Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47400 * 2 1 4 4 H 1.09001 * 109.47003 * 306.50565 * 3 2 1 5 5 C 1.52999 * 109.47330 * 66.50076 * 3 2 1 6 6 C 1.52997 * 109.47243 * 186.50142 * 3 2 1 7 7 H 1.09007 * 109.46927 * 185.69413 * 6 3 2 8 8 O 1.42894 * 109.47394 * 305.69666 * 6 3 2 9 9 C 1.42894 * 114.00151 * 264.37373 * 8 6 3 10 10 C 1.50703 * 109.46926 * 65.69758 * 6 3 2 11 11 O 1.21273 * 120.00284 * 244.08108 * 10 6 3 12 12 N 1.34782 * 119.99731 * 64.08641 * 10 6 3 13 13 C 1.39474 * 119.99482 * 185.85461 * 12 10 6 14 14 C 1.38599 * 119.58300 * 17.97883 * 13 12 10 15 15 C 1.40804 * 118.79202 * 179.75985 * 14 13 12 16 16 C 1.41555 * 120.99375 * 180.26445 * 15 14 13 17 17 H 1.07996 * 119.99827 * 211.80427 * 16 15 14 18 18 C 1.40028 * 119.99915 * 31.80332 * 16 15 14 19 19 N 1.30747 * 119.99914 * 7.07427 * 18 16 15 20 20 Si 1.86798 * 120.00002 * 187.07394 * 18 16 15 21 21 H 1.48498 * 109.47303 * 60.00171 * 20 18 16 22 22 H 1.48503 * 109.47119 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46961 * 299.99935 * 20 18 16 24 24 C 1.41176 * 118.01185 * 0.50772 * 15 14 13 25 25 C 1.37583 * 119.01191 * 359.75670 * 24 15 14 26 26 N 1.32081 * 121.11156 * 359.97438 * 25 24 15 27 27 H 1.09000 * 109.47398 * 300.00197 * 1 2 3 28 28 H 1.09006 * 109.46951 * 60.00294 * 1 2 3 29 29 H 1.09005 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47000 * 239.99451 * 2 1 3 31 31 H 1.09002 * 109.46588 * 120.00357 * 2 1 3 32 32 H 1.08992 * 109.47399 * 173.91701 * 5 3 2 33 33 H 1.09001 * 109.46823 * 53.91184 * 5 3 2 34 34 H 1.09005 * 109.47191 * 293.91475 * 5 3 2 35 35 H 1.09004 * 109.47180 * 305.40019 * 9 8 6 36 36 H 1.09004 * 109.47066 * 65.39808 * 9 8 6 37 37 H 1.09007 * 109.47248 * 185.39723 * 9 8 6 38 38 H 0.96996 * 120.00493 * 5.84422 * 12 10 6 39 39 H 1.08001 * 120.59806 * 0.03132 * 14 13 12 40 40 H 0.97001 * 119.99785 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.49320 * 179.77714 * 24 15 14 42 42 H 1.07999 * 119.44138 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5848 1.9888 -0.8260 5 6 1.6678 2.1150 1.3228 6 6 3.5613 1.4455 -0.1633 7 1 3.9355 2.4643 -0.0622 8 8 4.1501 0.6196 0.8432 9 6 4.5890 1.3357 1.9992 10 6 3.9212 0.9110 -1.5256 11 8 4.5512 -0.1205 -1.6254 12 7 3.5432 1.5795 -2.6332 13 6 3.7683 1.0252 -3.8931 14 6 4.0242 -0.3321 -4.0077 15 6 4.2441 -0.8751 -5.2881 16 6 4.5040 -2.2560 -5.4595 17 1 5.1435 -2.5894 -6.2634 18 6 3.9318 -3.1897 -4.5868 19 7 3.0506 -2.8028 -3.7018 20 14 4.4276 -4.9879 -4.6870 21 1 5.8866 -5.1136 -4.4405 22 1 3.6834 -5.7643 -3.6629 23 1 4.1065 -5.5154 -6.0375 24 6 4.2029 -0.0002 -6.3953 25 6 3.9469 1.3346 -6.1818 26 7 3.7404 1.8038 -4.9645 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 2.1228 3.1044 1.3680 33 1 2.0314 1.5096 2.1532 34 1 0.5840 2.2102 1.3898 35 1 5.2660 2.1346 1.6964 36 1 3.7268 1.7643 2.5102 37 1 5.1091 0.6546 2.6729 38 1 3.1144 2.4459 -2.5542 39 1 4.0501 -0.9626 -3.1312 40 1 2.6540 -3.4497 -3.0975 41 1 4.3695 -0.3732 -7.3950 42 1 3.9133 2.0101 -7.0239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526008391.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -74.804231 kcal Electronic energy + Delta-G solvation = -24301.703040 eV Core-core repulsion = 20859.877414 eV Total energy + Delta-G solvation = -3441.825626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76090 -40.10905 -38.76584 -36.49700 -36.15244 -35.32001 -32.48973 -31.55972 -30.41388 -29.10955 -27.86027 -26.60466 -24.90036 -24.01563 -23.11408 -21.83810 -20.82619 -19.87509 -18.43368 -17.97024 -17.39408 -17.15102 -16.70992 -16.46716 -16.06170 -15.81864 -15.58945 -15.23888 -14.97531 -14.63474 -14.36087 -14.28328 -13.94771 -13.71477 -13.37449 -13.18038 -12.95265 -12.92628 -12.78462 -12.68817 -12.31471 -12.26180 -12.08754 -11.97279 -11.63477 -11.47027 -11.45099 -11.16263 -10.79090 -10.24663 -10.03954 -9.81815 -8.87012 -8.61144 -6.57042 0.68888 1.00052 1.33679 1.46461 1.46966 1.69991 1.78553 2.17733 2.80486 2.97645 3.53612 3.63524 3.69611 3.82801 4.06037 4.15431 4.19574 4.46926 4.49738 4.58661 4.63284 4.64780 4.74684 4.78189 4.85614 4.86923 4.89756 5.05496 5.06356 5.14413 5.17999 5.25149 5.28000 5.44720 5.48740 5.50440 5.67745 5.98254 6.07043 6.24989 6.48214 6.55296 6.81882 6.89176 7.25014 7.61285 8.31155 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.005602 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.698578 B = 4996.756128 C = 5871.531591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.089 0.911 5 C -0.143 4.143 6 C 0.093 3.907 7 H 0.123 0.877 8 O -0.385 6.385 9 C 0.014 3.986 10 C 0.499 3.501 11 O -0.537 6.537 12 N -0.639 5.639 13 C 0.317 3.683 14 C -0.245 4.245 15 C 0.103 3.897 16 C -0.493 4.493 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.818 5.818 20 Si 0.987 3.013 21 H -0.262 1.262 22 H -0.270 1.270 23 H -0.250 1.250 24 C -0.296 4.296 25 C 0.119 3.881 26 N -0.595 5.595 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.419 0.581 39 H 0.149 0.851 40 H 0.284 0.716 41 H 0.119 0.881 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 9.494 12.122 15.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.120 4.120 4 H 0.107 0.893 5 C -0.200 4.200 6 C 0.031 3.969 7 H 0.141 0.859 8 O -0.303 6.303 9 C -0.082 4.082 10 C 0.286 3.714 11 O -0.412 6.412 12 N -0.287 5.287 13 C 0.094 3.906 14 C -0.270 4.270 15 C 0.094 3.906 16 C -0.524 4.524 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.444 5.444 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.174 1.174 24 C -0.320 4.320 25 C -0.035 4.035 26 N -0.315 5.315 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.166 0.834 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.989 9.385 12.443 16.088 hybrid contribution 0.290 -1.322 -0.474 1.434 sum -3.698 8.063 11.969 14.898 Atomic orbital electron populations 1.21752 0.94211 1.01617 1.02463 1.21397 0.96920 0.96254 1.00625 1.21659 0.91331 0.97206 1.01761 0.89274 1.21976 1.03049 1.00577 0.94376 1.22058 0.95391 0.95522 0.83907 0.85924 1.88034 1.79484 1.34465 1.28335 1.23321 1.00062 0.97853 0.86948 1.21504 0.78651 0.84337 0.86881 1.90687 1.38885 1.24822 1.86787 1.42994 1.59648 1.23212 1.02799 1.18328 0.97702 0.89155 0.85456 1.22792 1.10288 0.93542 1.00329 1.18272 0.86863 0.94269 0.91184 1.19825 1.27875 0.91175 1.13519 0.89775 1.26872 0.92751 1.06357 0.92593 1.69820 1.20692 1.38442 1.15397 0.85182 0.79345 0.75190 0.79563 1.18693 1.19396 1.17406 1.22166 1.15512 0.95725 0.98606 1.22207 0.94791 0.93475 0.93025 1.66796 1.27200 1.38761 0.98768 0.89994 0.93206 0.93572 0.96437 0.91845 0.90289 0.91720 0.90523 0.92776 0.90741 0.88938 0.74374 0.83353 0.90549 0.86343 0.81303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.70 71.98 0.70 -2.81 16 2 C -0.11 -3.44 4.99 30.59 0.15 -3.29 16 3 C -0.10 -2.35 2.18 -10.80 -0.02 -2.37 16 4 H 0.09 1.97 7.84 -2.39 -0.02 1.95 16 5 C -0.14 -2.10 7.71 71.98 0.56 -1.55 16 6 C 0.09 2.58 2.39 29.85 0.07 2.65 16 7 H 0.12 2.42 7.65 -2.38 -0.02 2.40 16 8 O -0.39 -11.67 8.98 -129.98 -1.17 -12.84 16 9 C 0.01 0.25 10.49 113.37 1.19 1.44 16 10 C 0.50 20.38 5.95 87.66 0.52 20.90 16 11 O -0.54 -28.45 13.29 16.00 0.21 -28.24 16 12 N -0.64 -25.69 5.27 -308.65 -1.63 -27.32 16 13 C 0.32 16.05 7.52 132.75 1.00 17.05 16 14 C -0.25 -14.30 7.45 22.98 0.17 -14.13 16 15 C 0.10 5.96 5.55 -21.11 -0.12 5.84 16 16 C -0.49 -28.25 9.12 23.52 0.21 -28.04 16 17 H 0.08 4.54 7.86 -2.91 -0.02 4.52 16 18 C 0.03 1.63 5.33 85.29 0.45 2.08 16 19 N -0.82 -46.84 10.94 21.84 0.24 -46.60 16 20 Si 0.99 41.32 29.57 68.60 2.03 43.35 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 24 C -0.30 -14.99 9.90 22.84 0.23 -14.76 16 25 C 0.12 5.43 11.15 84.50 0.94 6.37 16 26 N -0.59 -28.30 10.36 -193.53 -2.01 -30.30 16 27 H 0.08 1.49 6.75 -2.39 -0.02 1.48 16 28 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.02 0.70 7.21 -2.39 -0.02 0.68 16 31 H 0.06 1.93 7.76 -2.39 -0.02 1.92 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.96 6.17 -2.39 -0.01 0.95 16 34 H 0.08 0.96 6.91 -2.38 -0.02 0.95 16 35 H 0.05 0.86 7.97 -2.38 -0.02 0.85 16 36 H 0.07 0.99 5.42 -2.38 -0.01 0.97 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.42 13.06 8.66 -92.71 -0.80 12.25 16 39 H 0.15 9.35 3.68 -3.79 -0.01 9.33 16 40 H 0.28 15.07 8.29 -92.71 -0.77 14.30 16 41 H 0.12 5.43 8.06 -2.91 -0.02 5.40 16 42 H 0.17 6.04 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -77.10 339.98 3.97 -73.13 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.24 Total: 39.42 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 6.05 Total: -10.62 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -3.39 Total: -104.22 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.96 Total: -41.07 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -77.10 3.97 -73.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526008391.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.671 kcal (2) G-P(sol) polarization free energy of solvation -77.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds