Wall clock time and date at job start Tue Mar 31 2020 07:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47157 * 2 1 4 4 N 1.46500 * 109.47641 * 180.02562 * 3 2 1 5 5 C 1.36857 * 120.00084 * 270.31240 * 4 3 2 6 6 H 1.07993 * 120.00153 * 185.43901 * 5 4 3 7 7 C 1.39030 * 119.99706 * 5.15424 * 5 4 3 8 8 N 1.31384 * 120.00137 * 24.74212 * 7 5 4 9 9 Si 1.86800 * 120.00017 * 204.74150 * 7 5 4 10 10 H 1.48505 * 109.46816 * 60.00143 * 9 7 5 11 11 H 1.48495 * 109.47368 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47156 * 300.00523 * 9 7 5 13 13 C 1.34773 * 119.99782 * 90.30225 * 4 3 2 14 14 O 1.21731 * 119.99923 * 172.97337 * 13 4 3 15 15 C 1.46584 * 120.00315 * 352.97264 * 13 4 3 16 16 O 1.35350 * 126.65506 * 354.95536 * 15 13 4 17 17 C 1.33699 * 107.68489 * 179.97438 * 16 15 13 18 18 C 1.50695 * 125.41469 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46949 * 270.00224 * 18 17 16 20 20 C 1.53004 * 117.49760 * 243.74340 * 19 18 17 21 21 C 1.53010 * 117.49469 * 175.08891 * 19 18 17 22 22 N 1.30632 * 109.16970 * 359.97438 * 17 16 15 23 23 C 1.33668 * 109.00670 * 359.73085 * 22 17 16 24 24 C 1.50700 * 126.27841 * 180.27339 * 23 22 17 25 25 H 1.09003 * 109.46922 * 299.99789 * 1 2 3 26 26 H 1.08996 * 109.47021 * 59.99807 * 1 2 3 27 27 H 1.08996 * 109.47054 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47178 * 239.99989 * 2 1 3 29 29 H 1.08998 * 109.47426 * 119.99336 * 2 1 3 30 30 H 1.09001 * 109.47423 * 59.99622 * 3 2 1 31 31 H 1.09004 * 109.46738 * 300.00250 * 3 2 1 32 32 H 0.96998 * 120.00491 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.46869 * 30.00132 * 18 17 16 34 34 H 1.08995 * 109.47429 * 149.99811 * 18 17 16 35 35 H 1.08991 * 115.55440 * 29.41918 * 19 18 17 36 36 H 1.08998 * 117.49756 * 0.02562 * 20 19 18 37 37 H 1.09000 * 117.49655 * 145.01917 * 20 19 18 38 38 H 1.09004 * 117.49178 * 214.97496 * 21 19 18 39 39 H 1.08993 * 117.50032 * 359.97407 * 21 19 18 40 40 H 1.09003 * 109.47420 * 270.18895 * 24 23 22 41 41 H 1.09000 * 109.47140 * 30.18144 * 24 23 22 42 42 H 1.08997 * 109.47835 * 150.18360 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1899 1.4361 1.1843 6 1 5.2661 1.5248 1.1864 7 6 3.4994 1.3211 2.3855 8 7 2.3169 0.7490 2.4114 9 14 4.2529 1.9800 3.9627 10 1 4.4926 3.4391 3.8249 11 1 3.3240 1.7353 5.0951 12 1 5.5416 1.2890 4.2220 13 6 4.1784 1.4490 -1.1681 14 8 5.3888 1.5781 -1.1719 15 6 3.4532 1.3005 -2.4333 16 8 2.1306 1.0547 -2.5826 17 6 1.8744 0.9928 -3.8933 18 6 0.5226 0.7358 -4.5077 19 6 0.3276 -0.7695 -4.6999 20 6 0.1835 -1.2859 -6.1329 21 6 -1.0349 -1.2462 -5.2072 22 7 2.9822 1.1905 -4.5567 23 6 3.9793 1.3906 -3.6893 24 6 5.4209 1.6617 -4.0348 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.8353 0.6685 3.2496 33 1 -0.2552 1.1217 -3.8488 34 1 0.4615 1.2364 -5.4739 35 1 0.8495 -1.4062 -3.9856 36 1 0.2281 -0.5533 -6.9387 37 1 0.6105 -2.2625 -6.3613 38 1 -1.4090 -2.1968 -4.8269 39 1 -1.7924 -0.4876 -5.4036 40 1 5.9603 0.7175 -4.1098 41 1 5.4734 2.1867 -4.9886 42 1 5.8718 2.2768 -3.2562 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530402183.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:12 Heat of formation + Delta-G solvation = -0.488515 kcal Electronic energy + Delta-G solvation = -24436.022224 eV Core-core repulsion = 20997.419169 eV Total energy + Delta-G solvation = -3438.603055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.34791 -40.37607 -38.44841 -37.57944 -36.06849 -34.20290 -33.35831 -33.18306 -30.17256 -28.90896 -27.50064 -26.16871 -23.47171 -23.12837 -22.80673 -22.43005 -21.48841 -21.17940 -19.10358 -18.40391 -17.77230 -17.44638 -16.78666 -16.35152 -16.01403 -15.61316 -15.39750 -15.11460 -14.92821 -14.70616 -14.25806 -13.95081 -13.86013 -13.83600 -13.75127 -13.17292 -13.07212 -12.75260 -12.67452 -12.57091 -12.29124 -12.23036 -12.12561 -12.06174 -11.92629 -11.72634 -11.40011 -11.26904 -10.87439 -10.85028 -10.63908 -9.89661 -9.67235 -8.42584 -5.91985 -0.05641 1.33733 1.42554 1.48607 1.51966 1.60607 2.20494 2.24808 2.79078 2.95647 2.99573 3.03391 3.78937 3.81342 3.83090 4.01634 4.10454 4.18909 4.34804 4.49434 4.52979 4.59964 4.64181 4.69920 4.70927 4.76367 4.84246 4.86522 4.94016 5.01735 5.06152 5.10833 5.20168 5.27411 5.29919 5.32933 5.36506 5.44118 5.57123 5.89016 5.94529 6.38207 6.66448 7.01129 7.26439 7.83558 8.49119 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.005321 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.520749 B = 5260.602261 C = 6571.845026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.133 3.867 4 N -0.422 5.422 5 C -0.352 4.352 6 H 0.084 0.916 7 C 0.012 3.988 8 N -0.845 5.845 9 Si 0.989 3.011 10 H -0.273 1.273 11 H -0.264 1.264 12 H -0.274 1.274 13 C 0.484 3.516 14 O -0.610 6.610 15 C -0.094 4.094 16 O -0.181 6.181 17 C 0.196 3.804 18 C 0.014 3.986 19 C -0.173 4.173 20 C -0.174 4.174 21 C -0.152 4.152 22 N -0.494 5.494 23 C 0.031 3.969 24 C -0.062 4.062 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.281 0.719 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -1.679 -10.406 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.145 4.145 3 C 0.010 3.990 4 N -0.136 5.136 5 C -0.479 4.479 6 H 0.102 0.898 7 C -0.194 4.194 8 N -0.481 5.481 9 Si 0.812 3.188 10 H -0.199 1.199 11 H -0.188 1.188 12 H -0.199 1.199 13 C 0.274 3.726 14 O -0.501 6.501 15 C -0.150 4.150 16 O -0.068 6.068 17 C -0.010 4.010 18 C -0.023 4.023 19 C -0.192 4.192 20 C -0.210 4.210 21 C -0.189 4.189 22 N -0.224 5.224 23 C -0.093 4.093 24 C -0.119 4.119 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.497 -1.681 -10.802 15.156 hybrid contribution 0.733 0.075 1.663 1.818 sum -9.764 -1.606 -9.140 13.470 Atomic orbital electron populations 1.21454 0.93983 1.01338 1.01187 1.21718 0.96769 0.95912 1.00107 1.21708 0.78268 0.98833 1.00171 1.44020 1.07173 1.57804 1.04566 1.19735 0.93402 1.51678 0.83064 0.89786 1.26039 0.96773 0.94873 1.01708 1.70206 1.14461 1.34324 1.29088 0.85070 0.78368 0.78870 0.76480 1.19870 1.18817 1.19920 1.16472 0.86185 0.88281 0.81630 1.90601 1.13573 1.60148 1.85765 1.23128 0.81414 1.12781 0.97636 1.84744 1.25095 1.67945 1.29057 1.27243 0.98778 0.97443 0.77521 1.19934 0.84503 0.96062 1.01827 1.22024 1.03770 0.94048 0.99407 1.23168 1.02287 1.03110 0.92475 1.23117 0.90297 1.03648 1.01814 1.70202 0.98272 1.19709 1.34226 1.22191 0.98407 1.01407 0.87311 1.20168 0.86224 1.02773 1.02747 0.92980 0.92646 0.92451 0.96605 0.90341 0.89736 0.93009 0.90832 0.86567 0.85671 0.89972 0.87336 0.88931 0.87988 0.86448 0.90482 0.88964 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.11 -4.56 5.20 30.60 0.16 -4.40 16 3 C 0.13 6.15 4.16 86.38 0.36 6.51 16 4 N -0.42 -22.71 2.62 -640.16 -1.68 -24.39 16 5 C -0.35 -19.73 9.46 84.10 0.80 -18.93 16 6 H 0.08 5.04 7.28 -2.91 -0.02 5.02 16 7 C 0.01 0.60 4.96 84.95 0.42 1.02 16 8 N -0.85 -40.63 8.07 21.68 0.17 -40.46 16 9 Si 0.99 40.10 29.62 68.60 2.03 42.13 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 C 0.48 26.22 7.57 86.42 0.65 26.87 16 14 O -0.61 -35.79 14.46 -4.45 -0.06 -35.85 16 15 C -0.09 -4.38 6.67 24.04 0.16 -4.22 16 16 O -0.18 -7.28 6.15 -7.48 -0.05 -7.32 16 17 C 0.20 6.56 7.53 88.29 0.66 7.22 16 18 C 0.01 0.31 6.12 29.85 0.18 0.49 16 19 C -0.17 -3.58 5.72 -10.79 -0.06 -3.64 16 20 C -0.17 -2.87 10.18 30.62 0.31 -2.56 16 21 C -0.15 -2.16 10.25 30.62 0.31 -1.84 16 22 N -0.49 -18.37 11.26 -290.93 -3.27 -21.65 16 23 C 0.03 1.30 7.16 41.87 0.30 1.60 16 24 C -0.06 -2.28 9.82 71.24 0.70 -1.58 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.02 0.69 6.90 -2.39 -0.02 0.67 16 29 H 0.08 3.83 5.91 -2.39 -0.01 3.81 16 30 H 0.08 4.08 6.06 -2.39 -0.01 4.07 16 31 H 0.05 2.28 5.64 -2.38 -0.01 2.27 16 32 H 0.28 12.46 8.31 -92.71 -0.77 11.69 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.13 2.16 7.88 -2.39 -0.02 2.14 16 35 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 36 H 0.11 1.56 8.03 -2.39 -0.02 1.54 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.07 2.97 6.60 -2.39 -0.02 2.95 16 Total: -1.00 -65.50 342.17 3.84 -61.66 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 1.02 Total: 22.62 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.67 Total: 3.26 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -4.78 Total: -86.49 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.11 Total: -43.18 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -65.50 3.84 -61.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530402183.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.168 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds