Wall clock time and date at job start Tue Mar 31 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21315 * 120.00414 * 2 1 4 4 C 1.46620 * 119.99709 * 179.97438 * 2 1 3 5 5 C 1.41572 * 126.51248 * 180.27900 * 4 2 1 6 6 C 1.36241 * 106.98161 * 180.19550 * 5 4 2 7 7 C 1.46849 * 125.80484 * 179.85648 * 6 5 4 8 8 O 1.21676 * 119.99823 * 185.57632 * 7 6 5 9 9 N 1.34774 * 119.99769 * 5.57110 * 7 6 5 10 10 C 1.46504 * 119.99949 * 173.52256 * 9 7 6 11 11 C 1.50704 * 109.47055 * 89.99704 * 10 9 7 12 12 H 1.08004 * 120.00013 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99452 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00208 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99520 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47019 * 60.00470 * 15 13 11 17 17 H 1.48497 * 109.46756 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46946 * 300.00150 * 15 13 11 19 19 C 1.46500 * 120.00149 * 353.51882 * 9 7 6 20 20 C 1.53007 * 109.47218 * 305.21647 * 19 9 7 21 21 C 1.53001 * 109.46755 * 65.21363 * 19 9 7 22 22 N 1.37845 * 108.39775 * 359.58895 * 6 5 4 23 23 C 1.46498 * 125.34869 * 180.28512 * 22 6 5 24 24 C 1.34117 * 109.30368 * 0.26248 * 22 6 5 25 25 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46903 * 300.00016 * 1 2 3 27 27 H 1.08995 * 109.47176 * 60.00066 * 1 2 3 28 28 H 1.07999 * 126.51462 * 0.06832 * 5 4 2 29 29 H 1.08997 * 109.47058 * 330.00157 * 10 9 7 30 30 H 1.08999 * 109.46885 * 210.00162 * 10 9 7 31 31 H 0.97004 * 120.00107 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47313 * 185.21531 * 19 9 7 33 33 H 1.08999 * 109.46887 * 37.77217 * 20 19 9 34 34 H 1.09003 * 109.46897 * 157.77526 * 20 19 9 35 35 H 1.08994 * 109.47174 * 277.77394 * 20 19 9 36 36 H 1.09000 * 109.46684 * 91.11032 * 21 19 9 37 37 H 1.08997 * 109.47189 * 211.10365 * 21 19 9 38 38 H 1.09001 * 109.47350 * 331.10578 * 21 19 9 39 39 H 1.08997 * 109.46974 * 84.63315 * 23 22 6 40 40 H 1.09001 * 109.47172 * 204.63041 * 23 22 6 41 41 H 1.08997 * 109.46682 * 324.63234 * 23 22 6 42 42 H 1.07995 * 125.82580 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 0.0006 5 6 3.6466 -1.4304 0.0062 6 6 3.8941 -2.7702 0.0001 7 6 5.2213 -3.3986 -0.0001 8 8 5.3226 -4.6063 -0.1083 9 7 6.3272 -2.6376 0.1193 10 6 7.6405 -3.2712 0.2618 11 6 8.2438 -3.4891 -1.1019 12 1 7.7032 -3.1857 -1.9863 13 6 9.4862 -4.0750 -1.2203 14 7 10.1446 -4.4440 -0.1434 15 14 10.2343 -4.3445 -2.9107 16 1 10.3870 -3.0374 -3.5985 17 1 11.5654 -4.9868 -2.7661 18 1 9.3450 -5.2242 -3.7110 19 6 6.2162 -1.1769 0.1065 20 6 5.4798 -0.7324 -1.1590 21 6 5.4369 -0.7139 1.3391 22 7 2.6869 -3.4356 0.0004 23 6 2.5215 -4.8912 0.0008 24 6 1.6876 -2.5411 0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 4.3835 -0.6410 0.0119 29 1 7.5282 -4.2305 0.7669 30 1 8.2935 -2.6256 0.8491 31 1 11.0186 -4.8565 -0.2268 32 1 7.2131 -0.7366 0.1203 33 1 4.6832 -1.4416 -1.3838 34 1 5.0514 0.2574 -1.0013 35 1 6.1803 -0.6964 -1.9932 36 1 6.1322 -0.5137 2.1543 37 1 4.8858 0.1955 1.1001 38 1 4.7378 -1.4937 1.6411 39 1 2.5760 -5.2628 1.0240 40 1 1.5523 -5.1469 -0.4274 41 1 3.3131 -5.3469 -0.5940 42 1 0.6326 -2.7720 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523376541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:24 Heat of formation + Delta-G solvation = 65.595626 kcal Electronic energy + Delta-G solvation = -24576.109281 eV Core-core repulsion = 21140.371849 eV Total energy + Delta-G solvation = -3435.737432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.12975 -39.06562 -38.52894 -36.80940 -33.55662 -32.60074 -31.62726 -30.52704 -28.78188 -27.13092 -26.89892 -26.54544 -23.38907 -22.81318 -21.80993 -20.97818 -18.83857 -17.77769 -17.12407 -16.47663 -15.74056 -15.53283 -15.36419 -14.98105 -14.75951 -14.67859 -14.60551 -14.23509 -13.92113 -13.48841 -13.25808 -12.82377 -12.50307 -12.31185 -12.26812 -12.18419 -12.08416 -11.76670 -11.65087 -11.19848 -11.12451 -10.99891 -10.83663 -10.53283 -10.11539 -9.76381 -9.65624 -9.62684 -9.07605 -8.54284 -8.42991 -7.99318 -7.66475 -6.03927 -4.08242 1.42449 1.88398 2.75384 3.27377 3.33035 3.36828 3.40244 3.84648 3.95023 4.29974 4.45571 4.72531 4.77529 4.94733 5.05667 5.17265 5.20599 5.28295 5.30944 5.31203 5.40657 5.45586 5.56311 5.65161 5.77082 5.88147 5.92005 6.02105 6.11506 6.24900 6.33594 6.55636 6.61788 6.71620 6.92468 7.04326 7.18280 7.39148 7.53443 7.75410 7.92222 8.22343 8.35666 8.87359 9.03165 9.56504 11.04106 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.004672 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.361817 B = 5992.314271 C = 6543.327970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.425 3.575 3 O -0.479 6.479 4 C -0.288 4.288 5 C -0.120 4.120 6 C -0.070 4.070 7 C 0.577 3.423 8 O -0.547 6.547 9 N -0.576 5.576 10 C 0.249 3.751 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.128 3.872 20 C -0.195 4.195 21 C -0.182 4.182 22 N -0.394 5.394 23 C 0.061 3.939 24 C 0.065 3.935 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.220 0.780 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 5.960 1.839 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.306 3.694 3 O -0.356 6.356 4 C -0.296 4.296 5 C -0.142 4.142 6 C -0.181 4.181 7 C 0.364 3.636 8 O -0.427 6.427 9 N -0.307 5.307 10 C 0.131 3.869 11 C -0.563 4.563 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.023 3.977 20 C -0.251 4.251 21 C -0.239 4.239 22 N -0.064 5.064 23 C -0.080 4.080 24 C -0.078 4.078 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.236 0.764 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.128 0.872 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.412 5.363 1.857 19.267 hybrid contribution 0.278 -0.445 -0.940 1.076 sum -18.134 4.919 0.917 18.812 Atomic orbital electron populations 1.22157 0.94709 1.03980 1.04374 1.21471 0.90614 0.86861 0.70496 1.90519 1.72099 1.34172 1.38804 1.20300 0.94734 0.93303 1.21258 1.24395 0.96597 0.96951 0.96209 1.20308 0.86965 0.91381 1.19411 1.16844 0.82591 0.86247 0.77912 1.90736 1.86843 1.13960 1.51191 1.48068 1.08052 1.04967 1.69573 1.19362 0.76125 0.94000 0.97458 1.21390 1.02092 1.40161 0.92633 0.92378 1.24915 0.96885 0.95285 0.96925 1.69915 1.14073 1.41481 1.28037 0.86566 0.78185 0.78461 0.84261 1.20203 1.21199 1.20250 1.21237 1.00938 0.81736 0.93756 1.23230 1.01889 1.01691 0.98307 1.22989 1.00792 1.01892 0.98269 1.43699 1.05255 1.07306 1.50125 1.22390 1.04442 0.76427 1.04715 1.22499 0.93541 0.88296 1.03483 0.90613 0.89299 0.89292 0.76430 0.93870 0.94607 0.92674 0.88224 0.89467 0.90847 0.92180 0.92618 0.90737 0.90754 0.90264 0.89955 0.87230 0.80742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 10.28 36.01 0.37 -1.09 16 2 C 0.43 5.19 7.24 -30.93 -0.22 4.97 16 3 O -0.48 -7.44 17.67 5.53 0.10 -7.34 16 4 C -0.29 -3.80 6.12 -105.11 -0.64 -4.44 16 5 C -0.12 -1.86 4.42 -39.03 -0.17 -2.03 16 6 C -0.07 -1.21 5.26 -82.40 -0.43 -1.65 16 7 C 0.58 12.44 6.89 -12.78 -0.09 12.35 16 8 O -0.55 -13.47 14.32 5.21 0.07 -13.40 16 9 N -0.58 -12.52 2.41 -168.93 -0.41 -12.93 16 10 C 0.25 6.50 5.07 -5.19 -0.03 6.48 16 11 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 12 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.90 -26.50 13.28 55.43 0.74 -25.76 16 15 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.13 2.25 3.26 -67.93 -0.22 2.02 16 20 C -0.19 -3.14 7.91 37.16 0.29 -2.85 16 21 C -0.18 -2.73 8.03 37.16 0.30 -2.43 16 22 N -0.39 -5.48 3.12 -120.05 -0.37 -5.85 16 23 C 0.06 0.71 10.44 59.85 0.63 1.34 16 24 C 0.06 0.72 10.74 -16.41 -0.18 0.54 16 25 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.22 3.35 0.69 -122.34 -0.08 3.27 16 29 H 0.04 1.26 7.52 -51.93 -0.39 0.87 16 30 H 0.04 0.94 7.97 -51.93 -0.41 0.53 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.10 1.75 7.84 -51.93 -0.41 1.34 16 33 H 0.09 1.51 3.94 -64.05 -0.25 1.26 16 34 H 0.07 1.03 6.98 -51.93 -0.36 0.66 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.01 6.55 -51.93 -0.34 0.67 16 38 H 0.07 1.20 5.02 -51.93 -0.26 0.94 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 41 H 0.11 1.61 6.44 -51.93 -0.33 1.27 16 42 H 0.18 1.11 7.03 -52.49 -0.37 0.74 16 LS Contribution 333.50 15.07 5.03 5.03 Total: -1.00 -34.54 333.50 -6.31 -40.86 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.63 Total: 2.76 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.82 Total: -0.29 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.04 Total: -44.54 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.54 -6.31 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523376541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.453 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds