Wall clock time and date at job start Tue Mar 31 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47347 * 2 1 4 4 N 1.46507 * 109.46902 * 119.99902 * 2 1 3 5 5 C 1.46496 * 120.00163 * 299.99817 * 4 2 1 6 6 C 1.50701 * 109.47558 * 270.00467 * 5 4 2 7 7 H 1.08003 * 119.99337 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99989 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00371 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99524 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46884 * 90.00286 * 10 8 6 12 12 H 1.48504 * 109.46966 * 210.00033 * 10 8 6 13 13 H 1.48499 * 109.47550 * 329.99882 * 10 8 6 14 14 C 1.34779 * 119.99730 * 120.00224 * 4 2 1 15 15 O 1.21279 * 119.99574 * 179.97438 * 14 4 2 16 16 C 1.50696 * 120.00208 * 0.02562 * 14 4 2 17 17 C 1.52997 * 109.47055 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 14 19 19 C 1.38834 * 120.35130 * 90.00037 * 18 17 16 20 20 C 1.38381 * 118.47948 * 179.97438 * 19 18 17 21 21 C 1.38914 * 119.11288 * 0.02562 * 20 19 18 22 22 O 1.35681 * 119.68381 * 179.97438 * 21 20 19 23 23 N 1.32248 * 120.63427 * 0.02562 * 21 20 19 24 24 C 1.31964 * 121.64280 * 359.68891 * 23 21 20 25 25 H 1.08994 * 109.47401 * 299.99802 * 1 2 3 26 26 H 1.08999 * 109.46894 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47580 * 239.99447 * 2 1 3 29 29 H 1.09000 * 109.47464 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46912 * 300.00428 * 3 2 1 31 31 H 1.09004 * 109.46654 * 59.99865 * 3 2 1 32 32 H 1.09001 * 109.47017 * 30.00375 * 5 4 2 33 33 H 1.08997 * 109.47346 * 150.00062 * 5 4 2 34 34 H 0.97003 * 120.00552 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47328 * 60.00147 * 16 14 4 36 36 H 1.09004 * 109.47043 * 299.99957 * 16 14 4 37 37 H 1.09001 * 109.46832 * 59.99966 * 17 16 14 38 38 H 1.09000 * 109.47611 * 300.00263 * 17 16 14 39 39 H 1.07999 * 120.75739 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.43602 * 179.97438 * 20 19 18 41 41 H 0.96703 * 113.99603 * 89.99119 * 22 21 20 42 42 H 1.08005 * 119.57690 * 180.31048 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1901 2.5268 6 6 2.7031 0.8019 2.9831 7 1 3.5431 1.0357 2.3458 8 6 2.5809 1.4108 4.2140 9 7 1.5584 1.1257 4.9902 10 14 3.8689 2.6399 4.7798 11 1 3.4767 4.0040 4.3433 12 1 3.9703 2.6041 6.2609 13 1 5.1835 2.2886 4.1851 14 6 2.7932 -1.7864 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1578 -2.3009 -0.2961 17 6 4.0378 -3.5446 -0.1557 18 6 4.4019 -4.0595 -1.5244 19 6 5.5494 -3.6072 -2.1618 20 6 5.8470 -4.1063 -3.4177 21 6 4.9924 -5.0369 -3.9950 22 8 5.2727 -5.5335 -5.2261 23 7 3.9077 -5.4428 -3.3566 24 6 3.6005 -4.9893 -2.1560 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2973 2.4844 33 1 1.6237 -1.0226 3.2292 34 1 1.4726 1.5538 5.8564 35 1 3.7030 -1.5301 -0.8407 36 1 2.2496 -2.5577 -0.8416 37 1 3.4929 -4.3156 0.3891 38 1 4.9459 -3.2875 0.3896 39 1 6.1950 -2.8824 -1.6882 40 1 6.7313 -3.7760 -3.9422 41 1 5.8176 -6.3323 -5.2133 42 1 2.7089 -5.3474 -1.6628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519621703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:55 Heat of formation + Delta-G solvation = -53.335332 kcal Electronic energy + Delta-G solvation = -23146.384807 eV Core-core repulsion = 19705.490142 eV Total energy + Delta-G solvation = -3440.894665 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.89 seconds Orbital eigenvalues (eV) -40.68896 -39.25132 -37.48768 -36.03192 -34.10675 -32.83479 -32.23567 -30.83340 -29.63884 -27.32993 -26.72369 -24.78364 -23.91436 -22.77431 -21.65239 -21.03127 -19.05238 -17.94990 -17.12408 -16.86330 -16.46277 -16.19521 -15.21950 -15.12976 -14.91031 -14.48467 -14.25561 -13.53646 -13.46228 -13.36727 -13.30644 -13.12531 -12.41000 -12.28665 -12.10469 -11.94580 -11.83872 -11.63310 -11.47970 -11.16795 -11.02150 -10.87395 -10.85001 -10.56277 -10.37698 -10.06182 -10.01119 -9.61215 -9.54449 -9.05496 -8.77417 -8.42255 -7.64676 -6.03516 -4.06808 0.76853 1.01441 3.25252 3.28947 3.35864 3.38144 3.44493 3.58535 3.92600 4.43545 4.46364 4.61546 4.75508 4.79190 5.02733 5.17027 5.20641 5.29371 5.30370 5.38057 5.45976 5.56875 5.66242 5.69898 5.77863 5.84607 6.01230 6.14752 6.16245 6.24604 6.27224 6.35619 6.35965 6.59403 6.94880 7.11978 7.21821 7.47673 7.57632 7.70372 7.93363 8.25853 8.45541 8.91726 9.10557 9.57355 11.04645 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.003322 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.147587 B = 8425.977967 C = 8759.839064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.246 3.754 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.504 3.496 15 O -0.543 6.543 16 C -0.135 4.135 17 C -0.061 4.061 18 C -0.133 4.133 19 C -0.058 4.058 20 C -0.182 4.182 21 C 0.296 3.704 22 O -0.485 6.485 23 N -0.502 5.502 24 C 0.125 3.875 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.398 0.602 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -8.387 -17.048 19.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.325 5.325 5 C 0.127 3.873 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.535 5.535 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.176 4.176 17 C -0.099 4.099 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.204 4.204 21 C 0.118 3.882 22 O -0.292 6.292 23 N -0.220 5.220 24 C -0.032 4.032 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.255 0.745 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.057 -8.770 -16.988 19.544 hybrid contribution 1.478 1.064 0.754 1.971 sum 5.535 -7.706 -16.234 18.803 Atomic orbital electron populations 1.22157 0.95618 1.01790 1.02443 1.20999 0.94102 0.94128 0.87967 1.22140 1.01299 0.95760 1.02300 1.48343 1.49094 1.26409 1.08614 1.19228 0.95856 0.94962 0.77301 1.21434 1.08877 1.23344 1.02067 0.92425 1.24925 0.95751 0.97141 0.96373 1.69925 1.29572 1.43278 1.10714 0.86555 0.82028 0.81259 0.77921 1.20719 1.21176 1.19963 1.20281 0.79243 0.81011 0.90427 1.90671 1.53469 1.58242 1.39746 1.21694 1.00867 0.98090 0.96912 1.20287 1.01276 0.97227 0.91141 1.21076 0.95908 0.97968 0.98575 1.21520 0.95924 0.97395 0.93523 1.22101 1.01308 1.00651 0.96297 1.19181 0.90216 0.93638 0.85212 1.84788 1.74119 1.47310 1.22938 1.67168 1.18068 1.27623 1.09173 1.22493 0.98629 0.93088 0.88959 0.91298 0.92315 0.92912 0.90739 0.92798 0.93305 0.90062 0.94857 0.94097 0.92800 0.89510 0.89536 0.89635 0.89685 0.84104 0.84305 0.74508 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.17 37.16 0.34 -1.99 16 2 C 0.13 2.10 3.17 -67.93 -0.22 1.88 16 3 C -0.16 -2.53 8.47 37.16 0.31 -2.22 16 4 N -0.59 -11.99 2.39 -167.47 -0.40 -12.39 16 5 C 0.25 6.20 4.59 -5.20 -0.02 6.18 16 6 C -0.52 -14.16 7.83 -34.44 -0.27 -14.43 16 7 H 0.06 1.57 7.63 -52.48 -0.40 1.17 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 10 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.50 9.87 7.67 -10.99 -0.08 9.79 16 15 O -0.54 -12.99 15.56 5.56 0.09 -12.90 16 16 C -0.14 -1.83 3.99 -27.89 -0.11 -1.95 16 17 C -0.06 -0.75 4.66 -27.88 -0.13 -0.88 16 18 C -0.13 -1.43 5.15 -104.47 -0.54 -1.97 16 19 C -0.06 -0.56 9.85 -39.31 -0.39 -0.95 16 20 C -0.18 -1.71 10.04 -39.28 -0.39 -2.10 16 21 C 0.30 3.25 7.74 -17.12 -0.13 3.11 16 22 O -0.48 -4.55 13.56 -18.75 -0.25 -4.80 16 23 N -0.50 -6.20 10.39 -13.33 -0.14 -6.34 16 24 C 0.13 1.38 10.85 -17.57 -0.19 1.19 16 25 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.98 5.76 -51.93 -0.30 0.68 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.56 6.92 -51.93 -0.36 1.20 16 32 H 0.03 0.86 6.43 -51.93 -0.33 0.52 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.07 7.79 -51.93 -0.40 0.67 16 36 H 0.09 1.02 7.79 -51.93 -0.40 0.61 16 37 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 38 H 0.08 1.12 8.05 -51.93 -0.42 0.71 16 39 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.40 1.67 9.06 45.56 0.41 2.08 16 42 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -34.23 351.31 -7.07 -41.30 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.45 Total: 1.57 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.92 Total: -2.75 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.20 Total: -44.23 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.17 Total: -17.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.23 -7.07 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519621703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.89 seconds