.42109 * 7 6 5 9 9 N 1.47146 * 109.68184 * 18.03236 * 3 2 1 10 10 C 1.34778 * 120.98256 * 350.27814 * 9 3 2 11 11 O 1.21582 * 119.99765 * 4.85092 * 10 9 3 12 12 N 1.34776 * 120.00137 * 184.84819 * 10 9 3 13 13 C 1.46497 * 120.00235 * 175.02419 * 12 10 9 14 14 H 1.08996 * 110.01685 * 325.06069 * 13 12 10 15 15 C 1.53875 * 110.03054 * 86.45322 * 13 12 10 16 16 C 1.54274 * 106.59636 * 119.28730 * 15 13 12 17 17 C 1.54889 * 104.19642 * 23.61079 * 16 15 13 18 18 H 1.08996 * 110.75832 * 80.36901 * 17 16 15 19 19 C 1.50701 * 110.75488 * 203.74327 * 17 16 15 20 20 H 1.08008 * 120.00092 * 118.54065 * 19 17 16 21 21 C 1.37877 * 119.99969 * 298.54388 * 19 17 16 22 22 N 1.31512 * 119.99662 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99929 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47281 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.47045 * 120.00162 * 23 21 19 26 26 H 1.48500 * 109.47591 * 240.00032 * 23 21 19 27 27 C 1.54270 * 110.03245 * 203.61891 * 13 12 10 28 28 H 4.19115 * 14.98042 * 359.97438 * 4 2 1 29 29 H 1.09003 * 109.57869 * 68.09990 * 5 3 2 30 30 H 1.08994 * 109.40687 * 308.02428 * 5 3 2 31 31 H 1.08999 * 109.51075 * 177.49416 * 7 6 5 32 32 H 1.09000 * 109.55308 * 57.36837 * 7 6 5 33 33 H 1.09001 * 109.67661 * 292.57943 * 8 7 6 34 34 H 1.09000 * 109.70944 * 172.04231 * 8 7 6 35 35 H 0.97007 * 119.99874 * 354.74956 * 12 10 9 36 36 H 1.09007 * 110.02897 * 238.56629 * 15 13 12 37 37 H 1.08993 * 110.03327 * 0.02562 * 15 13 12 38 38 H 1.09001 * 110.47992 * 142.28192 * 16 15 13 39 39 H 1.08996 * 110.48581 * 264.79815 * 16 15 13 40 40 H 0.97006 * 119.99641 * 180.02562 * 22 21 19 41 41 H 1.08993 * 110.48744 * 335.78370 * 27 13 12 42 42 H 1.09006 * 110.48288 * 98.42877 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0135 0.2231 1.0018 5 6 3.1589 1.0573 -0.9786 6 8 4.5758 0.9260 -1.1160 7 6 4.9974 -0.3268 -1.6604 8 6 4.5796 -1.4558 -0.7113 9 7 3.1422 -1.3166 -0.4289 10 6 2.3040 -2.3633 -0.5643 11 8 1.1073 -2.2067 -0.4170 12 7 2.7923 -3.5834 -0.8631 13 6 1.8959 -4.7415 -0.9030 14 1 1.1218 -4.6405 -0.1424 15 6 1.2537 -4.8630 -2.2960 16 6 1.6880 -6.2301 -2.8638 17 6 2.0245 -7.0731 -1.6087 18 1 1.1164 -7.4703 -1.1553 19 6 2.9818 -8.1849 -1.9531 20 1 3.9557 -8.2226 -1.4876 21 6 2.6144 -9.1540 -2.8624 22 7 1.4288 -9.1078 -3.4296 23 14 3.8012 -10.5317 -3.2898 24 1 5.0598 -10.3571 -2.5213 25 1 3.1876 -11.8390 -2.9433 26 1 4.0995 -10.4949 -4.7440 27 6 2.6983 -6.0389 -0.6730 28 1 -1.0500 0.0004 -0.0003 29 1 2.9202 2.0516 -0.6008 30 1 2.6840 0.9130 -1.9490 31 1 6.0815 -0.3283 -1.7732 32 1 4.5299 -0.4775 -2.6335 33 1 5.1452 -1.3825 0.2176 34 1 4.7696 -2.4206 -1.1817 35 1 3.7366 -3.6941 -1.0555 36 1 0.1677 -4.8219 -2.2113 37 1 1.6092 -4.0607 -2.9424 38 1 0.8718 -6.6876 -3.4230 39 1 2.5677 -6.1179 -3.4975 40 1 1.1702 -9.7898 -4.0691 41 1 3.7424 -5.8961 -0.9510 42 1 2.6194 -6.3569 0.3667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491370799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -21.110727 kcal Electronic energy + Delta-G solvation = -23818.617558 eV Core-core repulsion = 20379.120256 eV Total energy + Delta-G solvation = -3439.497301 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.78720 -39.88320 -38.63605 -35.93249 -35.70484 -34.53528 -33.25428 -31.52532 -29.99790 -29.28310 -28.10061 -25.87124 -25.41706 -23.42192 -21.64126 -21.45236 -20.70959 -19.90786 -18.48665 -18.32092 -17.55315 -17.20724 -16.76326 -16.54326 -16.51023 -16.06684 -16.00602 -15.59141 -15.29159 -14.62077 -14.52874 -14.09365 -13.82600 -13.64211 -13.24232 -13.03427 -12.83623 -12.64965 -12.58952 -12.36146 -12.32746 -12.01217 -11.91721 -11.65211 -11.38403 -11.30691 -11.27055 -11.07433 -10.80120 -10.46018 -10.10373 -9.98045 -9.47773 -8.08959 -6.19538 1.26778 1.42767 1.45217 1.55861 1.95203 2.14639 2.22474 2.45870 2.76827 2.95353 3.22115 3.43563 3.75008 3.89414 3.94771 4.03026 4.05838 4.13845 4.20166 4.25061 4.52006 4.67328 4.67974 4.75574 4.81791 4.88754 4.91735 5.02318 5.04329 5.06877 5.15693 5.27500 5.36449 5.41425 5.67084 5.69192 5.83716 5.94875 6.00304 6.01392 6.37908 6.88065 6.90797 6.95385 7.48482 7.56755 8.99671 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.003535 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.071424 B = 7919.751008 C = 8578.320089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.205 4.205 3 C 0.243 3.757 4 H 0.110 0.890 5 C 0.066 3.934 6 O -0.381 6.381 7 C 0.045 3.955 8 C 0.072 3.928 9 N -0.635 5.635 10 C 0.697 3.303 11 O -0.603 6.603 12 N -0.725 5.725 13 C 0.173 3.827 14 H 0.066 0.934 15 C -0.121 4.121 16 C -0.088 4.088 17 C 0.040 3.960 18 H 0.000 1.000 19 C -0.527 4.527 20 H 0.061 0.939 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.954 3.046 24 H -0.262 1.262 25 H -0.285 1.285 26 H -0.283 1.283 27 C -0.105 4.105 28 H 0.229 0.771 29 H 0.132 0.868 30 H 0.049 0.951 31 H 0.140 0.860 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.404 0.596 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.259 0.741 41 H 0.075 0.925 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 20.038 5.161 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C 0.140 3.860 4 H 0.128 0.872 5 C -0.012 4.012 6 O -0.299 6.299 7 C -0.032 4.032 8 C -0.050 4.050 9 N -0.374 5.374 10 C 0.399 3.601 11 O -0.483 6.483 12 N -0.382 5.382 13 C 0.068 3.932 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.126 4.126 17 C 0.021 3.979 18 H 0.018 0.982 19 C -0.565 4.565 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.560 5.560 23 Si 0.780 3.220 24 H -0.186 1.186 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.143 4.143 28 H 0.246 0.754 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.242 0.758 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.174 20.186 5.223 22.050 hybrid contribution -0.041 -1.488 -0.670 1.633 sum 7.133 18.698 4.552 20.523 Atomic orbital electron populations 1.25230 0.96532 0.99226 0.98229 1.22370 0.94228 1.01209 1.02799 1.18575 0.84417 0.82774 1.00253 0.87230 1.22891 0.81404 0.99147 0.97744 1.87983 1.21351 1.36128 1.84409 1.23189 1.02768 0.82342 0.94948 1.22660 0.79191 1.01239 1.01877 1.47507 1.08710 1.08513 1.72692 1.16178 0.84941 0.81005 0.77958 1.91014 1.14856 1.83097 1.59292 1.45493 1.12487 1.05633 1.74636 1.21297 0.91619 0.83923 0.96377 0.91583 1.22506 0.99282 0.97714 0.96504 1.22066 0.98820 0.92970 0.98758 1.19538 0.94289 0.92227 0.91833 0.98230 1.21508 1.01413 1.09574 1.24029 0.92126 1.25783 0.96635 1.00211 0.96179 1.70117 1.21017 1.35446 1.29437 0.85562 0.79523 0.79057 0.77834 1.18614 1.21125 1.20898 1.22550 0.99316 0.92827 0.99572 0.75416 0.84997 0.93222 0.84282 0.92953 0.88354 0.88005 0.75761 0.93453 0.92552 0.94483 0.94334 0.93248 0.90686 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 17.75 74.32 1.32 -3.42 16 2 C -0.21 -5.63 10.08 31.13 0.31 -5.32 16 3 C 0.24 5.26 3.51 43.02 0.15 5.41 16 4 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 5 C 0.07 1.12 6.23 71.94 0.45 1.57 16 6 O -0.38 -6.29 10.74 -148.98 -1.60 -7.89 16 7 C 0.04 0.58 6.98 72.08 0.50 1.09 16 8 C 0.07 1.07 6.58 86.36 0.57 1.64 16 9 N -0.63 -14.79 3.03 -822.30 -2.49 -17.28 16 10 C 0.70 21.80 8.21 179.05 1.47 23.27 16 11 O -0.60 -23.35 12.10 -3.98 -0.05 -23.39 16 12 N -0.73 -21.35 4.90 -454.36 -2.23 -23.58 16 13 C 0.17 6.26 3.19 45.72 0.15 6.40 16 14 H 0.07 2.58 7.68 -2.39 -0.02 2.56 16 15 C -0.12 -4.83 6.59 31.32 0.21 -4.63 16 16 C -0.09 -4.13 5.56 31.67 0.18 -3.95 16 17 C 0.04 1.96 2.82 -10.25 -0.03 1.93 16 18 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 19 C -0.53 -28.03 8.54 25.60 0.22 -27.81 16 20 H 0.06 3.09 7.78 -2.91 -0.02 3.07 16 21 C 0.01 0.57 5.33 84.66 0.45 1.03 16 22 N -0.92 -53.32 12.02 21.45 0.26 -53.07 16 23 Si 0.95 42.69 29.54 68.60 2.03 44.71 16 24 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.10 -3.99 5.94 31.67 0.19 -3.80 16 28 H 0.23 4.89 7.80 -4.42 -0.03 4.85 16 29 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.32 5.77 -2.39 -0.01 1.30 16 35 H 0.40 9.52 5.90 -92.70 -0.55 8.98 16 36 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 38 H 0.04 1.95 7.37 -2.39 -0.02 1.93 16 39 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 40 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 41 H 0.07 2.64 7.63 -2.39 -0.02 2.62 16 42 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -69.48 338.43 2.52 -66.96 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.47 Total: 20.12 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.13 Total: -6.60 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -4.46 Total: -93.92 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.65 Total: -31.28 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -69.48 2.52 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491370799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.852 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds