Wall clock time and date at job start Tue Mar 31 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47400 * 2 1 4 4 H 1.09001 * 109.47003 * 306.50565 * 3 2 1 5 5 C 1.52999 * 109.47330 * 66.50076 * 3 2 1 6 6 C 1.52997 * 109.47243 * 186.50142 * 3 2 1 7 7 H 1.09007 * 109.46927 * 185.69413 * 6 3 2 8 8 O 1.42894 * 109.47394 * 305.69666 * 6 3 2 9 9 C 1.42894 * 114.00151 * 264.37373 * 8 6 3 10 10 C 1.50703 * 109.46926 * 65.69758 * 6 3 2 11 11 O 1.21273 * 120.00284 * 244.08108 * 10 6 3 12 12 N 1.34782 * 119.99731 * 64.08641 * 10 6 3 13 13 C 1.39474 * 119.99482 * 185.85461 * 12 10 6 14 14 C 1.38599 * 119.58300 * 17.97883 * 13 12 10 15 15 C 1.40804 * 118.79202 * 179.75985 * 14 13 12 16 16 C 1.41555 * 120.99375 * 180.26445 * 15 14 13 17 17 H 1.07996 * 119.99827 * 211.80427 * 16 15 14 18 18 C 1.40028 * 119.99915 * 31.80332 * 16 15 14 19 19 N 1.30747 * 119.99914 * 7.07427 * 18 16 15 20 20 Si 1.86798 * 120.00002 * 187.07394 * 18 16 15 21 21 H 1.48498 * 109.47303 * 60.00171 * 20 18 16 22 22 H 1.48503 * 109.47119 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46961 * 299.99935 * 20 18 16 24 24 C 1.41176 * 118.01185 * 0.50772 * 15 14 13 25 25 C 1.37583 * 119.01191 * 359.75670 * 24 15 14 26 26 N 1.32081 * 121.11156 * 359.97438 * 25 24 15 27 27 H 1.09000 * 109.47398 * 300.00197 * 1 2 3 28 28 H 1.09006 * 109.46951 * 60.00294 * 1 2 3 29 29 H 1.09005 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47000 * 239.99451 * 2 1 3 31 31 H 1.09002 * 109.46588 * 120.00357 * 2 1 3 32 32 H 1.08992 * 109.47399 * 173.91701 * 5 3 2 33 33 H 1.09001 * 109.46823 * 53.91184 * 5 3 2 34 34 H 1.09005 * 109.47191 * 293.91475 * 5 3 2 35 35 H 1.09004 * 109.47180 * 305.40019 * 9 8 6 36 36 H 1.09004 * 109.47066 * 65.39808 * 9 8 6 37 37 H 1.09007 * 109.47248 * 185.39723 * 9 8 6 38 38 H 0.96996 * 120.00493 * 5.84422 * 12 10 6 39 39 H 1.08001 * 120.59806 * 0.03132 * 14 13 12 40 40 H 0.97001 * 119.99785 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.49320 * 179.77714 * 24 15 14 42 42 H 1.07999 * 119.44138 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5848 1.9888 -0.8260 5 6 1.6678 2.1150 1.3228 6 6 3.5613 1.4455 -0.1633 7 1 3.9355 2.4643 -0.0622 8 8 4.1501 0.6196 0.8432 9 6 4.5890 1.3357 1.9992 10 6 3.9212 0.9110 -1.5256 11 8 4.5512 -0.1205 -1.6254 12 7 3.5432 1.5795 -2.6332 13 6 3.7683 1.0252 -3.8931 14 6 4.0242 -0.3321 -4.0077 15 6 4.2441 -0.8751 -5.2881 16 6 4.5040 -2.2560 -5.4595 17 1 5.1435 -2.5894 -6.2634 18 6 3.9318 -3.1897 -4.5868 19 7 3.0506 -2.8028 -3.7018 20 14 4.4276 -4.9879 -4.6870 21 1 5.8866 -5.1136 -4.4405 22 1 3.6834 -5.7643 -3.6629 23 1 4.1065 -5.5154 -6.0375 24 6 4.2029 -0.0002 -6.3953 25 6 3.9469 1.3346 -6.1818 26 7 3.7404 1.8038 -4.9645 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.1228 3.1044 1.3680 33 1 2.0314 1.5096 2.1532 34 1 0.5840 2.2102 1.3898 35 1 5.2660 2.1346 1.6964 36 1 3.7268 1.7643 2.5102 37 1 5.1091 0.6546 2.6729 38 1 3.1144 2.4459 -2.5542 39 1 4.0501 -0.9626 -3.1312 40 1 2.6540 -3.4497 -3.0975 41 1 4.3695 -0.3732 -7.3950 42 1 3.9133 2.0101 -7.0239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526008391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:41 Heat of formation + Delta-G solvation = -53.763305 kcal Electronic energy + Delta-G solvation = -24300.790637 eV Core-core repulsion = 20859.877414 eV Total energy + Delta-G solvation = -3440.913223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.21963 -38.53477 -37.20887 -35.35007 -34.32139 -33.49736 -30.52986 -30.25838 -29.05301 -27.86203 -25.86453 -25.57814 -23.76994 -22.20033 -21.30483 -20.41245 -19.48689 -18.02521 -16.93664 -16.52840 -16.00413 -15.55066 -15.10101 -15.00220 -14.49462 -14.21302 -14.18282 -13.88187 -13.54359 -13.06406 -12.91189 -12.67439 -12.46341 -12.40419 -12.17153 -12.09870 -11.83763 -11.33463 -11.29467 -11.13760 -11.08025 -10.86152 -10.50170 -10.43729 -10.34976 -10.13729 -9.69861 -9.62014 -9.25147 -8.65449 -8.07472 -7.81248 -6.97435 -6.64968 -4.49179 2.54900 2.91747 3.11907 3.14447 3.16560 3.20339 3.42519 3.98665 4.12111 4.65883 4.75854 4.81015 4.90870 5.11823 5.18194 5.29514 5.35234 5.52631 5.54203 5.59475 5.62324 5.69810 5.71897 5.89819 5.92740 6.00059 6.06649 6.30392 6.46017 6.55244 6.63280 6.77092 6.82111 7.05764 7.12196 7.24137 7.43783 7.64267 7.91029 7.98974 8.38245 8.53739 8.81276 8.86323 8.94379 9.55195 10.26768 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.005602 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.698578 B = 4996.756128 C = 5871.531591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.106 4.106 4 H 0.083 0.917 5 C -0.150 4.150 6 C 0.082 3.918 7 H 0.083 0.917 8 O -0.349 6.349 9 C 0.022 3.978 10 C 0.505 3.495 11 O -0.480 6.480 12 N -0.649 5.649 13 C 0.316 3.684 14 C -0.207 4.207 15 C 0.135 3.865 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.076 3.924 19 N -0.785 5.785 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.283 4.283 25 C 0.117 3.883 26 N -0.599 5.599 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.399 0.601 39 H 0.170 0.830 40 H 0.282 0.718 41 H 0.102 0.898 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 7.639 11.009 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.125 4.125 4 H 0.101 0.899 5 C -0.207 4.207 6 C 0.020 3.980 7 H 0.101 0.899 8 O -0.266 6.266 9 C -0.075 4.075 10 C 0.289 3.711 11 O -0.351 6.351 12 N -0.296 5.296 13 C 0.095 3.905 14 C -0.231 4.231 15 C 0.127 3.873 16 C -0.489 4.489 17 H 0.098 0.902 18 C -0.143 4.143 19 N -0.411 5.411 20 Si 0.739 3.261 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.191 1.191 24 C -0.307 4.307 25 C -0.038 4.038 26 N -0.319 5.319 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.233 0.767 39 H 0.187 0.813 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.273 7.473 11.320 13.954 hybrid contribution 0.058 -0.842 -0.146 0.857 sum -3.215 6.631 11.174 13.385 Atomic orbital electron populations 1.21785 0.96049 1.01619 1.01151 1.21470 0.95323 0.94912 1.03722 1.21642 0.93098 0.98613 0.99142 0.89904 1.22004 1.01881 0.99777 0.97016 1.22012 0.94012 0.94537 0.87443 0.89906 1.88063 1.79082 1.32536 1.26957 1.23048 0.98619 0.97479 0.88342 1.20265 0.80390 0.85355 0.85074 1.90716 1.36292 1.22271 1.85819 1.43025 1.59880 1.22476 1.04172 1.18101 0.99253 0.89610 0.83552 1.22813 1.07483 0.92059 1.00734 1.17810 0.86197 0.93215 0.90082 1.19496 1.26645 0.90455 1.12276 0.90200 1.25913 0.93288 1.01675 0.93452 1.69706 1.19726 1.36920 1.14721 0.86272 0.79902 0.81173 0.78773 1.18804 1.20254 1.19057 1.21922 1.15140 0.95044 0.98561 1.21499 0.96954 0.93342 0.92016 1.66564 1.27375 1.39388 0.98616 0.93117 0.92898 0.92765 0.90809 0.91259 0.92865 0.91872 0.91932 0.94077 0.93384 0.89501 0.76718 0.81327 0.90739 0.87982 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.70 37.16 0.36 -1.51 16 2 C -0.12 -1.73 4.99 -26.73 -0.13 -1.86 16 3 C -0.11 -1.33 2.18 -90.62 -0.20 -1.53 16 4 H 0.08 1.00 7.84 -51.93 -0.41 0.60 16 5 C -0.15 -1.41 7.71 37.16 0.29 -1.12 16 6 C 0.08 1.19 2.39 -27.88 -0.07 1.13 16 7 H 0.08 0.96 7.65 -51.93 -0.40 0.56 16 8 O -0.35 -5.40 8.98 -55.11 -0.50 -5.89 16 9 C 0.02 0.23 10.49 101.05 1.06 1.29 16 10 C 0.50 10.05 5.95 -10.98 -0.07 9.99 16 11 O -0.48 -11.97 13.29 -14.31 -0.19 -12.16 16 12 N -0.65 -12.96 5.27 -11.49 -0.06 -13.02 16 13 C 0.32 7.84 7.52 -154.70 -1.16 6.68 16 14 C -0.21 -5.74 7.45 -38.48 -0.29 -6.03 16 15 C 0.14 3.78 5.55 -106.55 -0.59 3.19 16 16 C -0.46 -12.56 9.12 -37.65 -0.34 -12.91 16 17 H 0.08 2.08 7.86 -52.49 -0.41 1.66 16 18 C 0.08 1.99 5.33 -17.34 -0.09 1.90 16 19 N -0.79 -21.28 10.94 55.55 0.61 -20.67 16 20 Si 0.91 19.59 29.57 -169.99 -5.03 14.56 16 21 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.28 -7.08 9.90 -38.71 -0.38 -7.46 16 25 C 0.12 2.71 11.15 -17.68 -0.20 2.52 16 26 N -0.60 -14.45 10.36 -12.52 -0.13 -14.58 16 27 H 0.05 0.53 6.75 -51.93 -0.35 0.18 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.41 7.21 -51.93 -0.37 1.03 16 31 H 0.07 1.03 7.76 -51.93 -0.40 0.63 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.59 6.17 -51.93 -0.32 0.27 16 34 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 35 H 0.04 0.39 7.97 -51.93 -0.41 -0.03 16 36 H 0.05 0.41 5.42 -51.93 -0.28 0.13 16 37 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.40 6.46 8.66 -40.82 -0.35 6.10 16 39 H 0.17 4.95 3.68 -52.54 -0.19 4.76 16 40 H 0.28 7.05 8.29 -40.82 -0.34 6.71 16 41 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 339.98 15.07 5.12 5.12 Total: -1.00 -32.59 339.98 -7.92 -40.51 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -5.94 Total: 11.86 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -1.81 Total: -5.74 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.42 Total: -48.27 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.69 Total: -18.05 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.59 -7.92 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526008391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.252 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds