Wall clock time and date at job start Tue Mar 31 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00316 * 2 1 4 4 O 1.20827 * 119.99537 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00058 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47024 * 174.46762 * 5 3 2 7 7 C 1.53002 * 109.47077 * 297.88559 * 6 5 3 8 8 N 1.46899 * 109.47141 * 177.88465 * 6 5 3 9 9 C 1.46892 * 111.00162 * 185.05900 * 8 6 5 10 10 C 1.53003 * 109.47582 * 184.53393 * 9 8 6 11 11 C 1.50697 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99781 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99939 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47233 * 90.00168 * 15 13 11 17 17 H 1.48505 * 109.46899 * 209.99925 * 15 13 11 18 18 H 1.48500 * 109.47299 * 330.00051 * 15 13 11 19 19 C 1.50706 * 109.47183 * 57.88369 * 6 5 3 20 20 C 1.38646 * 120.79057 * 234.42157 * 19 6 5 21 21 C 1.38199 * 119.16309 * 180.29543 * 20 19 6 22 22 N 1.31868 * 120.76429 * 359.97438 * 21 20 19 23 23 C 1.31870 * 121.72826 * 359.97438 * 22 21 20 24 24 C 1.38208 * 120.76369 * 0.02918 * 23 22 21 25 25 H 1.08997 * 109.46829 * 60.00221 * 1 2 3 26 26 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47335 * 300.00181 * 1 2 3 28 28 H 1.09000 * 109.47409 * 54.46948 * 5 3 2 29 29 H 1.09003 * 109.47269 * 294.46545 * 5 3 2 30 30 H 1.08997 * 109.47163 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.46949 * 300.00092 * 7 6 5 32 32 H 1.09002 * 109.47080 * 60.00092 * 7 6 5 33 33 H 1.00901 * 110.99948 * 61.10434 * 8 6 5 34 34 H 1.08999 * 109.47529 * 304.53685 * 9 8 6 35 35 H 1.09011 * 109.47094 * 64.53488 * 9 8 6 36 36 H 1.09004 * 109.46789 * 299.99924 * 10 9 8 37 37 H 1.08997 * 109.47021 * 60.00062 * 10 9 8 38 38 H 0.96996 * 119.99746 * 179.97438 * 14 13 11 39 39 H 1.08001 * 120.41711 * 0.24979 * 20 19 6 40 40 H 1.08002 * 119.61817 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.62524 * 180.02562 * 23 22 21 42 42 H 1.07991 * 120.42078 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7353 -0.1386 7 6 3.5054 3.2894 -1.4760 8 7 5.4664 2.8173 -0.0872 9 6 5.9161 4.2157 -0.0974 10 6 7.4443 4.2597 -0.1571 11 6 7.9056 5.6943 -0.1669 12 1 7.1812 6.4946 -0.1342 13 6 9.2523 5.9850 -0.2186 14 7 9.6549 7.2371 -0.2276 15 14 10.5052 4.6006 -0.2758 16 1 10.7819 4.2415 -1.6899 17 1 11.7630 5.0440 0.3775 18 1 9.9668 3.4159 0.4396 19 6 3.4123 3.5440 0.9889 20 6 2.6557 4.6766 0.7304 21 6 2.1374 5.3966 1.7901 22 7 2.3551 5.0170 3.0341 23 6 3.0689 3.9450 3.3172 24 6 3.6190 3.1755 2.3095 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9608 0.6972 -0.8354 29 1 3.9511 0.8690 0.9362 30 1 3.8143 4.3299 -1.5750 31 1 3.9308 2.7045 -2.2915 32 1 2.4177 3.2285 -1.5142 33 1 5.8844 2.2976 -0.8443 34 1 5.5037 4.7237 -0.9691 35 1 5.5735 4.7142 0.8095 36 1 7.8567 3.7517 0.7147 37 1 7.7870 3.7613 -1.0639 38 1 10.6024 7.4416 -0.2636 39 1 2.4742 4.9927 -0.2863 40 1 1.5472 6.2803 1.5971 41 1 3.2255 3.6650 4.3484 42 1 4.2030 2.2989 2.5477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589163453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:21 Heat of formation + Delta-G solvation = -44.684881 kcal Electronic energy + Delta-G solvation = -24041.334070 eV Core-core repulsion = 20600.814517 eV Total energy + Delta-G solvation = -3440.519553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.14173 -39.90794 -37.79490 -36.44181 -33.80714 -32.12745 -31.24199 -31.05997 -29.45423 -28.20481 -27.30095 -24.47102 -23.71078 -22.91293 -21.61259 -20.36011 -19.70116 -17.87053 -17.17581 -16.78634 -16.61528 -16.21725 -15.87374 -15.33778 -15.09865 -14.54834 -14.16333 -14.07569 -13.91256 -13.47824 -13.36434 -13.22162 -13.11155 -12.63430 -12.41538 -12.27435 -11.95828 -11.81676 -11.57841 -11.26549 -11.09484 -11.00025 -10.95178 -10.58450 -10.15005 -9.92287 -9.80605 -9.33719 -9.24285 -9.16150 -8.85308 -8.55547 -8.11888 -6.05614 -4.04425 1.42880 1.52424 2.05252 2.47180 3.29790 3.37878 3.42368 4.04025 4.34606 4.44161 4.44865 4.51628 4.69332 4.82804 4.84046 4.91611 5.03087 5.18666 5.26723 5.28516 5.30103 5.33560 5.42398 5.54091 5.63635 5.76562 5.85825 5.98607 6.01470 6.13173 6.22957 6.26954 6.31621 6.57319 6.71877 6.94963 7.02464 7.29812 7.46839 7.59021 7.63812 7.81731 8.21779 8.51291 8.98513 9.56123 11.07768 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.004378 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.536468 B = 6394.427381 C = 7212.406268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.491 6.491 5 C -0.102 4.102 6 C 0.162 3.838 7 C -0.195 4.195 8 N -0.677 5.677 9 C 0.074 3.926 10 C -0.009 4.009 11 C -0.521 4.521 12 H 0.070 0.930 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.004 4.004 20 C -0.144 4.144 21 C 0.092 3.908 22 N -0.491 5.491 23 C 0.090 3.910 24 C -0.157 4.157 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.342 0.658 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.025 0.975 37 H 0.009 0.991 38 H 0.263 0.737 39 H 0.131 0.869 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 -15.453 0.026 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.377 6.377 5 C -0.140 4.140 6 C 0.071 3.929 7 C -0.253 4.253 8 N -0.308 5.308 9 C -0.054 4.054 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.188 1.188 19 C -0.012 4.012 20 C -0.164 4.164 21 C -0.064 4.064 22 N -0.200 5.200 23 C -0.066 4.066 24 C -0.178 4.178 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.149 0.851 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.790 -14.596 1.389 23.054 hybrid contribution 0.821 -0.770 -1.729 2.063 sum -16.970 -15.366 -0.340 22.896 Atomic orbital electron populations 1.23228 0.76462 1.03494 1.02537 1.86504 1.23338 1.33706 1.84380 1.23688 0.92157 0.81358 0.72591 1.90689 1.67062 1.35798 1.44168 1.21424 0.87346 0.98457 1.06759 1.19492 0.89681 0.91035 0.92678 1.22788 1.03271 1.02765 0.96493 1.60776 1.02661 1.15938 1.51421 1.22015 0.98046 0.85259 1.00044 1.19554 0.90606 0.97934 0.96600 1.21026 0.92911 0.90971 1.51031 0.91162 1.25007 0.98489 0.95404 0.94481 1.69917 1.15600 1.17713 1.50923 0.86754 0.80855 0.83089 0.78450 1.20410 1.21417 1.18779 1.19775 0.93684 0.93969 0.93792 1.21985 0.98147 0.95501 1.00794 1.22609 0.97304 0.98686 0.87802 1.67584 1.14703 1.15115 1.22612 1.22614 0.93713 0.90871 0.99429 1.21912 1.00865 1.02021 0.92959 0.91958 0.88261 0.91956 0.87311 0.86477 0.90995 0.92355 0.90478 0.83970 0.95279 0.91559 0.95669 0.97280 0.92703 0.85103 0.83323 0.83295 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.65 10.57 -39.27 -0.41 -4.06 16 3 C 0.46 5.20 7.34 36.00 0.26 5.47 16 4 O -0.49 -6.63 11.70 -18.75 -0.22 -6.85 16 5 C -0.10 -1.04 4.92 -27.88 -0.14 -1.18 16 6 C 0.16 2.09 0.54 -132.75 -0.07 2.02 16 7 C -0.19 -2.44 6.78 37.16 0.25 -2.19 16 8 N -0.68 -10.12 6.06 -101.13 -0.61 -10.73 16 9 C 0.07 1.43 4.98 -3.83 -0.02 1.41 16 10 C -0.01 -0.21 4.25 -27.88 -0.12 -0.33 16 11 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 12 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 15 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 19 C 0.00 -0.05 1.61 -104.31 -0.17 -0.22 16 20 C -0.14 -2.14 8.16 -39.45 -0.32 -2.46 16 21 C 0.09 1.39 11.18 -17.55 -0.20 1.19 16 22 N -0.49 -7.86 10.36 -13.25 -0.14 -8.00 16 23 C 0.09 1.31 11.18 -17.55 -0.20 1.12 16 24 C -0.16 -2.23 9.27 -39.44 -0.37 -2.60 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.11 7.28 -51.93 -0.38 0.73 16 30 H 0.07 1.00 5.60 -51.93 -0.29 0.71 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.97 5.58 -51.93 -0.29 0.68 16 33 H 0.34 4.62 8.67 -39.29 -0.34 4.28 16 34 H 0.03 0.57 6.24 -51.93 -0.32 0.24 16 35 H 0.07 1.41 7.13 -51.92 -0.37 1.04 16 36 H 0.03 0.60 7.20 -51.93 -0.37 0.23 16 37 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.13 1.80 6.08 -52.49 -0.32 1.48 16 40 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.13 1.64 7.38 -52.49 -0.39 1.26 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -33.49 338.61 -6.63 -40.12 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.01 Total: 4.34 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -0.44 Total: -9.71 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.02 Total: -45.90 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.63 Total: -10.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.49 -6.63 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589163453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds