Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 C 1.53007 * 109.47292 * 239.99760 * 2 1 3 5 5 O 1.45202 * 109.46839 * 120.00226 * 2 1 3 6 6 C 1.34653 * 117.00508 * 60.00159 * 5 2 1 7 7 O 1.21523 * 119.99584 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00245 * 179.97438 * 6 5 2 9 9 C 1.40197 * 120.00182 * 185.30976 * 8 6 5 10 10 C 1.38842 * 119.99229 * 33.28080 * 9 8 6 11 11 C 1.38074 * 120.00269 * 180.02562 * 10 9 8 12 12 C 1.38874 * 119.99872 * 359.97438 * 11 10 9 13 13 N 1.39909 * 120.00533 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00037 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47526 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99941 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47059 * 119.99555 * 19 17 15 22 22 H 1.48502 * 109.46785 * 239.99852 * 19 17 15 23 23 C 1.38877 * 119.98836 * 0.28179 * 12 11 10 24 24 C 1.38074 * 119.99368 * 359.44005 * 23 12 11 25 25 H 1.08992 * 109.47712 * 300.00122 * 1 2 3 26 26 H 1.09007 * 109.46946 * 60.00165 * 1 2 3 27 27 H 1.09005 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46979 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46940 * 299.99993 * 3 2 1 30 30 H 1.09005 * 109.46888 * 59.99743 * 3 2 1 31 31 H 1.09000 * 109.46890 * 300.00227 * 4 2 1 32 32 H 1.08997 * 109.46553 * 60.00365 * 4 2 1 33 33 H 1.09001 * 109.46555 * 180.02562 * 4 2 1 34 34 H 0.97000 * 120.00306 * 5.31689 * 8 6 5 35 35 H 1.07997 * 119.99898 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.99911 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00453 * 0.02562 * 13 12 11 38 38 H 1.08997 * 109.47461 * 300.00182 * 14 13 12 39 39 H 1.09000 * 109.47580 * 60.00155 * 14 13 12 40 40 H 0.96994 * 120.00297 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.00160 * 179.72252 * 23 12 11 42 42 H 1.08002 * 119.99695 * 180.27851 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9725 1.3384 7 8 0.9507 -2.5097 0.5039 8 7 2.0679 -2.6659 2.4167 9 6 1.7855 -4.0352 2.5213 10 6 1.7368 -4.8230 1.3790 11 6 1.4582 -6.1714 1.4818 12 6 1.2272 -6.7398 2.7276 13 7 0.9454 -8.1062 2.8319 14 6 0.7011 -8.7055 4.1462 15 6 0.4243 -10.1779 3.9834 16 1 0.4293 -10.6227 2.9993 17 6 0.1635 -10.9570 5.0906 18 7 0.1568 -10.4153 6.2890 19 14 -0.1789 -12.7822 4.8888 20 1 -0.1127 -13.1421 3.4496 21 1 0.8357 -13.5624 5.6418 22 1 -1.5326 -13.0929 5.4145 23 6 1.2707 -5.9505 3.8695 24 6 1.5550 -4.6032 3.7669 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.5625 -2.2176 3.1205 35 1 1.9161 -4.3810 0.4101 36 1 1.4199 -6.7842 0.5932 37 1 0.9117 -8.6568 2.0340 38 1 1.5796 -8.5690 4.7768 39 1 -0.1585 -8.2232 4.6115 40 1 -0.0262 -10.9634 7.0680 41 1 1.0866 -6.3914 4.8381 42 1 1.5933 -3.9903 4.6553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496621603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -59.051029 kcal Electronic energy + Delta-G solvation = -22674.564118 eV Core-core repulsion = 19233.421602 eV Total energy + Delta-G solvation = -3441.142516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.99711 -39.12463 -37.34043 -35.41345 -34.41818 -33.56090 -32.28169 -30.47633 -28.46794 -27.65148 -27.57729 -26.14819 -23.53720 -22.77895 -21.86442 -20.64944 -19.90376 -18.27180 -17.41697 -17.07044 -16.37536 -16.12295 -15.68818 -15.12801 -14.71169 -14.58991 -14.15237 -13.83934 -13.57298 -13.31821 -13.07901 -12.88324 -12.74454 -12.49239 -12.18503 -12.12984 -12.08586 -12.05443 -11.96179 -11.63567 -11.45539 -11.03222 -10.87284 -10.71632 -10.55690 -10.25107 -10.20789 -9.88228 -9.39126 -8.93089 -8.51584 -8.39181 -6.41543 -6.22499 -4.27432 1.86646 1.94201 2.18309 2.91953 3.21237 3.28855 3.32419 4.08935 4.24807 4.39959 4.48780 4.53216 4.58169 4.67456 5.14988 5.21646 5.26983 5.30043 5.38757 5.44808 5.48598 5.53973 5.64306 5.73535 5.82565 5.89634 5.99910 6.09344 6.15765 6.31610 6.42960 6.54001 6.77080 6.92347 6.95365 7.09512 7.40272 7.41289 7.50838 7.64012 7.93290 8.27571 8.39170 8.65777 8.89330 9.39112 10.88182 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049692 B = 0.002458 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.331818 B =11386.559982 C =11644.883429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.555 6.555 8 N -0.642 5.642 9 C 0.061 3.939 10 C -0.063 4.063 11 C -0.200 4.200 12 C 0.228 3.772 13 N -0.729 5.729 14 C 0.250 3.750 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.904 3.096 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.185 4.185 24 C -0.084 4.084 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.409 0.591 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.392 0.608 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.265 0.735 41 H 0.130 0.870 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.546 21.346 -10.312 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.400 3.600 7 O -0.443 6.443 8 N -0.294 5.294 9 C -0.033 4.033 10 C -0.084 4.084 11 C -0.224 4.224 12 C 0.118 3.882 13 N -0.351 5.351 14 C 0.129 3.871 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.209 4.209 24 C -0.105 4.105 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.225 0.775 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.132 21.014 -10.378 23.798 hybrid contribution -0.049 -0.937 0.061 0.940 sum 4.083 20.077 -10.317 22.939 Atomic orbital electron populations 1.22524 0.93939 1.05321 1.02372 1.22054 0.94426 0.91407 0.82117 1.21859 1.02204 0.92612 1.03066 1.22525 1.01520 1.03683 0.96396 1.86284 1.71516 1.23815 1.46563 1.18068 0.78889 0.80351 0.82723 1.90911 1.40033 1.70087 1.43249 1.41909 1.58044 1.07987 1.21432 1.17052 1.11322 0.80302 0.94583 1.20677 0.97902 0.92370 0.97433 1.20411 1.11143 0.94937 0.95884 1.18119 0.91367 0.85517 0.93237 1.45577 1.74112 1.04326 1.11112 1.19121 0.95953 0.92832 0.79236 1.21241 1.49700 0.92963 0.93763 0.91915 1.24933 0.94889 0.99269 0.94940 1.69946 1.48359 1.36268 0.98116 0.86356 0.77987 0.84230 0.78343 1.19644 1.20775 1.20777 1.20534 1.09143 0.92946 0.98269 1.20489 0.99742 0.95033 0.95207 0.92200 0.91224 0.89150 0.91504 0.90184 0.91502 0.89215 0.91199 0.92195 0.75564 0.85665 0.86445 0.77493 0.96102 0.96123 0.92510 0.85181 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.75 8.37 37.16 0.31 -1.43 16 5 O -0.37 -4.31 9.94 -40.36 -0.40 -4.71 16 6 C 0.65 8.86 7.80 54.05 0.42 9.29 16 7 O -0.55 -8.78 9.57 -19.29 -0.18 -8.96 16 8 N -0.64 -8.27 5.36 -14.22 -0.08 -8.35 16 9 C 0.06 0.94 6.28 -83.59 -0.53 0.41 16 10 C -0.06 -1.04 8.65 -39.42 -0.34 -1.38 16 11 C -0.20 -3.44 9.89 -39.41 -0.39 -3.83 16 12 C 0.23 4.37 6.66 -83.70 -0.56 3.82 16 13 N -0.73 -15.38 5.73 -59.76 -0.34 -15.73 16 14 C 0.25 6.27 4.67 -5.19 -0.02 6.24 16 15 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 16 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.37 13.29 55.43 0.74 -24.63 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.19 -3.41 9.31 -39.40 -0.37 -3.77 16 24 C -0.08 -1.30 9.95 -39.42 -0.39 -1.70 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.41 4.04 8.93 -40.82 -0.36 3.68 16 35 H 0.13 2.03 6.41 -52.49 -0.34 1.69 16 36 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.39 7.72 8.33 -40.82 -0.34 7.38 16 38 H 0.02 0.56 7.96 -51.93 -0.41 0.15 16 39 H 0.02 0.56 7.94 -51.93 -0.41 0.15 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.13 2.52 6.73 -52.49 -0.35 2.16 16 42 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -29.88 346.47 -7.98 -37.86 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.17 Total: 9.95 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.74 Total: -6.43 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.32 Total: -48.71 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.59 Total: -13.67 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.88 -7.98 -37.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496621603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.191 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds