Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47254 * 2 1 4 4 C 1.53007 * 109.47292 * 239.99760 * 2 1 3 5 5 O 1.45202 * 109.46839 * 120.00226 * 2 1 3 6 6 C 1.34653 * 117.00508 * 60.00159 * 5 2 1 7 7 O 1.21523 * 119.99584 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00245 * 179.97438 * 6 5 2 9 9 C 1.40197 * 120.00182 * 185.30976 * 8 6 5 10 10 C 1.38842 * 119.99229 * 33.28080 * 9 8 6 11 11 C 1.38074 * 120.00269 * 180.02562 * 10 9 8 12 12 C 1.38874 * 119.99872 * 359.97438 * 11 10 9 13 13 N 1.39909 * 120.00533 * 180.02562 * 12 11 10 14 14 C 1.46500 * 120.00037 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47526 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99941 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00340 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00210 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47059 * 119.99555 * 19 17 15 22 22 H 1.48502 * 109.46785 * 239.99852 * 19 17 15 23 23 C 1.38877 * 119.98836 * 0.28179 * 12 11 10 24 24 C 1.38074 * 119.99368 * 359.44005 * 23 12 11 25 25 H 1.08992 * 109.47712 * 300.00122 * 1 2 3 26 26 H 1.09007 * 109.46946 * 60.00165 * 1 2 3 27 27 H 1.09005 * 109.47353 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46979 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46940 * 299.99993 * 3 2 1 30 30 H 1.09005 * 109.46888 * 59.99743 * 3 2 1 31 31 H 1.09000 * 109.46890 * 300.00227 * 4 2 1 32 32 H 1.08997 * 109.46553 * 60.00365 * 4 2 1 33 33 H 1.09001 * 109.46555 * 180.02562 * 4 2 1 34 34 H 0.97000 * 120.00306 * 5.31689 * 8 6 5 35 35 H 1.07997 * 119.99898 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.99911 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00453 * 0.02562 * 13 12 11 38 38 H 1.08997 * 109.47461 * 300.00182 * 14 13 12 39 39 H 1.09000 * 109.47580 * 60.00155 * 14 13 12 40 40 H 0.96994 * 120.00297 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.00160 * 179.72252 * 23 12 11 42 42 H 1.08002 * 119.99695 * 180.27851 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9725 1.3384 7 8 0.9507 -2.5097 0.5039 8 7 2.0679 -2.6659 2.4167 9 6 1.7855 -4.0352 2.5213 10 6 1.7368 -4.8230 1.3790 11 6 1.4582 -6.1714 1.4818 12 6 1.2272 -6.7398 2.7276 13 7 0.9454 -8.1062 2.8319 14 6 0.7011 -8.7055 4.1462 15 6 0.4243 -10.1779 3.9834 16 1 0.4293 -10.6227 2.9993 17 6 0.1635 -10.9570 5.0906 18 7 0.1568 -10.4153 6.2890 19 14 -0.1789 -12.7822 4.8888 20 1 -0.1127 -13.1421 3.4496 21 1 0.8357 -13.5624 5.6418 22 1 -1.5326 -13.0929 5.4145 23 6 1.2707 -5.9505 3.8695 24 6 1.5550 -4.6032 3.7669 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 2.5625 -2.2176 3.1205 35 1 1.9161 -4.3810 0.4101 36 1 1.4199 -6.7842 0.5932 37 1 0.9117 -8.6568 2.0340 38 1 1.5796 -8.5690 4.7768 39 1 -0.1585 -8.2232 4.6115 40 1 -0.0262 -10.9634 7.0680 41 1 1.0866 -6.3914 4.8381 42 1 1.5933 -3.9903 4.6553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496621603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = -77.858136 kcal Electronic energy + Delta-G solvation = -22675.379656 eV Core-core repulsion = 19233.421602 eV Total energy + Delta-G solvation = -3441.958054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -42.04261 -40.40015 -38.48421 -36.81852 -35.61188 -34.88488 -33.97620 -31.85456 -30.12876 -28.32911 -28.25990 -27.83667 -25.17067 -23.99311 -23.39557 -21.91850 -20.98040 -19.33400 -19.05446 -18.41076 -17.55787 -17.27970 -17.04969 -16.83476 -15.99532 -15.57577 -15.35539 -15.10467 -15.01922 -14.65356 -14.46804 -14.21586 -13.99558 -13.71058 -13.52414 -13.29067 -13.13506 -12.88021 -12.83055 -12.81779 -12.69463 -12.54118 -12.29904 -12.23557 -11.98119 -11.59602 -11.39730 -11.35690 -11.02662 -10.75067 -10.09772 -9.81715 -8.30373 -7.94357 -6.43433 0.53399 0.58875 1.14940 1.41180 1.41507 1.54645 1.79215 2.34459 2.91134 3.00704 3.05866 3.15822 3.77945 3.82992 3.97692 4.01623 4.12541 4.47483 4.52160 4.62345 4.63943 4.65280 4.78982 4.80325 4.87888 4.91774 4.94300 5.13488 5.15293 5.20344 5.32264 5.32628 5.35975 5.39837 5.46889 5.53522 5.56808 5.66524 5.88322 6.08335 6.42387 6.48921 6.76202 7.15873 7.30242 7.34174 8.81539 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.049692 B = 0.002458 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.331818 B =11386.559982 C =11644.883429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.645 3.355 7 O -0.577 6.577 8 N -0.635 5.635 9 C 0.076 3.924 10 C -0.070 4.070 11 C -0.193 4.193 12 C 0.201 3.799 13 N -0.735 5.735 14 C 0.272 3.728 15 C -0.557 4.557 16 H 0.069 0.931 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.977 3.023 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.200 4.200 24 C -0.077 4.077 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.425 0.575 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.397 0.603 38 H -0.005 1.005 39 H -0.008 1.008 40 H 0.269 0.731 41 H 0.112 0.888 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.979 22.882 -11.518 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.278 6.278 6 C 0.400 3.600 7 O -0.466 6.466 8 N -0.288 5.288 9 C -0.018 4.018 10 C -0.090 4.090 11 C -0.216 4.216 12 C 0.094 3.906 13 N -0.362 5.362 14 C 0.149 3.851 15 C -0.595 4.595 16 H 0.088 0.912 17 C -0.191 4.191 18 N -0.564 5.564 19 Si 0.800 3.200 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.224 4.224 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.264 0.736 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.231 0.769 38 H 0.013 0.987 39 H 0.010 0.990 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.592 22.625 -11.603 25.838 hybrid contribution -0.158 -1.180 0.367 1.246 sum 4.434 21.445 -11.236 24.613 Atomic orbital electron populations 1.22486 0.94123 1.03617 1.03633 1.22457 0.94502 0.92796 0.81367 1.21887 1.02515 0.90375 1.04399 1.22489 1.01724 1.02255 0.97363 1.86311 1.71283 1.22550 1.47673 1.18178 0.78521 0.80974 0.82357 1.90918 1.40936 1.70762 1.44011 1.41792 1.58064 1.07016 1.21959 1.17115 1.09096 0.81436 0.94155 1.20814 0.97962 0.92150 0.98102 1.20543 1.10082 0.95440 0.95567 1.18325 0.93089 0.84790 0.94393 1.45213 1.76054 1.05289 1.09601 1.18578 0.93533 0.92341 0.80685 1.21624 1.49686 0.93922 0.94252 0.91248 1.25896 0.94465 1.04211 0.94530 1.70069 1.49156 1.38175 0.98994 0.85229 0.77849 0.78151 0.78722 1.18623 1.20193 1.20301 1.20572 1.10129 0.94307 0.97383 1.20682 0.98418 0.94061 0.96569 0.91942 0.89016 0.92207 0.91042 0.87912 0.91122 0.92019 0.89035 0.91793 0.73634 0.85194 0.84984 0.76880 0.98717 0.98975 0.92213 0.87043 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 2 C 0.12 2.15 1.13 -10.79 -0.01 2.14 16 3 C -0.13 -1.40 8.85 71.98 0.64 -0.76 16 4 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 5 O -0.36 -7.87 9.94 -55.63 -0.55 -8.42 16 6 C 0.65 16.83 7.80 129.79 1.01 17.84 16 7 O -0.58 -17.89 9.57 19.77 0.19 -17.70 16 8 N -0.64 -15.18 5.36 -429.30 -2.30 -17.48 16 9 C 0.08 2.25 6.28 38.09 0.24 2.49 16 10 C -0.07 -2.23 8.65 22.38 0.19 -2.04 16 11 C -0.19 -6.60 9.89 22.38 0.22 -6.38 16 12 C 0.20 7.89 6.66 38.16 0.25 8.15 16 13 N -0.74 -32.16 5.73 -342.99 -1.97 -34.13 16 14 C 0.27 14.28 4.67 85.63 0.40 14.68 16 15 C -0.56 -30.63 9.28 25.60 0.24 -30.39 16 16 H 0.07 3.63 7.60 -2.91 -0.02 3.61 16 17 C 0.01 0.49 5.46 84.65 0.46 0.95 16 18 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 19 Si 0.98 42.80 29.54 68.60 2.03 44.83 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.20 -7.54 9.31 22.38 0.21 -7.33 16 24 C -0.08 -2.31 9.95 22.37 0.22 -2.09 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.06 1.47 5.88 -2.38 -0.01 1.45 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.43 7.38 8.93 -92.71 -0.83 6.55 16 35 H 0.13 4.09 6.41 -2.91 -0.02 4.07 16 36 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.40 16.04 8.33 -92.71 -0.77 15.27 16 38 H 0.00 -0.28 7.96 -2.39 -0.02 -0.30 16 39 H -0.01 -0.43 7.94 -2.39 -0.02 -0.45 16 40 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.11 4.58 6.73 -2.91 -0.02 4.56 16 42 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -65.64 346.47 2.40 -63.24 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.56 Total: 31.32 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.28 Total: -7.90 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.98 Total: -105.37 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.36 Total: -26.12 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -65.64 2.40 -63.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496621603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.616 kcal (2) G-P(sol) polarization free energy of solvation -65.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds