Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47427 * 2 1 4 4 H 1.09003 * 109.47408 * 304.38762 * 3 2 1 5 5 C 1.50703 * 109.47167 * 184.38859 * 3 2 1 6 6 H 1.08003 * 119.99833 * 245.31976 * 5 3 2 7 7 C 1.37880 * 120.00019 * 65.32389 * 5 3 2 8 8 N 1.31509 * 119.99573 * 192.84831 * 7 5 3 9 9 Si 1.86795 * 119.99842 * 12.84289 * 7 5 3 10 10 H 1.48502 * 109.46980 * 93.70049 * 9 7 5 11 11 H 1.48505 * 109.47053 * 213.69699 * 9 7 5 12 12 H 1.48497 * 109.47582 * 333.69973 * 9 7 5 13 13 N 1.46899 * 109.47200 * 64.38840 * 3 2 1 14 14 C 1.46900 * 111.00398 * 257.99535 * 13 3 2 15 15 C 1.50692 * 109.47682 * 185.13662 * 14 13 3 16 16 O 1.21292 * 119.99769 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00283 * 179.97438 * 15 14 13 18 18 C 1.39924 * 119.99818 * 185.15121 * 17 15 14 19 19 C 1.38934 * 120.03959 * 213.27460 * 18 17 15 20 20 C 1.38119 * 120.04030 * 179.70147 * 19 18 17 21 21 C 1.38214 * 120.12300 * 0.59253 * 20 19 18 22 22 C 1.38767 * 120.08356 * 359.67728 * 21 20 19 23 23 O 1.35902 * 120.01759 * 180.02562 * 22 21 20 24 24 C 1.42894 * 117.00179 * 0.02562 * 23 22 21 25 25 C 1.38626 * 119.96184 * 0.02686 * 22 21 20 26 26 H 1.09004 * 109.46958 * 296.61956 * 1 2 3 27 27 H 1.09004 * 109.46981 * 56.60997 * 1 2 3 28 28 H 1.08998 * 109.47429 * 176.61233 * 1 2 3 29 29 H 1.09006 * 109.46951 * 240.00005 * 2 1 3 30 30 H 1.09001 * 109.46876 * 120.00517 * 2 1 3 31 31 H 0.97005 * 119.99778 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00149 * 21.94380 * 13 3 2 33 33 H 1.09010 * 109.46715 * 305.13764 * 14 13 3 34 34 H 1.08999 * 109.47518 * 65.12978 * 14 13 3 35 35 H 0.96998 * 119.99918 * 5.15166 * 17 15 14 36 36 H 1.08001 * 119.98042 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.94266 * 180.29918 * 20 19 18 38 38 H 1.08002 * 119.96052 * 179.70505 * 21 20 19 39 39 H 1.08993 * 109.47384 * 300.00249 * 24 23 22 40 40 H 1.09005 * 109.47047 * 60.00346 * 24 23 22 41 41 H 1.09002 * 109.47013 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.06553 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6140 1.9785 -0.8481 5 6 3.5431 1.4437 -0.1087 6 1 4.1434 1.8129 0.7097 7 6 4.1520 0.9737 -1.2530 8 7 5.4455 0.7364 -1.2595 9 14 3.1395 0.6737 -2.7938 10 1 3.1842 1.8804 -3.6582 11 1 3.6970 -0.4866 -3.5344 12 1 1.7325 0.3888 -2.4140 13 7 1.6389 2.1037 1.2489 14 6 0.4831 2.9838 1.0309 15 6 0.1798 3.7382 2.2996 16 8 0.8593 3.5600 3.2884 17 7 -0.8466 4.6111 2.3357 18 6 -1.0623 5.3905 3.4776 19 6 -2.3555 5.7362 3.8496 20 6 -2.5689 6.5003 4.9802 21 6 -1.4967 6.9333 5.7373 22 6 -0.2025 6.5957 5.3673 23 8 0.8508 7.0217 6.1131 24 6 0.5523 7.8129 7.2650 25 6 0.0153 5.8238 4.2367 26 1 -0.3633 0.4605 0.9188 27 1 -0.3633 0.5656 -0.8581 28 1 -0.3634 -1.0258 -0.0607 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8738 0.4054 -2.0645 32 1 1.4460 1.4259 1.9712 33 1 0.7103 3.6910 0.2331 34 1 -0.3824 2.3840 0.7491 35 1 -1.4356 4.6990 1.5701 36 1 -3.1948 5.4034 3.2568 37 1 -3.5751 6.7640 5.2706 38 1 -1.6663 7.5347 6.6182 39 1 0.0258 8.7167 6.9586 40 1 -0.0762 7.2396 7.9465 41 1 1.4797 8.0852 7.7689 42 1 1.0218 5.5598 3.9475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582674425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = -34.093714 kcal Electronic energy + Delta-G solvation = -22901.839170 eV Core-core repulsion = 19461.778884 eV Total energy + Delta-G solvation = -3440.060286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.66266 -39.50949 -37.54537 -36.50287 -34.45518 -32.45866 -31.44393 -30.75848 -29.58098 -27.98395 -27.37776 -25.32789 -23.08436 -22.49272 -21.87307 -20.33006 -19.97400 -18.63937 -17.19325 -16.62904 -16.27362 -16.15951 -15.89518 -15.78091 -15.56706 -14.78975 -14.47426 -14.02094 -13.81755 -13.57794 -13.26465 -12.98688 -12.85870 -12.61446 -12.48163 -12.02858 -11.95059 -11.75855 -11.61241 -11.41688 -11.18821 -10.97250 -10.79963 -10.49463 -10.28254 -10.01114 -9.70109 -9.39570 -9.26555 -8.47131 -8.40911 -8.15180 -7.40370 -6.02986 -3.96604 1.15638 1.33381 2.75179 2.89226 3.26684 3.28378 3.34990 3.37827 3.70836 4.43269 4.63825 4.83276 4.89585 4.94080 4.95228 5.02990 5.09608 5.21819 5.22716 5.27067 5.43408 5.54554 5.68259 5.74070 5.78211 5.79509 5.95021 6.10863 6.14705 6.28673 6.33530 6.41954 6.49178 6.69084 6.76460 6.79411 7.14637 7.30372 7.36793 7.72908 7.87578 8.21381 8.32807 8.72452 9.15981 9.61496 11.10616 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.003177 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.843226 B = 8811.420274 C = 9496.161347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C 0.195 3.805 4 H 0.025 0.975 5 C -0.499 4.499 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.895 5.895 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.253 1.253 13 N -0.654 5.654 14 C 0.041 3.959 15 C 0.510 3.490 16 O -0.493 6.493 17 N -0.683 5.683 18 C 0.196 3.804 19 C -0.189 4.189 20 C -0.063 4.063 21 C -0.231 4.231 22 C 0.147 3.853 23 O -0.313 6.313 24 C 0.028 3.972 25 C -0.156 4.156 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.262 0.738 32 H 0.338 0.662 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.411 0.589 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 11.906 10.520 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C 0.087 3.913 4 H 0.042 0.958 5 C -0.537 4.537 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.534 5.534 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.286 5.286 14 C -0.092 4.092 15 C 0.298 3.702 16 O -0.364 6.364 17 N -0.329 5.329 18 C 0.101 3.899 19 C -0.209 4.209 20 C -0.081 4.081 21 C -0.251 4.251 22 C 0.101 3.899 23 O -0.226 6.226 24 C -0.067 4.067 25 C -0.177 4.177 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.247 0.753 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.790 12.115 10.977 24.161 hybrid contribution -1.673 -0.676 -1.301 2.225 sum -19.463 11.439 9.675 24.561 Atomic orbital electron populations 1.21973 0.98604 1.00493 1.00271 1.22665 0.92682 1.01615 1.02353 1.19617 0.96938 0.88130 0.86632 0.95752 1.21003 0.88804 1.40921 1.02966 0.89967 1.24922 0.94731 0.94984 0.98520 1.69952 1.10007 1.45042 1.28351 0.87285 0.81841 0.77926 0.84241 1.20803 1.21430 1.17764 1.60325 1.32371 1.25372 1.10533 1.21979 0.95499 0.97840 0.93882 1.21317 0.78817 0.78896 0.91197 1.90736 1.46961 1.63047 1.35699 1.43741 1.32683 1.39944 1.16579 1.17396 0.92641 0.91570 0.88339 1.20779 0.94872 1.05329 0.99947 1.20644 0.98340 0.95678 0.93480 1.21159 0.91967 1.08144 1.03821 1.18786 0.86237 0.93658 0.91243 1.86124 1.31434 1.66689 1.38381 1.23050 1.03132 0.94148 0.86346 1.20396 1.00548 1.00911 0.95870 0.93741 0.93540 0.93738 0.91757 0.92089 0.92781 0.84354 0.88042 0.92861 0.75307 0.85656 0.85581 0.85614 0.92729 0.92699 0.88247 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 8.87 37.16 0.33 -2.20 16 2 C -0.15 -3.16 4.50 -26.74 -0.12 -3.28 16 3 C 0.20 4.41 1.75 -68.87 -0.12 4.29 16 4 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 5 C -0.50 -14.03 9.29 -34.44 -0.32 -14.35 16 6 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 7 C 0.07 1.99 5.37 -17.82 -0.10 1.90 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 9 Si 0.86 20.60 25.76 -169.99 -4.38 16.22 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.54 5.36 56.52 0.30 -5.24 16 13 N -0.65 -13.41 5.60 -109.22 -0.61 -14.02 16 14 C 0.04 0.65 5.61 -4.98 -0.03 0.62 16 15 C 0.51 8.05 7.62 -10.99 -0.08 7.97 16 16 O -0.49 -9.82 14.01 5.55 0.08 -9.74 16 17 N -0.68 -8.21 5.34 -9.88 -0.05 -8.27 16 18 C 0.20 2.54 6.27 -83.72 -0.53 2.01 16 19 C -0.19 -1.93 9.96 -39.37 -0.39 -2.32 16 20 C -0.06 -0.59 10.03 -39.63 -0.40 -0.99 16 21 C -0.23 -2.41 9.04 -39.39 -0.36 -2.76 16 22 C 0.15 1.95 6.68 -39.24 -0.26 1.69 16 23 O -0.31 -4.08 10.49 -19.43 -0.20 -4.28 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 C -0.16 -2.36 8.59 -39.25 -0.34 -2.70 16 26 H 0.04 0.66 6.28 -51.93 -0.33 0.33 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.41 4.80 -51.93 -0.25 1.16 16 30 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.34 6.80 7.79 -39.29 -0.31 6.49 16 33 H 0.10 1.53 7.97 -51.92 -0.41 1.11 16 34 H 0.05 0.71 6.06 -51.93 -0.31 0.40 16 35 H 0.41 3.39 8.82 -40.82 -0.36 3.03 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 39 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 40 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.15 2.60 6.43 -52.49 -0.34 2.26 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -34.33 339.05 -6.95 -41.27 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.94 Total: 9.28 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -1.72 Total: -8.90 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.11 Total: -48.96 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.13 Total: -14.02 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.38 Total: 16.22 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.33 -6.95 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582674425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.180 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds