Wall clock time and date at job start Tue Mar 31 2020 06:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53010 * 109.46864 * 2 1 4 4 H 1.09001 * 109.46865 * 54.37632 * 3 2 1 5 5 C 1.50707 * 109.46854 * 174.36847 * 3 2 1 6 6 H 1.07994 * 119.99404 * 119.99904 * 5 3 2 7 7 C 1.37874 * 120.00306 * 300.00145 * 5 3 2 8 8 N 1.31528 * 119.99699 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00259 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47360 * 89.99963 * 9 7 5 11 11 H 1.48497 * 109.47267 * 210.00001 * 9 7 5 12 12 H 1.48500 * 109.47090 * 329.99850 * 9 7 5 13 13 N 1.46901 * 109.47138 * 294.36957 * 3 2 1 14 14 C 1.46897 * 110.99855 * 155.60146 * 13 3 2 15 15 H 1.09000 * 109.46894 * 33.26430 * 14 13 3 16 16 C 1.53001 * 109.46927 * 273.26443 * 14 13 3 17 17 C 1.50695 * 109.47397 * 153.26452 * 14 13 3 18 18 C 1.38259 * 119.99626 * 24.99729 * 17 14 13 19 19 C 1.38213 * 120.00218 * 180.02562 * 18 17 14 20 20 N 1.48017 * 120.00622 * 179.97438 * 19 18 17 21 21 O 1.21808 * 119.99702 * 359.97438 * 20 19 18 22 22 O 1.21796 * 120.00372 * 179.72640 * 20 19 18 23 23 C 1.38261 * 119.99503 * 0.25257 * 19 18 17 24 24 C 1.38208 * 119.99974 * 359.47419 * 23 19 18 25 25 C 1.38212 * 120.00634 * 204.98326 * 17 14 13 26 26 C 1.50707 * 119.99466 * 359.97103 * 25 17 14 27 27 H 1.09001 * 109.47079 * 185.64783 * 1 2 3 28 28 H 1.08995 * 109.47355 * 305.65016 * 1 2 3 29 29 H 1.08997 * 109.47080 * 65.65059 * 1 2 3 30 30 H 1.09001 * 109.47293 * 240.00304 * 2 1 3 31 31 H 1.09001 * 109.47215 * 119.99528 * 2 1 3 32 32 H 0.96997 * 119.99688 * 180.02562 * 8 7 5 33 33 H 1.00895 * 110.99595 * 31.64377 * 13 3 2 34 34 H 1.08991 * 109.47255 * 305.37422 * 16 14 13 35 35 H 1.09006 * 109.46943 * 65.37887 * 16 14 13 36 36 H 1.09005 * 109.46508 * 185.37391 * 16 14 13 37 37 H 1.07999 * 120.00455 * 359.97438 * 18 17 14 38 38 H 1.08009 * 119.99786 * 179.73356 * 23 19 18 39 39 H 1.08001 * 120.00115 * 180.29998 * 24 23 19 40 40 H 1.08992 * 109.47077 * 90.00549 * 26 25 17 41 41 H 1.08997 * 109.46870 * 210.00712 * 26 25 17 42 42 H 1.09000 * 109.47012 * 330.00207 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9846 0.8354 5 6 3.5405 1.4449 0.1394 6 1 4.1537 1.8866 -0.6320 7 6 4.1304 0.8831 1.2518 8 7 3.3835 0.3446 2.1910 9 14 5.9903 0.8865 1.4249 10 1 6.4197 2.1220 2.1281 11 1 6.4169 -0.3017 2.2068 12 1 6.6129 0.8420 0.0775 13 7 1.6643 2.0948 -1.2616 14 6 1.5976 3.5534 -1.1007 15 1 2.3457 3.8734 -0.3754 16 6 0.2050 3.9486 -0.6053 17 6 1.8665 4.2178 -2.4262 18 6 1.6159 3.5379 -3.6037 19 6 1.8630 4.1471 -4.8195 20 7 1.5953 3.4190 -6.0802 21 8 1.1576 2.2828 -6.0461 22 8 1.8083 3.9576 -7.1516 23 6 2.3657 5.4345 -4.8581 24 6 2.6109 6.1162 -3.6811 25 6 2.3634 5.5070 -2.4650 26 6 2.6356 6.2484 -1.1815 27 1 -0.3633 -1.0227 0.1011 28 1 -0.3634 0.5989 0.8350 29 1 -0.3633 0.4237 -0.9362 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7985 -0.0503 2.9737 33 1 0.7915 1.7292 -1.6116 34 1 -0.5490 3.5458 -1.2814 35 1 0.0478 3.5464 0.3956 36 1 0.1244 5.0353 -0.5770 37 1 1.2279 2.5305 -3.5736 38 1 2.5629 5.9089 -5.8082 39 1 2.9990 7.1236 -3.7113 40 1 3.6601 6.0580 -0.8622 41 1 2.4982 7.3175 -1.3434 42 1 1.9451 5.9060 -0.4107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568996595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:13 Heat of formation + Delta-G solvation = -6.075231 kcal Electronic energy + Delta-G solvation = -23909.404301 eV Core-core repulsion = 20470.558988 eV Total energy + Delta-G solvation = -3438.845313 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.22367 -41.00985 -38.42809 -37.64526 -35.59762 -34.29387 -33.49951 -31.55679 -29.93910 -29.57460 -28.00819 -26.09583 -25.10887 -24.53319 -22.77605 -21.79208 -21.46967 -19.81372 -19.62249 -18.58883 -18.29439 -17.16432 -16.71088 -16.50344 -16.29550 -15.65789 -15.16611 -14.98095 -14.93437 -14.47776 -14.28586 -13.75348 -13.60347 -13.31300 -13.18598 -13.04581 -13.01827 -12.95789 -12.77940 -12.69385 -12.57968 -12.37895 -12.29073 -12.14271 -12.01644 -11.92180 -11.55294 -11.38744 -11.04168 -10.43658 -10.22030 -9.97914 -9.04230 -8.07115 -6.18245 -1.16858 0.08424 0.36057 0.44728 1.38097 1.41924 1.50618 2.33720 2.42638 3.18338 3.36146 3.49584 3.59975 3.76411 3.91688 4.07903 4.25223 4.29177 4.35359 4.51418 4.57042 4.59457 4.67205 4.70128 4.78296 4.80188 4.87878 4.92428 5.02191 5.08147 5.16119 5.19188 5.23826 5.29719 5.37602 5.43023 5.59663 5.64475 5.76161 5.88440 6.35904 6.50173 6.53822 6.92217 6.95938 7.50730 8.95651 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.004860 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.238927 B = 5759.392243 C = 6114.847294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.232 3.768 4 H -0.017 1.017 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.687 5.687 14 C 0.126 3.874 15 H 0.083 0.917 16 C -0.167 4.167 17 C -0.070 4.070 18 C -0.040 4.040 19 C -0.074 4.074 20 N 0.035 4.965 21 O -0.211 6.211 22 O -0.162 6.162 23 C -0.057 4.057 24 C -0.108 4.108 25 C -0.025 4.025 26 C -0.129 4.129 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 14.385 -7.207 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.124 3.876 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.774 3.226 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.203 1.203 13 N -0.318 5.318 14 C 0.016 3.984 15 H 0.101 0.899 16 C -0.226 4.226 17 C -0.072 4.072 18 C -0.060 4.060 19 C -0.158 4.158 20 N 0.549 4.451 21 O -0.416 6.416 22 O -0.381 6.381 23 C -0.076 4.076 24 C -0.126 4.126 25 C -0.026 4.026 26 C -0.185 4.185 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.156 0.844 38 H 0.187 0.813 39 H 0.204 0.796 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.674 14.551 -6.651 16.415 hybrid contribution 0.125 -0.964 0.384 1.045 sum -3.549 13.587 -6.267 15.378 Atomic orbital electron populations 1.21741 0.96293 1.01054 1.00500 1.21618 0.94210 0.99386 1.01020 1.18880 0.93717 0.90365 0.84640 0.99960 1.21419 0.92886 1.36596 1.03810 0.93635 1.25567 1.01606 0.95399 0.95760 1.69985 1.35987 1.39831 1.09837 0.85724 0.81555 0.77633 0.77691 1.19891 1.21144 1.20307 1.60653 1.36511 1.02899 1.31779 1.20363 0.97451 0.88529 0.92106 0.89866 1.22416 0.95968 1.03048 1.01167 1.19923 0.99008 0.94119 0.94148 1.20808 0.95218 1.00460 0.89494 1.21282 1.15564 0.96209 0.82699 1.43937 0.97159 1.00673 1.03369 1.94558 1.48311 1.04186 1.94551 1.94438 1.55245 1.69857 1.18589 1.21306 0.93778 0.90130 1.02387 1.21432 1.00230 1.02169 0.88807 1.20585 0.91556 0.92565 0.97874 1.21122 1.03336 1.01304 0.92749 0.92814 0.93999 0.92614 0.95060 0.91323 0.93100 0.85273 0.92129 0.92971 0.89999 0.84351 0.81276 0.79555 0.89833 0.87444 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.64 71.98 0.69 -4.32 16 2 C -0.12 -5.67 5.37 30.60 0.16 -5.50 16 3 C 0.23 10.86 1.84 44.17 0.08 10.95 16 4 H -0.02 -0.87 7.29 -2.39 -0.02 -0.89 16 5 C -0.51 -27.05 8.47 25.60 0.22 -26.83 16 6 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 7 C 0.02 0.82 5.29 84.65 0.45 1.26 16 8 N -0.92 -50.87 11.29 21.45 0.24 -50.63 16 9 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.69 -26.63 5.01 -477.14 -2.39 -29.02 16 14 C 0.13 4.04 1.90 44.17 0.08 4.12 16 15 H 0.08 3.00 6.45 -2.39 -0.02 2.99 16 16 C -0.17 -4.42 8.90 71.98 0.64 -3.78 16 17 C -0.07 -1.97 5.06 -19.87 -0.10 -2.07 16 18 C -0.04 -1.23 8.83 22.27 0.20 -1.04 16 19 C -0.07 -2.12 6.85 36.38 0.25 -1.87 16 20 N 0.04 1.16 4.45 -46.46 -0.21 0.95 16 21 O -0.21 -7.70 18.45 18.88 0.35 -7.35 16 22 O -0.16 -5.08 18.45 18.89 0.35 -4.73 16 23 C -0.06 -1.19 9.56 22.27 0.21 -0.97 16 24 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 25 C -0.02 -0.53 5.88 -19.87 -0.12 -0.64 16 26 C -0.13 -2.12 9.22 71.24 0.66 -1.47 16 27 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.78 6.65 -2.39 -0.02 1.76 16 30 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 3.60 5.94 -2.39 -0.01 3.59 16 32 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.33 11.70 5.76 -89.70 -0.52 11.18 16 34 H 0.06 1.51 8.03 -2.39 -0.02 1.49 16 35 H 0.05 1.52 7.62 -2.38 -0.02 1.50 16 36 H 0.08 1.71 7.03 -2.38 -0.02 1.70 16 37 H 0.14 4.66 6.50 -2.91 -0.02 4.64 16 38 H 0.17 2.73 7.61 -2.91 -0.02 2.71 16 39 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 42 H 0.07 1.35 5.49 -2.39 -0.01 1.34 16 Total: -1.00 -63.17 344.22 4.53 -58.64 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.52 Total: 20.80 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 3.64 Total: -33.75 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.35 Total: -78.70 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.70 Total: -12.08 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -63.17 4.53 -58.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568996595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.562 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds