Wall clock time and date at job start Tue Mar 31 2020 07:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47347 * 2 1 4 4 N 1.46507 * 109.46902 * 119.99902 * 2 1 3 5 5 C 1.46496 * 120.00163 * 299.99817 * 4 2 1 6 6 C 1.50701 * 109.47558 * 270.00467 * 5 4 2 7 7 H 1.08003 * 119.99337 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99989 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00371 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99524 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46884 * 90.00286 * 10 8 6 12 12 H 1.48504 * 109.46966 * 210.00033 * 10 8 6 13 13 H 1.48499 * 109.47550 * 329.99882 * 10 8 6 14 14 C 1.34779 * 119.99730 * 120.00224 * 4 2 1 15 15 O 1.21279 * 119.99574 * 179.97438 * 14 4 2 16 16 C 1.50696 * 120.00208 * 0.02562 * 14 4 2 17 17 C 1.52997 * 109.47055 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47238 * 179.97438 * 17 16 14 19 19 C 1.38834 * 120.35130 * 90.00037 * 18 17 16 20 20 C 1.38381 * 118.47948 * 179.97438 * 19 18 17 21 21 C 1.38914 * 119.11288 * 0.02562 * 20 19 18 22 22 O 1.35681 * 119.68381 * 179.97438 * 21 20 19 23 23 N 1.32248 * 120.63427 * 0.02562 * 21 20 19 24 24 C 1.31964 * 121.64280 * 359.68891 * 23 21 20 25 25 H 1.08994 * 109.47401 * 299.99802 * 1 2 3 26 26 H 1.08999 * 109.46894 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47580 * 239.99447 * 2 1 3 29 29 H 1.09000 * 109.47464 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46912 * 300.00428 * 3 2 1 31 31 H 1.09004 * 109.46654 * 59.99865 * 3 2 1 32 32 H 1.09001 * 109.47017 * 30.00375 * 5 4 2 33 33 H 1.08997 * 109.47346 * 150.00062 * 5 4 2 34 34 H 0.97003 * 120.00552 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47328 * 60.00147 * 16 14 4 36 36 H 1.09004 * 109.47043 * 299.99957 * 16 14 4 37 37 H 1.09001 * 109.46832 * 59.99966 * 17 16 14 38 38 H 1.09000 * 109.47611 * 300.00263 * 17 16 14 39 39 H 1.07999 * 120.75739 * 359.97438 * 19 18 17 40 40 H 1.07999 * 120.43602 * 179.97438 * 20 19 18 41 41 H 0.96703 * 113.99603 * 89.99119 * 22 21 20 42 42 H 1.08005 * 119.57690 * 180.31048 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1901 2.5268 6 6 2.7031 0.8019 2.9831 7 1 3.5431 1.0357 2.3458 8 6 2.5809 1.4108 4.2140 9 7 1.5584 1.1257 4.9902 10 14 3.8689 2.6399 4.7798 11 1 3.4767 4.0040 4.3433 12 1 3.9703 2.6041 6.2609 13 1 5.1835 2.2886 4.1851 14 6 2.7932 -1.7864 1.0726 15 8 3.1977 -2.3579 2.0629 16 6 3.1578 -2.3009 -0.2961 17 6 4.0378 -3.5446 -0.1557 18 6 4.4019 -4.0595 -1.5244 19 6 5.5494 -3.6072 -2.1618 20 6 5.8470 -4.1063 -3.4177 21 6 4.9924 -5.0369 -3.9950 22 8 5.2727 -5.5335 -5.2261 23 7 3.9077 -5.4428 -3.3566 24 6 3.6005 -4.9893 -2.1560 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.6904 0.2973 2.4844 33 1 1.6237 -1.0226 3.2292 34 1 1.4726 1.5538 5.8564 35 1 3.7030 -1.5301 -0.8407 36 1 2.2496 -2.5577 -0.8416 37 1 3.4929 -4.3156 0.3891 38 1 4.9459 -3.2875 0.3896 39 1 6.1950 -2.8824 -1.6882 40 1 6.7313 -3.7760 -3.9422 41 1 5.8176 -6.3323 -5.2133 42 1 2.7089 -5.3474 -1.6628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519621703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:52 Heat of formation + Delta-G solvation = -78.720894 kcal Electronic energy + Delta-G solvation = -23147.485607 eV Core-core repulsion = 19705.490142 eV Total energy + Delta-G solvation = -3441.995466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -41.49397 -40.75379 -38.24742 -37.54560 -35.21586 -34.77551 -33.05955 -32.38499 -30.79306 -29.04374 -27.96401 -26.08522 -24.67859 -24.42016 -22.81550 -22.25494 -19.75477 -19.44113 -18.58443 -18.24981 -17.90974 -16.96622 -16.87325 -16.38690 -16.10958 -15.95439 -15.23587 -14.83029 -14.72570 -14.58350 -14.26107 -14.11269 -14.06091 -13.67853 -13.35382 -13.30427 -12.97835 -12.86158 -12.78474 -12.76118 -12.51547 -12.44691 -12.20349 -12.08031 -11.97348 -11.62456 -11.49643 -10.83092 -10.59355 -10.53662 -10.36996 -9.70896 -9.37626 -8.17615 -6.29477 0.00749 0.26754 1.36799 1.39391 1.49164 1.89990 2.32955 2.46599 2.57999 2.86719 3.12163 3.56867 3.77294 3.94033 3.98555 4.01030 4.05964 4.24435 4.28548 4.33985 4.44639 4.50598 4.64223 4.76258 4.87016 4.89392 4.95751 5.03697 5.05665 5.07385 5.14954 5.21348 5.27677 5.37567 5.45712 5.59197 5.61808 5.67121 5.92832 6.13966 6.65791 6.77062 6.89298 6.96004 7.34323 7.55823 8.89631 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023094 B = 0.003322 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.147587 B = 8425.977967 C = 8759.839064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.152 4.152 4 N -0.599 5.599 5 C 0.264 3.736 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.493 3.507 15 O -0.597 6.597 16 C -0.120 4.120 17 C -0.052 4.052 18 C -0.136 4.136 19 C -0.056 4.056 20 C -0.178 4.178 21 C 0.289 3.711 22 O -0.495 6.495 23 N -0.531 5.531 24 C 0.120 3.880 25 H 0.037 0.963 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.023 0.977 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.418 0.582 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -7.753 -19.888 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.023 3.977 3 C -0.210 4.210 4 N -0.330 5.330 5 C 0.142 3.858 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.196 1.196 14 C 0.283 3.717 15 O -0.479 6.479 16 C -0.159 4.159 17 C -0.090 4.090 18 C -0.138 4.138 19 C -0.082 4.082 20 C -0.199 4.199 21 C 0.110 3.890 22 O -0.305 6.305 23 N -0.250 5.250 24 C -0.037 4.037 25 H 0.056 0.944 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.010 0.990 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.279 0.721 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.261 -8.139 -19.885 22.121 hybrid contribution 1.099 0.804 1.567 2.076 sum 6.360 -7.336 -18.318 20.732 Atomic orbital electron populations 1.22125 0.94538 1.02232 1.02646 1.21400 0.95053 0.94002 0.87261 1.22083 1.00735 0.95914 1.02291 1.48395 1.49384 1.27089 1.08122 1.18621 0.95117 0.92598 0.79445 1.21674 1.08950 1.23415 1.02203 0.92684 1.25809 0.97812 0.99153 0.96589 1.70053 1.31435 1.44607 1.11144 0.85510 0.79275 0.79344 0.77268 1.19109 1.21046 1.19627 1.21408 0.77886 0.80056 0.92386 1.90641 1.55316 1.59704 1.42249 1.21669 1.02544 0.98935 0.92783 1.20116 1.00358 0.96484 0.92071 1.20839 0.96734 0.98606 0.97591 1.21761 0.95527 0.97298 0.93591 1.22308 1.01698 0.99756 0.96099 1.19460 0.90165 0.93920 0.85447 1.84734 1.74711 1.48650 1.22387 1.67183 1.19207 1.28680 1.09885 1.22669 0.99119 0.93073 0.88798 0.94424 0.88691 0.92397 0.86624 0.93580 0.89394 0.93915 0.95950 0.99044 0.92687 0.87222 0.86798 0.90564 0.90908 0.82415 0.81882 0.72102 0.81144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 9.17 71.98 0.66 -3.60 16 2 C 0.13 3.71 3.17 44.99 0.14 3.85 16 3 C -0.15 -4.64 8.47 71.98 0.61 -4.03 16 4 N -0.60 -24.39 2.39 -802.14 -1.91 -26.30 16 5 C 0.26 13.96 4.59 85.63 0.39 14.36 16 6 C -0.52 -29.46 7.83 25.60 0.20 -29.26 16 7 H 0.05 3.05 7.63 -2.91 -0.02 3.03 16 8 C 0.00 0.26 5.46 84.66 0.46 0.72 16 9 N -0.93 -56.46 13.29 21.44 0.28 -56.17 16 10 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.49 19.34 7.67 87.66 0.67 20.01 16 15 O -0.60 -29.67 15.56 -3.03 -0.05 -29.71 16 16 C -0.12 -2.96 3.99 29.85 0.12 -2.85 16 17 C -0.05 -1.21 4.66 29.85 0.14 -1.07 16 18 C -0.14 -2.61 5.15 -19.77 -0.10 -2.72 16 19 C -0.06 -0.92 9.85 22.45 0.22 -0.70 16 20 C -0.18 -2.79 10.04 22.47 0.23 -2.56 16 21 C 0.29 5.66 7.74 84.79 0.66 6.32 16 22 O -0.49 -8.17 13.56 -89.99 -1.22 -9.39 16 23 N -0.53 -12.16 10.39 -308.95 -3.21 -15.37 16 24 C 0.12 2.43 10.85 84.63 0.92 3.34 16 25 H 0.04 1.24 6.66 -2.39 -0.02 1.23 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 2.52 5.76 -2.39 -0.01 2.50 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.63 6.92 -2.38 -0.02 1.61 16 32 H 0.02 1.22 6.43 -2.39 -0.02 1.21 16 33 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.11 2.28 7.79 -2.39 -0.02 2.26 16 36 H 0.11 2.25 7.79 -2.38 -0.02 2.24 16 37 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 38 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 39 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 40 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.42 2.60 9.06 -74.06 -0.67 1.93 16 42 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -78.22 351.31 1.59 -76.63 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.35 Total: 11.72 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 5.32 Total: 1.82 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.84 Total: -97.84 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.27 Total: -39.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.22 1.59 -76.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519621703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.095 kcal (2) G-P(sol) polarization free energy of solvation -78.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds