Wall clock time and date at job start Tue Mar 31 2020 07:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47157 * 2 1 4 4 N 1.46500 * 109.47641 * 180.02562 * 3 2 1 5 5 C 1.36857 * 120.00084 * 270.31240 * 4 3 2 6 6 H 1.07993 * 120.00153 * 185.43901 * 5 4 3 7 7 C 1.39030 * 119.99706 * 5.15424 * 5 4 3 8 8 N 1.31384 * 120.00137 * 24.74212 * 7 5 4 9 9 Si 1.86800 * 120.00017 * 204.74150 * 7 5 4 10 10 H 1.48505 * 109.46816 * 60.00143 * 9 7 5 11 11 H 1.48495 * 109.47368 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47156 * 300.00523 * 9 7 5 13 13 C 1.34773 * 119.99782 * 90.30225 * 4 3 2 14 14 O 1.21731 * 119.99923 * 172.97337 * 13 4 3 15 15 C 1.46584 * 120.00315 * 352.97264 * 13 4 3 16 16 O 1.35350 * 126.65506 * 354.95536 * 15 13 4 17 17 C 1.33699 * 107.68489 * 179.97438 * 16 15 13 18 18 C 1.50695 * 125.41469 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46949 * 270.00224 * 18 17 16 20 20 C 1.53004 * 117.49760 * 243.74340 * 19 18 17 21 21 C 1.53010 * 117.49469 * 175.08891 * 19 18 17 22 22 N 1.30632 * 109.16970 * 359.97438 * 17 16 15 23 23 C 1.33668 * 109.00670 * 359.73085 * 22 17 16 24 24 C 1.50700 * 126.27841 * 180.27339 * 23 22 17 25 25 H 1.09003 * 109.46922 * 299.99789 * 1 2 3 26 26 H 1.08996 * 109.47021 * 59.99807 * 1 2 3 27 27 H 1.08996 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47178 * 239.99989 * 2 1 3 29 29 H 1.08998 * 109.47426 * 119.99336 * 2 1 3 30 30 H 1.09001 * 109.47423 * 59.99622 * 3 2 1 31 31 H 1.09004 * 109.46738 * 300.00250 * 3 2 1 32 32 H 0.96998 * 120.00491 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46869 * 30.00132 * 18 17 16 34 34 H 1.08995 * 109.47429 * 149.99811 * 18 17 16 35 35 H 1.08991 * 115.55440 * 29.41918 * 19 18 17 36 36 H 1.08998 * 117.49756 * 0.02562 * 20 19 18 37 37 H 1.09000 * 117.49655 * 145.01917 * 20 19 18 38 38 H 1.09004 * 117.49178 * 214.97496 * 21 19 18 39 39 H 1.08993 * 117.50032 * 359.97407 * 21 19 18 40 40 H 1.09003 * 109.47420 * 270.18895 * 24 23 22 41 41 H 1.09000 * 109.47140 * 30.18144 * 24 23 22 42 42 H 1.08997 * 109.47835 * 150.18360 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1899 1.4361 1.1843 6 1 5.2661 1.5248 1.1864 7 6 3.4994 1.3211 2.3855 8 7 2.3169 0.7490 2.4114 9 14 4.2529 1.9800 3.9627 10 1 4.4926 3.4391 3.8249 11 1 3.3240 1.7353 5.0951 12 1 5.5416 1.2890 4.2220 13 6 4.1784 1.4490 -1.1681 14 8 5.3888 1.5781 -1.1719 15 6 3.4532 1.3005 -2.4333 16 8 2.1306 1.0547 -2.5826 17 6 1.8744 0.9928 -3.8933 18 6 0.5226 0.7358 -4.5077 19 6 0.3276 -0.7695 -4.6999 20 6 0.1835 -1.2859 -6.1329 21 6 -1.0349 -1.2462 -5.2072 22 7 2.9822 1.1905 -4.5567 23 6 3.9793 1.3906 -3.6893 24 6 5.4209 1.6617 -4.0348 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.8353 0.6685 3.2496 33 1 -0.2552 1.1217 -3.8488 34 1 0.4615 1.2364 -5.4739 35 1 0.8495 -1.4062 -3.9856 36 1 0.2281 -0.5533 -6.9387 37 1 0.6105 -2.2625 -6.3613 38 1 -1.4090 -2.1968 -4.8269 39 1 -1.7924 -0.4876 -5.4036 40 1 5.9603 0.7175 -4.1098 41 1 5.4734 2.1867 -4.9886 42 1 5.8718 2.2768 -3.2562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530402183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:13 Heat of formation + Delta-G solvation = 16.365380 kcal Electronic energy + Delta-G solvation = -24435.291385 eV Core-core repulsion = 20997.419169 eV Total energy + Delta-G solvation = -3437.872215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77720 -38.49081 -37.60049 -35.72160 -34.44538 -32.43407 -31.81660 -31.50013 -28.90799 -27.21426 -25.79632 -24.39657 -22.49887 -21.96680 -21.21942 -20.77257 -20.39658 -19.49848 -17.19559 -16.62772 -16.24393 -16.10248 -15.22220 -14.79274 -14.37394 -14.26116 -13.81460 -13.63288 -13.38867 -13.20055 -12.83846 -12.71131 -12.33120 -12.29660 -11.95116 -11.73519 -11.63895 -11.58251 -11.40757 -11.04100 -10.92767 -10.56594 -10.50752 -10.43345 -10.35826 -10.32294 -10.10424 -10.04896 -9.63800 -8.98238 -8.69810 -8.13267 -7.90562 -6.54808 -3.92447 1.56710 2.92948 3.08407 3.12727 3.15602 3.21486 3.71516 3.96140 4.09268 4.24590 4.66199 4.72874 4.83427 4.90188 4.95377 5.19688 5.37072 5.49694 5.51508 5.58212 5.64102 5.77984 5.91247 6.00214 6.03843 6.09256 6.13988 6.16544 6.25378 6.32041 6.37393 6.44284 6.56529 6.73731 6.81924 6.88184 6.92676 7.22808 7.34608 7.72931 7.86523 8.18902 8.34963 8.95734 9.18755 9.76861 10.38169 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.005321 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.520749 B = 5260.602261 C = 6571.845026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 C 0.125 3.875 4 N -0.411 5.411 5 C -0.303 4.303 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.844 5.844 9 Si 0.927 3.073 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.497 3.503 14 O -0.575 6.575 15 C -0.053 4.053 16 O -0.176 6.176 17 C 0.170 3.830 18 C 0.014 3.986 19 C -0.149 4.149 20 C -0.174 4.174 21 C -0.175 4.175 22 N -0.480 5.480 23 C 0.022 3.978 24 C -0.064 4.064 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.028 0.972 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.273 0.727 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 -1.560 -9.325 12.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.002 3.998 4 N -0.125 5.125 5 C -0.430 4.430 6 H 0.130 0.870 7 C -0.172 4.172 8 N -0.481 5.481 9 Si 0.752 3.248 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.286 3.714 14 O -0.462 6.462 15 C -0.109 4.109 16 O -0.062 6.062 17 C -0.036 4.036 18 C -0.024 4.024 19 C -0.168 4.168 20 C -0.211 4.211 21 C -0.212 4.212 22 N -0.210 5.210 23 C -0.103 4.103 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.761 -1.547 -9.718 12.533 hybrid contribution -0.009 0.105 1.464 1.468 sum -7.771 -1.442 -8.254 11.428 Atomic orbital electron populations 1.21546 0.97330 0.99866 1.00282 1.21903 0.93990 0.97552 1.02244 1.21713 0.79643 0.97916 1.00550 1.43839 1.06124 1.57795 1.04723 1.19831 0.94035 1.47647 0.81503 0.87041 1.25367 0.96209 0.95791 0.99808 1.70146 1.14236 1.35781 1.27962 0.85985 0.79041 0.79997 0.79766 1.19660 1.20763 1.19528 1.16077 0.86119 0.88662 0.80586 1.90662 1.12109 1.58702 1.84764 1.23716 0.80157 1.08658 0.98392 1.84789 1.26206 1.67581 1.27587 1.25936 0.97270 1.01821 0.78547 1.19530 0.87198 0.95020 1.00690 1.22165 1.01048 0.95164 0.98456 1.23058 1.01899 1.02936 0.93224 1.23004 0.91116 1.03071 1.04044 1.70102 0.98141 1.18092 1.34711 1.21755 0.97190 1.03756 0.87588 1.20137 0.87543 1.02395 1.02044 0.92968 0.94548 0.94198 0.95322 0.87520 0.88516 0.93835 0.91672 0.88711 0.88070 0.87445 0.88482 0.88852 0.88627 0.88541 0.91249 0.91868 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.12 -2.52 5.20 -26.73 -0.14 -2.66 16 3 C 0.12 2.84 4.16 -4.04 -0.02 2.82 16 4 N -0.41 -10.54 2.62 -116.33 -0.30 -10.84 16 5 C -0.30 -8.06 9.46 -15.01 -0.14 -8.21 16 6 H 0.11 3.11 7.28 -52.49 -0.38 2.72 16 7 C 0.03 0.83 4.96 -17.45 -0.09 0.74 16 8 N -0.84 -20.18 8.07 55.50 0.45 -19.74 16 9 Si 0.93 19.35 29.62 -169.99 -5.03 14.32 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.50 12.75 7.57 -12.90 -0.10 12.65 16 14 O -0.57 -15.82 14.46 5.16 0.07 -15.74 16 15 C -0.05 -1.20 6.67 -36.86 -0.25 -1.45 16 16 O -0.18 -3.54 6.15 4.31 0.03 -3.52 16 17 C 0.17 2.97 7.53 -12.79 -0.10 2.88 16 18 C 0.01 0.17 6.12 -27.88 -0.17 0.00 16 19 C -0.15 -1.74 5.72 -90.61 -0.52 -2.26 16 20 C -0.17 -1.71 10.18 -26.69 -0.27 -1.98 16 21 C -0.18 -1.58 10.25 -26.69 -0.27 -1.86 16 22 N -0.48 -9.22 11.26 -7.04 -0.08 -9.30 16 23 C 0.02 0.45 7.16 -82.43 -0.59 -0.14 16 24 C -0.06 -1.17 9.82 36.01 0.35 -0.82 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.62 6.90 -51.93 -0.36 0.27 16 29 H 0.11 2.55 5.91 -51.93 -0.31 2.25 16 30 H 0.10 2.30 6.06 -51.93 -0.31 1.99 16 31 H 0.04 0.95 5.64 -51.93 -0.29 0.66 16 32 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 35 H 0.11 1.45 8.07 -51.93 -0.42 1.03 16 36 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.80 6.60 -51.93 -0.34 1.46 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -28.70 342.17 -7.82 -36.52 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.18 Total: 5.34 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.93 Total: -2.20 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.06 Total: -39.88 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.10 Total: -19.26 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.70 -7.82 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530402183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.889 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds