Wall clock time and date at job start Tue Mar 31 2020 06:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46864 * 2 1 4 4 H 1.09001 * 109.46865 * 54.37632 * 3 2 1 5 5 C 1.50707 * 109.46854 * 174.36847 * 3 2 1 6 6 H 1.07994 * 119.99404 * 119.99904 * 5 3 2 7 7 C 1.37874 * 120.00306 * 300.00145 * 5 3 2 8 8 N 1.31528 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00259 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47360 * 89.99963 * 9 7 5 11 11 H 1.48497 * 109.47267 * 210.00001 * 9 7 5 12 12 H 1.48500 * 109.47090 * 329.99850 * 9 7 5 13 13 N 1.46901 * 109.47138 * 294.36957 * 3 2 1 14 14 C 1.46897 * 110.99855 * 155.60146 * 13 3 2 15 15 H 1.09000 * 109.46894 * 33.26430 * 14 13 3 16 16 C 1.53001 * 109.46927 * 273.26443 * 14 13 3 17 17 C 1.50695 * 109.47397 * 153.26452 * 14 13 3 18 18 C 1.38259 * 119.99626 * 24.99729 * 17 14 13 19 19 C 1.38213 * 120.00218 * 180.02562 * 18 17 14 20 20 N 1.48017 * 120.00622 * 179.97438 * 19 18 17 21 21 O 1.21808 * 119.99702 * 359.97438 * 20 19 18 22 22 O 1.21796 * 120.00372 * 179.72640 * 20 19 18 23 23 C 1.38261 * 119.99503 * 0.25257 * 19 18 17 24 24 C 1.38208 * 119.99974 * 359.47419 * 23 19 18 25 25 C 1.38212 * 120.00634 * 204.98326 * 17 14 13 26 26 C 1.50707 * 119.99466 * 359.97103 * 25 17 14 27 27 H 1.09001 * 109.47079 * 185.64783 * 1 2 3 28 28 H 1.08995 * 109.47355 * 305.65016 * 1 2 3 29 29 H 1.08997 * 109.47080 * 65.65059 * 1 2 3 30 30 H 1.09001 * 109.47293 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99528 * 2 1 3 32 32 H 0.96997 * 119.99688 * 180.02562 * 8 7 5 33 33 H 1.00895 * 110.99595 * 31.64377 * 13 3 2 34 34 H 1.08991 * 109.47255 * 305.37422 * 16 14 13 35 35 H 1.09006 * 109.46943 * 65.37887 * 16 14 13 36 36 H 1.09005 * 109.46508 * 185.37391 * 16 14 13 37 37 H 1.07999 * 120.00455 * 359.97438 * 18 17 14 38 38 H 1.08009 * 119.99786 * 179.73356 * 23 19 18 39 39 H 1.08001 * 120.00115 * 180.29998 * 24 23 19 40 40 H 1.08992 * 109.47077 * 90.00549 * 26 25 17 41 41 H 1.08997 * 109.46870 * 210.00712 * 26 25 17 42 42 H 1.09000 * 109.47012 * 330.00207 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9846 0.8354 5 6 3.5405 1.4449 0.1394 6 1 4.1537 1.8866 -0.6320 7 6 4.1304 0.8831 1.2518 8 7 3.3835 0.3446 2.1910 9 14 5.9903 0.8865 1.4249 10 1 6.4197 2.1220 2.1281 11 1 6.4169 -0.3017 2.2068 12 1 6.6129 0.8420 0.0775 13 7 1.6643 2.0948 -1.2616 14 6 1.5976 3.5534 -1.1007 15 1 2.3457 3.8734 -0.3754 16 6 0.2050 3.9486 -0.6053 17 6 1.8665 4.2178 -2.4262 18 6 1.6159 3.5379 -3.6037 19 6 1.8630 4.1471 -4.8195 20 7 1.5953 3.4190 -6.0802 21 8 1.1576 2.2828 -6.0461 22 8 1.8083 3.9576 -7.1516 23 6 2.3657 5.4345 -4.8581 24 6 2.6109 6.1162 -3.6811 25 6 2.3634 5.5070 -2.4650 26 6 2.6356 6.2484 -1.1815 27 1 -0.3633 -1.0227 0.1011 28 1 -0.3634 0.5989 0.8350 29 1 -0.3633 0.4237 -0.9362 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7985 -0.0503 2.9737 33 1 0.7915 1.7292 -1.6116 34 1 -0.5490 3.5458 -1.2814 35 1 0.0478 3.5464 0.3956 36 1 0.1244 5.0353 -0.5770 37 1 1.2279 2.5305 -3.5736 38 1 2.5629 5.9089 -5.8082 39 1 2.9990 7.1236 -3.7113 40 1 3.6601 6.0580 -0.8622 41 1 2.4982 7.3175 -1.3434 42 1 1.9451 5.9060 -0.4107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568996595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:14 Heat of formation + Delta-G solvation = 7.979249 kcal Electronic energy + Delta-G solvation = -23908.794853 eV Core-core repulsion = 20470.558988 eV Total energy + Delta-G solvation = -3438.235865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99850 -39.92101 -36.93657 -36.37296 -34.14860 -33.09136 -31.75627 -30.31994 -28.60030 -28.49541 -26.21361 -25.00030 -23.89776 -22.91877 -21.64933 -20.57790 -19.74351 -18.59516 -18.38984 -17.34752 -16.31730 -15.88099 -15.68390 -15.07248 -14.77064 -14.23331 -14.00375 -13.91317 -13.59205 -13.14806 -12.66911 -12.53166 -12.45910 -12.15318 -12.06313 -11.96201 -11.77444 -11.42272 -11.28588 -11.12552 -11.01434 -10.98169 -10.91208 -10.74175 -10.63721 -10.04406 -9.82751 -9.71041 -9.25045 -9.21605 -8.87924 -8.44097 -7.44574 -6.05648 -4.10260 0.00457 1.08738 1.50310 1.60132 3.25036 3.33283 3.36124 3.37882 4.36409 4.44385 4.50681 4.67109 4.79263 4.88629 5.20517 5.24215 5.30645 5.42737 5.45124 5.53102 5.55578 5.66985 5.79289 5.86213 5.94681 6.07516 6.09654 6.10863 6.21742 6.23916 6.36499 6.40423 6.51300 6.67394 6.77896 6.99345 7.07093 7.38036 7.68747 7.81125 7.82357 8.13012 8.28300 8.59138 8.97443 9.55329 10.99504 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.004860 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.238927 B = 5759.392243 C = 6114.847294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.123 3.877 15 H 0.104 0.896 16 C -0.176 4.176 17 C -0.054 4.054 18 C -0.025 4.025 19 C -0.056 4.056 20 N 0.034 4.966 21 O -0.161 6.161 22 O -0.178 6.178 23 C -0.066 4.066 24 C -0.125 4.125 25 C -0.032 4.032 26 C -0.128 4.128 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.100 0.900 32 H 0.260 0.740 33 H 0.321 0.679 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 11.550 -6.588 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.313 5.313 14 C 0.012 3.988 15 H 0.122 0.878 16 C -0.235 4.235 17 C -0.056 4.056 18 C -0.044 4.044 19 C -0.140 4.140 20 N 0.551 4.449 21 O -0.378 6.378 22 O -0.391 6.391 23 C -0.085 4.085 24 C -0.143 4.143 25 C -0.032 4.032 26 C -0.184 4.184 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.175 0.825 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.968 11.789 -6.055 13.835 hybrid contribution 0.182 -0.228 0.225 0.368 sum -3.787 11.561 -5.830 13.490 Atomic orbital electron populations 1.21882 0.99531 0.99877 0.99466 1.21775 0.91276 1.00201 1.03266 1.19182 0.95458 0.90061 0.83813 0.97662 1.21181 0.91175 1.36913 1.04236 0.92179 1.24933 0.98016 0.95500 0.95864 1.69866 1.34714 1.39246 1.09541 0.86583 0.85845 0.77422 0.78080 1.20885 1.21275 1.19948 1.60804 1.35751 1.00887 1.33813 1.20437 0.96602 0.90469 0.91300 0.87784 1.22523 0.97440 1.01379 1.02145 1.20051 0.97137 0.92795 0.95593 1.20941 0.93978 1.00852 0.88664 1.21119 1.13767 0.95131 0.83933 1.43665 0.97620 1.00789 1.02793 1.94552 1.45860 1.03086 1.94258 1.94484 1.56446 1.70247 1.17880 1.20891 0.95485 0.91542 1.00567 1.20957 1.02177 1.00745 0.90461 1.20257 0.93295 0.93667 0.96027 1.21031 1.03780 0.99450 0.94166 0.94293 0.93904 0.94626 0.93905 0.88146 0.93001 0.86091 0.92797 0.91494 0.92593 0.82486 0.83619 0.84073 0.89576 0.91007 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.64 37.16 0.36 -2.37 16 2 C -0.13 -2.82 5.37 -26.73 -0.14 -2.96 16 3 C 0.22 5.03 1.84 -68.86 -0.13 4.90 16 4 H 0.01 0.14 7.29 -51.93 -0.38 -0.24 16 5 C -0.50 -12.84 8.47 -34.44 -0.29 -13.13 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.52 5.29 -17.81 -0.09 1.43 16 8 N -0.89 -24.25 11.29 55.43 0.63 -23.62 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -12.88 5.01 -102.16 -0.51 -13.39 16 14 C 0.12 1.97 1.90 -68.87 -0.13 1.83 16 15 H 0.10 1.85 6.45 -51.93 -0.33 1.51 16 16 C -0.18 -2.39 8.90 37.16 0.33 -2.06 16 17 C -0.05 -0.78 5.06 -104.63 -0.53 -1.31 16 18 C -0.03 -0.38 8.83 -39.58 -0.35 -0.73 16 19 C -0.06 -0.84 6.85 -79.95 -0.55 -1.39 16 20 N 0.03 0.56 4.45 33.96 0.15 0.71 16 21 O -0.16 -2.83 18.45 -29.46 -0.54 -3.37 16 22 O -0.18 -2.90 18.45 -29.46 -0.54 -3.45 16 23 C -0.07 -0.79 9.56 -39.58 -0.38 -1.17 16 24 C -0.12 -1.32 9.70 -39.59 -0.38 -1.70 16 25 C -0.03 -0.38 5.88 -104.62 -0.62 -1.00 16 26 C -0.13 -1.27 9.22 36.01 0.33 -0.94 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.54 5.94 -51.93 -0.31 2.23 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.32 5.60 5.76 -39.29 -0.23 5.37 16 34 H 0.05 0.69 8.03 -51.93 -0.42 0.28 16 35 H 0.07 0.98 7.62 -51.93 -0.40 0.58 16 36 H 0.06 0.64 7.03 -51.93 -0.37 0.27 16 37 H 0.16 2.52 6.50 -52.49 -0.34 2.18 16 38 H 0.15 1.50 7.61 -52.48 -0.40 1.10 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.08 0.83 5.49 -51.93 -0.29 0.54 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -28.06 344.22 -9.10 -37.17 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.88 Total: 5.62 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.57 Total: -20.60 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.27 Total: -36.30 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -1.09 Total: -6.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.06 -9.10 -37.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568996595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.145 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds