Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 117.00316 * 2 1 4 4 O 1.20827 * 119.99537 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00058 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47024 * 174.46762 * 5 3 2 7 7 C 1.53002 * 109.47077 * 297.88559 * 6 5 3 8 8 N 1.46899 * 109.47141 * 177.88465 * 6 5 3 9 9 C 1.46892 * 111.00162 * 185.05900 * 8 6 5 10 10 C 1.53003 * 109.47582 * 184.53393 * 9 8 6 11 11 C 1.50697 * 109.47159 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99781 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99939 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47233 * 90.00168 * 15 13 11 17 17 H 1.48505 * 109.46899 * 209.99925 * 15 13 11 18 18 H 1.48500 * 109.47299 * 330.00051 * 15 13 11 19 19 C 1.50706 * 109.47183 * 57.88369 * 6 5 3 20 20 C 1.38646 * 120.79057 * 234.42157 * 19 6 5 21 21 C 1.38199 * 119.16309 * 180.29543 * 20 19 6 22 22 N 1.31868 * 120.76429 * 359.97438 * 21 20 19 23 23 C 1.31870 * 121.72826 * 359.97438 * 22 21 20 24 24 C 1.38208 * 120.76369 * 0.02918 * 23 22 21 25 25 H 1.08997 * 109.46829 * 60.00221 * 1 2 3 26 26 H 1.08999 * 109.46993 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47335 * 300.00181 * 1 2 3 28 28 H 1.09000 * 109.47409 * 54.46948 * 5 3 2 29 29 H 1.09003 * 109.47269 * 294.46545 * 5 3 2 30 30 H 1.08997 * 109.47163 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.46949 * 300.00092 * 7 6 5 32 32 H 1.09002 * 109.47080 * 60.00092 * 7 6 5 33 33 H 1.00901 * 110.99948 * 61.10434 * 8 6 5 34 34 H 1.08999 * 109.47529 * 304.53685 * 9 8 6 35 35 H 1.09011 * 109.47094 * 64.53488 * 9 8 6 36 36 H 1.09004 * 109.46789 * 299.99924 * 10 9 8 37 37 H 1.08997 * 109.47021 * 60.00062 * 10 9 8 38 38 H 0.96996 * 119.99746 * 179.97438 * 14 13 11 39 39 H 1.08001 * 120.41711 * 0.24979 * 20 19 6 40 40 H 1.08002 * 119.61817 * 179.97438 * 21 20 19 41 41 H 1.07994 * 119.62524 * 180.02562 * 23 22 21 42 42 H 1.07991 * 120.42078 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0006 2.7353 -0.1386 7 6 3.5054 3.2894 -1.4760 8 7 5.4664 2.8173 -0.0872 9 6 5.9161 4.2157 -0.0974 10 6 7.4443 4.2597 -0.1571 11 6 7.9056 5.6943 -0.1669 12 1 7.1812 6.4946 -0.1342 13 6 9.2523 5.9850 -0.2186 14 7 9.6549 7.2371 -0.2276 15 14 10.5052 4.6006 -0.2758 16 1 10.7819 4.2415 -1.6899 17 1 11.7630 5.0440 0.3775 18 1 9.9668 3.4159 0.4396 19 6 3.4123 3.5440 0.9889 20 6 2.6557 4.6766 0.7304 21 6 2.1374 5.3966 1.7901 22 7 2.3551 5.0170 3.0341 23 6 3.0689 3.9450 3.3172 24 6 3.6190 3.1755 2.3095 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.9608 0.6972 -0.8354 29 1 3.9511 0.8690 0.9362 30 1 3.8143 4.3299 -1.5750 31 1 3.9308 2.7045 -2.2915 32 1 2.4177 3.2285 -1.5142 33 1 5.8844 2.2976 -0.8443 34 1 5.5037 4.7237 -0.9691 35 1 5.5735 4.7142 0.8095 36 1 7.8567 3.7517 0.7147 37 1 7.7870 3.7613 -1.0639 38 1 10.6024 7.4416 -0.2636 39 1 2.4742 4.9927 -0.2863 40 1 1.5472 6.2803 1.5971 41 1 3.2255 3.6650 4.3484 42 1 4.2030 2.2989 2.5477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589163453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -67.809376 kcal Electronic energy + Delta-G solvation = -24042.336824 eV Core-core repulsion = 20600.814517 eV Total energy + Delta-G solvation = -3441.522307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.09594 -40.89180 -38.89300 -37.37250 -35.57706 -33.89889 -32.33860 -32.18922 -30.84613 -29.35352 -28.05662 -26.08781 -24.95453 -24.04094 -22.77987 -21.91186 -20.75231 -19.05199 -18.61059 -18.00340 -17.59058 -17.19254 -16.93866 -16.67298 -16.21882 -16.13700 -15.67797 -15.21339 -14.94765 -14.66523 -14.52934 -14.45963 -14.26483 -14.11932 -13.72036 -13.38204 -12.96976 -12.89515 -12.82075 -12.77265 -12.37612 -12.10431 -11.92613 -11.77956 -11.73177 -11.71882 -11.44004 -11.37025 -10.75939 -10.39614 -10.35650 -9.97718 -9.40246 -8.28656 -6.33939 0.30757 0.39973 1.22195 1.38315 1.41676 1.54154 1.71136 2.38307 2.91344 3.07313 3.24553 3.44029 3.62667 3.64013 3.81773 4.13381 4.17542 4.28459 4.31340 4.32120 4.33226 4.40931 4.49170 4.57165 4.63699 4.65446 4.71293 4.77782 4.85127 4.92803 4.94978 5.10995 5.17881 5.29805 5.45292 5.45852 5.52575 5.65432 5.85480 6.01479 6.25325 6.51066 6.75153 6.77659 7.08480 7.30947 8.88464 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.004378 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.536468 B = 6394.427381 C = 7212.406268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.519 6.519 5 C -0.097 4.097 6 C 0.165 3.835 7 C -0.190 4.190 8 N -0.667 5.667 9 C 0.094 3.906 10 C -0.003 4.003 11 C -0.534 4.534 12 H 0.024 0.976 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.957 3.043 16 H -0.264 1.264 17 H -0.288 1.288 18 H -0.241 1.241 19 C -0.012 4.012 20 C -0.158 4.158 21 C 0.077 3.923 22 N -0.515 5.515 23 C 0.079 3.921 24 C -0.164 4.164 25 H 0.061 0.939 26 H 0.130 0.870 27 H 0.055 0.945 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.356 0.644 34 H 0.022 0.978 35 H 0.041 0.959 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.059 -19.018 -0.362 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.407 6.407 5 C -0.135 4.135 6 C 0.074 3.926 7 C -0.248 4.248 8 N -0.299 5.299 9 C -0.035 4.035 10 C -0.041 4.041 11 C -0.572 4.572 12 H 0.042 0.958 13 C -0.194 4.194 14 N -0.595 5.595 15 Si 0.780 3.220 16 H -0.189 1.189 17 H -0.214 1.214 18 H -0.164 1.164 19 C -0.020 4.020 20 C -0.178 4.178 21 C -0.079 4.079 22 N -0.225 5.225 23 C -0.077 4.077 24 C -0.184 4.184 25 H 0.080 0.920 26 H 0.148 0.852 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.176 0.824 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.152 0.848 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.472 -18.197 0.991 25.246 hybrid contribution 0.591 0.400 -1.600 1.752 sum -16.881 -17.797 -0.610 24.537 Atomic orbital electron populations 1.23468 0.75121 1.05435 1.02184 1.86492 1.24643 1.32866 1.83961 1.23841 0.92525 0.81304 0.71836 1.90695 1.67733 1.36742 1.45566 1.21398 0.86854 0.96457 1.08774 1.19524 0.88040 0.92887 0.92189 1.22725 1.03293 1.01828 0.96969 1.60591 1.04158 1.12904 1.52209 1.21540 0.95529 0.87832 0.98603 1.19437 0.93138 0.94407 0.97116 1.21390 0.92445 0.92764 1.50616 0.95783 1.26069 1.01056 0.98346 0.93931 1.70088 1.16301 1.20532 1.52566 0.85556 0.77328 0.79752 0.79367 1.18854 1.21408 1.16448 1.20057 0.93421 0.93909 0.94659 1.22138 0.98688 0.96024 1.00942 1.22944 0.97712 0.99425 0.87843 1.67608 1.15733 1.16107 1.23051 1.23092 0.93251 0.90520 1.00880 1.22175 1.00863 1.02588 0.92757 0.92033 0.85207 0.92653 0.84389 0.85096 0.93021 0.90448 0.90594 0.82378 0.96001 0.93996 0.95625 0.95578 0.92513 0.84832 0.81830 0.80960 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -6.37 10.57 -51.45 -0.54 -6.91 16 3 C 0.46 9.40 7.34 71.23 0.52 9.92 16 4 O -0.52 -13.43 11.70 21.96 0.26 -13.17 16 5 C -0.10 -1.67 4.92 29.85 0.15 -1.52 16 6 C 0.16 3.91 0.54 2.79 0.00 3.91 16 7 C -0.19 -4.47 6.78 71.98 0.49 -3.99 16 8 N -0.67 -18.22 6.06 -473.88 -2.87 -21.10 16 9 C 0.09 3.57 4.98 86.31 0.43 4.00 16 10 C 0.00 -0.14 4.25 29.85 0.13 -0.02 16 11 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 12 H 0.02 1.56 7.99 -2.91 -0.02 1.53 16 13 C 0.00 0.14 5.47 84.65 0.46 0.61 16 14 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 15 Si 0.96 43.74 27.47 68.60 1.88 45.62 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 19 C -0.01 -0.33 1.61 -19.67 -0.03 -0.37 16 20 C -0.16 -4.76 8.16 22.36 0.18 -4.58 16 21 C 0.08 2.36 11.18 84.68 0.95 3.30 16 22 N -0.52 -16.66 10.36 -195.85 -2.03 -18.69 16 23 C 0.08 2.25 11.18 84.68 0.95 3.20 16 24 C -0.16 -4.45 9.27 22.36 0.21 -4.25 16 25 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 26 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 28 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.13 1.95 7.28 -2.39 -0.02 1.94 16 30 H 0.05 1.43 5.60 -2.39 -0.01 1.41 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.84 5.58 -2.39 -0.01 1.83 16 33 H 0.36 8.26 8.67 -89.69 -0.78 7.48 16 34 H 0.02 0.86 6.24 -2.39 -0.01 0.85 16 35 H 0.04 1.80 7.13 -2.38 -0.02 1.78 16 36 H 0.03 1.16 7.20 -2.39 -0.02 1.15 16 37 H 0.03 1.10 7.57 -2.39 -0.02 1.08 16 38 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.13 3.81 6.08 -2.91 -0.02 3.80 16 40 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.17 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.15 3.40 7.38 -2.92 -0.02 3.38 16 Total: -1.00 -74.28 338.61 3.07 -71.21 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.20 Total: 22.15 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.88 Total: -18.87 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -4.60 Total: -100.03 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.29 Total: -20.08 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -74.28 3.07 -71.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589163453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.403 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds