Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47427 * 2 1 4 4 H 1.09003 * 109.47408 * 304.38762 * 3 2 1 5 5 C 1.50703 * 109.47167 * 184.38859 * 3 2 1 6 6 H 1.08003 * 119.99833 * 245.31976 * 5 3 2 7 7 C 1.37880 * 120.00019 * 65.32389 * 5 3 2 8 8 N 1.31509 * 119.99573 * 192.84831 * 7 5 3 9 9 Si 1.86795 * 119.99842 * 12.84289 * 7 5 3 10 10 H 1.48502 * 109.46980 * 93.70049 * 9 7 5 11 11 H 1.48505 * 109.47053 * 213.69699 * 9 7 5 12 12 H 1.48497 * 109.47582 * 333.69973 * 9 7 5 13 13 N 1.46899 * 109.47200 * 64.38840 * 3 2 1 14 14 C 1.46900 * 111.00398 * 257.99535 * 13 3 2 15 15 C 1.50692 * 109.47682 * 185.13662 * 14 13 3 16 16 O 1.21292 * 119.99769 * 359.97438 * 15 14 13 17 17 N 1.34780 * 120.00283 * 179.97438 * 15 14 13 18 18 C 1.39924 * 119.99818 * 185.15121 * 17 15 14 19 19 C 1.38934 * 120.03959 * 213.27460 * 18 17 15 20 20 C 1.38119 * 120.04030 * 179.70147 * 19 18 17 21 21 C 1.38214 * 120.12300 * 0.59253 * 20 19 18 22 22 C 1.38767 * 120.08356 * 359.67728 * 21 20 19 23 23 O 1.35902 * 120.01759 * 180.02562 * 22 21 20 24 24 C 1.42894 * 117.00179 * 0.02562 * 23 22 21 25 25 C 1.38626 * 119.96184 * 0.02686 * 22 21 20 26 26 H 1.09004 * 109.46958 * 296.61956 * 1 2 3 27 27 H 1.09004 * 109.46981 * 56.60997 * 1 2 3 28 28 H 1.08998 * 109.47429 * 176.61233 * 1 2 3 29 29 H 1.09006 * 109.46951 * 240.00005 * 2 1 3 30 30 H 1.09001 * 109.46876 * 120.00517 * 2 1 3 31 31 H 0.97005 * 119.99778 * 179.97438 * 8 7 5 32 32 H 1.00904 * 111.00149 * 21.94380 * 13 3 2 33 33 H 1.09010 * 109.46715 * 305.13764 * 14 13 3 34 34 H 1.08999 * 109.47518 * 65.12978 * 14 13 3 35 35 H 0.96998 * 119.99918 * 5.15166 * 17 15 14 36 36 H 1.08001 * 119.98042 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.94266 * 180.29918 * 20 19 18 38 38 H 1.08002 * 119.96052 * 179.70505 * 21 20 19 39 39 H 1.08993 * 109.47384 * 300.00249 * 24 23 22 40 40 H 1.09005 * 109.47047 * 60.00346 * 24 23 22 41 41 H 1.09002 * 109.47013 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.06553 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6140 1.9785 -0.8481 5 6 3.5431 1.4437 -0.1087 6 1 4.1434 1.8129 0.7097 7 6 4.1520 0.9737 -1.2530 8 7 5.4455 0.7364 -1.2595 9 14 3.1395 0.6737 -2.7938 10 1 3.1842 1.8804 -3.6582 11 1 3.6970 -0.4866 -3.5344 12 1 1.7325 0.3888 -2.4140 13 7 1.6389 2.1037 1.2489 14 6 0.4831 2.9838 1.0309 15 6 0.1798 3.7382 2.2996 16 8 0.8593 3.5600 3.2884 17 7 -0.8466 4.6111 2.3357 18 6 -1.0623 5.3905 3.4776 19 6 -2.3555 5.7362 3.8496 20 6 -2.5689 6.5003 4.9802 21 6 -1.4967 6.9333 5.7373 22 6 -0.2025 6.5957 5.3673 23 8 0.8508 7.0217 6.1131 24 6 0.5523 7.8129 7.2650 25 6 0.0153 5.8238 4.2367 26 1 -0.3633 0.4605 0.9188 27 1 -0.3633 0.5656 -0.8581 28 1 -0.3634 -1.0258 -0.0607 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.8738 0.4054 -2.0645 32 1 1.4460 1.4259 1.9712 33 1 0.7103 3.6910 0.2331 34 1 -0.3824 2.3840 0.7491 35 1 -1.4356 4.6990 1.5701 36 1 -3.1948 5.4034 3.2568 37 1 -3.5751 6.7640 5.2706 38 1 -1.6663 7.5347 6.6182 39 1 0.0258 8.7167 6.9586 40 1 -0.0762 7.2396 7.9465 41 1 1.4797 8.0852 7.7689 42 1 1.0218 5.5598 3.9475 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582674425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = -61.218860 kcal Electronic energy + Delta-G solvation = -22903.015404 eV Core-core repulsion = 19461.778884 eV Total energy + Delta-G solvation = -3441.236521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67878 -40.54223 -38.66188 -37.96395 -35.52696 -34.48440 -32.96625 -31.65471 -30.61885 -29.55601 -28.11749 -26.86383 -24.34136 -23.80532 -22.84207 -21.79751 -21.37031 -19.58786 -18.92554 -18.04387 -17.28851 -17.22688 -16.78506 -16.73603 -16.66922 -16.53962 -15.85915 -15.48308 -15.01379 -14.78495 -14.49345 -14.37414 -14.18227 -13.74212 -13.52682 -13.35896 -13.22617 -13.02635 -12.71053 -12.63845 -12.45370 -12.34980 -12.24413 -12.01302 -11.68310 -11.39258 -11.25183 -11.23128 -10.83158 -10.53241 -9.43979 -9.04043 -8.96606 -8.23513 -6.23390 0.23967 0.46610 1.38106 1.40446 1.50752 1.59556 1.91005 2.39695 2.43481 2.82550 3.09381 3.55198 3.78131 3.90903 4.13878 4.24393 4.25501 4.29964 4.33926 4.39499 4.43242 4.46307 4.47942 4.50729 4.58603 4.70323 4.78648 4.83319 5.08965 5.18916 5.21410 5.29288 5.33205 5.35981 5.49029 5.52623 5.74232 5.88241 6.00973 6.39963 6.47759 6.68608 6.74433 6.83513 7.17340 7.40050 8.94841 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025042 B = 0.003177 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.843226 B = 8811.420274 C = 9496.161347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.039 0.961 5 C -0.511 4.511 6 H 0.020 0.980 7 C 0.005 3.995 8 N -0.954 5.954 9 Si 0.937 3.063 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.212 1.212 13 N -0.682 5.682 14 C 0.044 3.956 15 C 0.511 3.489 16 O -0.546 6.546 17 N -0.662 5.662 18 C 0.177 3.823 19 C -0.179 4.179 20 C -0.055 4.055 21 C -0.225 4.225 22 C 0.127 3.873 23 O -0.348 6.348 24 C 0.019 3.981 25 C -0.195 4.195 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.337 0.663 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.431 0.569 36 H 0.160 0.840 37 H 0.168 0.832 38 H 0.155 0.845 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.653 12.629 9.818 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.550 4.550 6 H 0.038 0.962 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.134 1.134 13 N -0.314 5.314 14 C -0.088 4.088 15 C 0.300 3.700 16 O -0.421 6.421 17 N -0.310 5.310 18 C 0.082 3.918 19 C -0.199 4.199 20 C -0.073 4.073 21 C -0.244 4.244 22 C 0.082 3.918 23 O -0.262 6.262 24 C -0.075 4.075 25 C -0.216 4.216 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.178 0.822 37 H 0.186 0.814 38 H 0.172 0.828 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.321 12.880 10.278 28.555 hybrid contribution 0.079 -0.776 -0.885 1.180 sum -23.242 12.103 9.393 27.837 Atomic orbital electron populations 1.21883 0.94429 1.02402 1.01755 1.22506 0.96342 0.99199 1.01142 1.19382 0.93096 0.90128 0.87956 0.94329 1.21344 0.92046 1.40258 1.01314 0.96197 1.25933 0.95955 0.94617 1.02579 1.70144 1.12683 1.47045 1.29543 0.86059 0.81909 0.77631 0.78412 1.20322 1.21692 1.13436 1.60035 1.35828 1.25818 1.09722 1.22032 0.95133 0.97577 0.94059 1.21344 0.79012 0.79168 0.90488 1.90733 1.49035 1.64925 1.37444 1.43432 1.31736 1.38505 1.17304 1.17606 0.93385 0.92260 0.88549 1.21161 0.94185 1.04265 1.00280 1.21193 0.99852 0.93936 0.92343 1.21521 0.90738 1.07562 1.04620 1.18990 0.87648 0.94101 0.91109 1.86078 1.32600 1.67604 1.39920 1.23358 1.04525 0.94437 0.85162 1.20318 0.99416 1.03643 0.98228 0.92355 0.91896 0.91736 0.92964 0.93543 0.92775 0.84465 0.87093 0.88927 0.72875 0.82237 0.81429 0.82770 0.90920 0.91390 0.86988 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.87 71.98 0.64 -3.50 16 2 C -0.15 -6.00 4.50 30.59 0.14 -5.86 16 3 C 0.20 9.11 1.75 44.17 0.08 9.19 16 4 H 0.04 1.63 6.21 -2.39 -0.01 1.62 16 5 C -0.51 -30.14 9.29 25.60 0.24 -29.90 16 6 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 7 C 0.01 0.32 5.37 84.66 0.45 0.77 16 8 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 9 Si 0.94 42.50 25.76 68.60 1.77 44.26 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.21 -8.16 5.36 99.48 0.53 -7.63 16 13 N -0.68 -28.30 5.60 -499.47 -2.80 -31.10 16 14 C 0.04 1.32 5.61 85.55 0.48 1.80 16 15 C 0.51 16.16 7.62 87.65 0.67 16.82 16 16 O -0.55 -23.02 14.01 -3.07 -0.04 -23.07 16 17 N -0.66 -15.03 5.34 -303.55 -1.62 -16.65 16 18 C 0.18 4.43 6.27 38.14 0.24 4.67 16 19 C -0.18 -3.02 9.96 22.41 0.22 -2.80 16 20 C -0.05 -0.80 10.03 22.24 0.22 -0.58 16 21 C -0.23 -4.12 9.04 22.39 0.20 -3.92 16 22 C 0.13 3.43 6.68 22.49 0.15 3.59 16 23 O -0.35 -9.45 10.49 -92.45 -0.97 -10.42 16 24 C 0.02 0.29 9.81 113.37 1.11 1.40 16 25 C -0.19 -6.21 8.59 22.49 0.19 -6.02 16 26 H 0.06 1.48 6.28 -2.39 -0.01 1.46 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 2.16 4.80 -2.38 -0.01 2.14 16 30 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 31 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 32 H 0.34 13.86 7.79 -89.69 -0.70 13.16 16 33 H 0.11 3.12 7.97 -2.38 -0.02 3.10 16 34 H 0.09 2.08 6.06 -2.39 -0.01 2.07 16 35 H 0.43 5.80 8.82 -92.71 -0.82 4.98 16 36 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 37 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.15 1.85 6.29 -2.91 -0.02 1.83 16 39 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 40 H 0.07 0.81 7.66 -2.38 -0.02 0.79 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 4.07 6.43 -2.91 -0.02 4.05 16 Total: -1.00 -83.95 339.05 1.04 -82.91 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.64 Total: 29.52 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 5.04 Total: -14.33 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.12 Total: -108.87 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.01 Total: -33.49 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.77 Total: 44.26 kcal Total: -83.95 1.04 -82.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582674425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.693 kcal (2) G-P(sol) polarization free energy of solvation -83.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds