Wall clock time and date at job start Tue Mar 31 2020 07:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21315 * 120.00414 * 2 1 4 4 C 1.46620 * 119.99709 * 179.97438 * 2 1 3 5 5 C 1.41572 * 126.51248 * 180.27900 * 4 2 1 6 6 C 1.36241 * 106.98161 * 180.19550 * 5 4 2 7 7 C 1.46849 * 125.80484 * 179.85648 * 6 5 4 8 8 O 1.21676 * 119.99823 * 185.57632 * 7 6 5 9 9 N 1.34774 * 119.99769 * 5.57110 * 7 6 5 10 10 C 1.46504 * 119.99949 * 173.52256 * 9 7 6 11 11 C 1.50704 * 109.47055 * 89.99704 * 10 9 7 12 12 H 1.08004 * 120.00013 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99452 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00208 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99520 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47019 * 60.00470 * 15 13 11 17 17 H 1.48497 * 109.46756 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46946 * 300.00150 * 15 13 11 19 19 C 1.46500 * 120.00149 * 353.51882 * 9 7 6 20 20 C 1.53007 * 109.47218 * 305.21647 * 19 9 7 21 21 C 1.53001 * 109.46755 * 65.21363 * 19 9 7 22 22 N 1.37845 * 108.39775 * 359.58895 * 6 5 4 23 23 C 1.46498 * 125.34869 * 180.28512 * 22 6 5 24 24 C 1.34117 * 109.30368 * 0.26248 * 22 6 5 25 25 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46903 * 300.00016 * 1 2 3 27 27 H 1.08995 * 109.47176 * 60.00066 * 1 2 3 28 28 H 1.07999 * 126.51462 * 0.06832 * 5 4 2 29 29 H 1.08997 * 109.47058 * 330.00157 * 10 9 7 30 30 H 1.08999 * 109.46885 * 210.00162 * 10 9 7 31 31 H 0.97004 * 120.00107 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.47313 * 185.21531 * 19 9 7 33 33 H 1.08999 * 109.46887 * 37.77217 * 20 19 9 34 34 H 1.09003 * 109.46897 * 157.77526 * 20 19 9 35 35 H 1.08994 * 109.47174 * 277.77394 * 20 19 9 36 36 H 1.09000 * 109.46684 * 91.11032 * 21 19 9 37 37 H 1.08997 * 109.47189 * 211.10365 * 21 19 9 38 38 H 1.09001 * 109.47350 * 331.10578 * 21 19 9 39 39 H 1.08997 * 109.46974 * 84.63315 * 23 22 6 40 40 H 1.09001 * 109.47172 * 204.63041 * 23 22 6 41 41 H 1.08997 * 109.46682 * 324.63234 * 23 22 6 42 42 H 1.07995 * 125.82580 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2400 -1.2698 0.0006 5 6 3.6466 -1.4304 0.0062 6 6 3.8941 -2.7702 0.0001 7 6 5.2213 -3.3986 -0.0001 8 8 5.3226 -4.6063 -0.1083 9 7 6.3272 -2.6376 0.1193 10 6 7.6405 -3.2712 0.2618 11 6 8.2438 -3.4891 -1.1019 12 1 7.7032 -3.1857 -1.9863 13 6 9.4862 -4.0750 -1.2203 14 7 10.1446 -4.4440 -0.1434 15 14 10.2343 -4.3445 -2.9107 16 1 10.3870 -3.0374 -3.5985 17 1 11.5654 -4.9868 -2.7661 18 1 9.3450 -5.2242 -3.7110 19 6 6.2162 -1.1769 0.1065 20 6 5.4798 -0.7324 -1.1590 21 6 5.4369 -0.7139 1.3391 22 7 2.6869 -3.4356 0.0004 23 6 2.5215 -4.8912 0.0008 24 6 1.6876 -2.5411 0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 4.3835 -0.6410 0.0119 29 1 7.5282 -4.2305 0.7669 30 1 8.2935 -2.6256 0.8491 31 1 11.0186 -4.8565 -0.2268 32 1 7.2131 -0.7366 0.1203 33 1 4.6832 -1.4416 -1.3838 34 1 5.0514 0.2574 -1.0013 35 1 6.1803 -0.6964 -1.9932 36 1 6.1322 -0.5137 2.1543 37 1 4.8858 0.1955 1.1001 38 1 4.7378 -1.4937 1.6411 39 1 2.5760 -5.2628 1.0240 40 1 1.5523 -5.1469 -0.4274 41 1 3.3131 -5.3469 -0.5940 42 1 0.6326 -2.7720 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523376541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:18 Heat of formation + Delta-G solvation = 42.888555 kcal Electronic energy + Delta-G solvation = -24577.093934 eV Core-core repulsion = 21140.371849 eV Total energy + Delta-G solvation = -3436.722084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -43.32415 -40.45680 -39.56851 -38.36559 -35.52153 -33.96731 -33.17651 -31.51091 -29.99661 -28.85517 -28.29003 -27.54047 -25.27072 -24.04905 -23.13129 -22.31515 -19.95148 -19.03415 -18.67542 -18.36032 -17.26967 -16.86539 -16.75037 -16.26420 -15.98213 -15.84871 -15.71928 -15.52840 -15.38874 -14.94876 -14.51022 -14.23713 -13.94821 -13.65981 -13.55587 -13.38524 -13.10633 -12.89488 -12.87334 -12.75354 -12.67182 -12.52221 -12.44892 -12.30791 -12.09928 -11.72926 -10.99227 -10.81267 -10.65728 -10.54806 -9.65985 -9.52626 -9.08112 -8.23711 -6.38222 0.52142 0.60526 1.34856 1.38547 1.46148 1.67468 2.20096 2.30800 2.43086 2.50913 3.05338 3.38822 3.64789 3.80490 3.85153 3.96476 4.06114 4.12788 4.36381 4.38358 4.43583 4.58606 4.60970 4.68628 4.75990 4.79537 4.81705 4.83227 4.96588 5.03423 5.08858 5.14863 5.24686 5.30739 5.41520 5.57262 5.62393 5.76130 5.84662 6.03371 6.21857 6.64601 6.71044 6.87665 7.23293 7.38842 8.83066 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.004672 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.361817 B = 5992.314271 C = 6543.327970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.426 3.574 3 O -0.521 6.521 4 C -0.311 4.311 5 C -0.110 4.110 6 C -0.112 4.112 7 C 0.568 3.432 8 O -0.595 6.595 9 N -0.585 5.585 10 C 0.265 3.735 11 C -0.541 4.541 12 H 0.049 0.951 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.122 3.878 20 C -0.183 4.183 21 C -0.168 4.168 22 N -0.401 5.401 23 C 0.060 3.940 24 C 0.112 3.888 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.215 0.785 29 H 0.001 0.999 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.421 7.022 1.050 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.309 3.691 3 O -0.402 6.402 4 C -0.318 4.318 5 C -0.133 4.133 6 C -0.221 4.221 7 C 0.359 3.641 8 O -0.479 6.479 9 N -0.315 5.315 10 C 0.145 3.855 11 C -0.579 4.579 12 H 0.068 0.932 13 C -0.188 4.188 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.204 1.204 19 C 0.019 3.981 20 C -0.240 4.240 21 C -0.225 4.225 22 N -0.071 5.071 23 C -0.080 4.080 24 C -0.032 4.032 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.230 0.770 29 H 0.019 0.981 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.152 0.848 41 H 0.089 0.911 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -21.803 6.454 1.074 22.764 hybrid contribution 1.231 -0.775 -0.649 1.593 sum -20.572 5.679 0.426 21.346 Atomic orbital electron populations 1.22177 0.90395 1.06446 1.05407 1.22093 0.92765 0.85492 0.68729 1.90512 1.73403 1.35312 1.40960 1.20602 0.93678 0.95160 1.22400 1.24356 0.98338 0.95939 0.94620 1.19646 0.86162 0.92167 1.24164 1.17493 0.84214 0.85805 0.76617 1.90691 1.87809 1.15948 1.53412 1.48012 1.06770 1.06759 1.69971 1.18821 0.78374 0.92224 0.96125 1.21610 1.02603 1.40648 0.93072 0.93248 1.25802 0.97248 0.94698 1.01041 1.70030 1.14491 1.41883 1.30238 0.85502 0.77421 0.78857 0.79239 1.18696 1.20035 1.20413 1.21481 1.01469 0.79265 0.95895 1.23132 1.01136 1.02672 0.97028 1.22833 1.00486 1.02135 0.97060 1.43904 1.04660 1.08405 1.50160 1.22482 1.05694 0.75153 1.04652 1.23420 0.95218 0.86607 0.97947 0.87498 0.88108 0.88200 0.76983 0.98068 0.95465 0.92316 0.88816 0.90382 0.88197 0.93314 0.91936 0.88646 0.91774 0.90012 0.84771 0.91149 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 10.28 71.24 0.73 -1.10 16 2 C 0.43 8.93 7.24 27.88 0.20 9.13 16 3 O -0.52 -15.12 17.67 -3.14 -0.06 -15.18 16 4 C -0.31 -7.20 6.12 -20.18 -0.12 -7.33 16 5 C -0.11 -3.30 4.42 22.63 0.10 -3.20 16 6 C -0.11 -3.90 5.26 39.99 0.21 -3.69 16 7 C 0.57 25.95 6.89 86.50 0.60 26.54 16 8 O -0.59 -31.52 14.32 -4.27 -0.06 -31.58 16 9 N -0.59 -27.03 2.41 -806.61 -1.94 -28.97 16 10 C 0.27 14.85 5.07 85.63 0.43 15.29 16 11 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 12 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.93 -56.66 13.28 21.45 0.28 -56.38 16 15 Si 0.97 45.87 29.54 68.60 2.03 47.89 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 19 C 0.12 4.44 3.26 44.99 0.15 4.58 16 20 C -0.18 -5.98 7.91 71.98 0.57 -5.41 16 21 C -0.17 -5.04 8.03 71.98 0.58 -4.46 16 22 N -0.40 -10.35 3.12 -533.72 -1.67 -12.02 16 23 C 0.06 1.32 10.44 127.77 1.33 2.65 16 24 C 0.11 1.95 10.74 84.43 0.91 2.85 16 25 H 0.11 0.35 6.44 -2.39 -0.02 0.33 16 26 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.21 6.38 0.69 -68.53 -0.05 6.34 16 29 H 0.00 0.08 7.52 -2.39 -0.02 0.06 16 30 H 0.03 1.54 7.97 -2.39 -0.02 1.52 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.09 3.44 7.84 -2.39 -0.02 3.42 16 33 H 0.08 2.74 3.94 -13.78 -0.05 2.69 16 34 H 0.10 2.70 6.98 -2.39 -0.02 2.68 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 2.46 6.55 -2.39 -0.02 2.45 16 38 H 0.06 2.09 5.02 -2.39 -0.01 2.08 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.13 1.46 8.11 -2.39 -0.02 1.44 16 41 H 0.07 2.14 6.44 -2.39 -0.02 2.13 16 42 H 0.24 1.08 7.03 -2.91 -0.02 1.06 16 Total: -1.00 -82.10 333.50 5.93 -76.16 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.96 Total: 14.97 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.39 Total: 5.09 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -3.32 Total: -97.36 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.12 Total: -46.75 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.89 kcal Total: -82.10 5.93 -76.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523376541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.053 kcal (2) G-P(sol) polarization free energy of solvation -82.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds