Wall clock time and date at job start Tue Mar 31 2020 07:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 N 1.46503 * 109.47145 * 120.00163 * 2 1 3 5 5 C 1.35539 * 125.67271 * 305.28677 * 4 2 1 6 6 C 1.35459 * 108.86405 * 180.30396 * 5 4 2 7 7 C 1.39828 * 107.86805 * 359.73511 * 6 5 4 8 8 C 1.37647 * 125.68092 * 125.13181 * 4 2 1 9 9 C 1.46677 * 126.23067 * 359.96330 * 8 4 2 10 10 O 1.21693 * 120.00076 * 8.01808 * 9 8 4 11 11 N 1.34779 * 120.00048 * 188.01527 * 9 8 4 12 12 C 1.47421 * 125.64553 * 358.85686 * 11 9 8 13 13 C 1.54913 * 104.82943 * 155.90207 * 12 11 9 14 14 C 1.55152 * 101.58084 * 37.01299 * 13 12 11 15 15 O 1.42900 * 110.72484 * 82.86132 * 14 13 12 16 16 C 1.50704 * 110.71977 * 205.95509 * 14 13 12 17 17 H 1.08006 * 120.00047 * 116.15063 * 16 14 13 18 18 C 1.37878 * 119.99953 * 296.15652 * 16 14 13 19 19 N 1.31512 * 119.99731 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47077 * 59.99571 * 20 18 16 22 22 H 1.48499 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46990 * 299.99930 * 20 18 16 24 24 C 1.47020 * 125.65071 * 178.89202 * 11 9 8 25 25 H 1.08996 * 109.47353 * 299.99808 * 1 2 3 26 26 H 1.09001 * 109.47102 * 60.00145 * 1 2 3 27 27 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47353 * 240.00192 * 2 1 3 29 29 H 1.09001 * 109.46997 * 299.99919 * 3 2 1 30 30 H 1.09007 * 109.47095 * 59.99464 * 3 2 1 31 31 H 1.08995 * 109.47514 * 179.97438 * 3 2 1 32 32 H 1.07993 * 125.56927 * 0.07067 * 5 4 2 33 33 H 1.07995 * 126.06253 * 179.69199 * 6 5 4 34 34 H 1.08004 * 126.45918 * 179.97438 * 7 6 5 35 35 H 1.09003 * 110.36972 * 37.07029 * 12 11 9 36 36 H 1.09002 * 110.36885 * 274.74120 * 12 11 9 37 37 H 1.08995 * 111.00715 * 278.93431 * 13 12 11 38 38 H 1.09004 * 111.03281 * 155.10017 * 13 12 11 39 39 H 0.96700 * 114.00104 * 61.45139 * 15 14 13 40 40 H 0.97008 * 119.99966 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.88029 * 61.61084 * 24 11 9 42 42 H 1.09000 * 109.88682 * 300.45011 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6821 -0.3909 2.4745 6 6 2.3329 -1.2371 3.3084 7 6 3.1017 -2.1041 2.5257 8 6 2.8926 -1.7538 1.2087 9 6 3.4966 -2.3933 0.0351 10 8 3.3538 -1.8995 -1.0680 11 7 4.2100 -3.5279 0.1782 12 6 4.4809 -4.2173 1.4529 13 6 4.7537 -5.6899 1.0570 14 6 5.5254 -5.5158 -0.2777 15 8 6.9099 -5.2611 -0.0318 16 6 5.3562 -6.7303 -1.1538 17 1 4.8514 -6.6441 -2.1048 18 6 5.8456 -7.9515 -0.7413 19 7 6.4606 -8.0563 0.4165 20 14 5.6353 -9.4571 -1.8269 21 1 6.3052 -9.2241 -3.1315 22 1 6.2439 -10.6365 -1.1608 23 1 4.1887 -9.7075 -2.0510 24 6 4.8473 -4.2825 -0.9107 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.0086 0.3965 2.7788 33 1 2.2698 -1.2409 4.3865 34 1 3.7393 -2.8982 2.8851 35 1 3.6131 -4.1556 2.1095 36 1 5.3566 -3.7866 1.9385 37 1 3.8209 -6.2318 0.9011 38 1 5.3721 -6.1877 1.8039 39 1 7.3644 -5.9757 0.4350 40 1 6.8046 -8.9156 0.7069 41 1 5.5945 -3.6612 -1.4044 42 1 4.0939 -4.6023 -1.6306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592847072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:54 Heat of formation + Delta-G solvation = -26.422502 kcal Electronic energy + Delta-G solvation = -24143.033981 eV Core-core repulsion = 20703.306343 eV Total energy + Delta-G solvation = -3439.727637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37978 -39.06452 -37.13405 -35.51230 -34.27569 -32.18894 -30.24803 -29.80809 -29.18635 -27.84158 -27.47535 -25.15401 -23.33251 -22.30689 -20.95771 -20.47056 -19.42304 -18.50006 -17.23075 -16.92529 -15.76991 -15.47294 -15.09758 -14.85771 -14.67611 -14.48832 -14.17312 -13.99815 -13.51822 -13.01369 -12.84593 -12.66476 -12.42661 -12.37823 -12.18095 -12.04867 -11.99658 -11.59844 -11.43238 -11.35339 -11.15122 -11.08096 -10.78730 -10.51370 -10.45658 -10.11319 -9.47847 -9.35105 -8.66634 -8.62125 -8.21564 -8.19907 -7.89324 -6.29129 -4.36183 1.73215 2.74884 2.90284 3.22292 3.26965 3.30435 3.64761 3.72641 4.27037 4.54745 4.81081 4.85809 4.98385 5.05333 5.08588 5.29079 5.36120 5.47569 5.48651 5.57229 5.60305 5.73447 5.76439 5.86176 5.96319 5.97691 6.04101 6.15828 6.23547 6.39564 6.44459 6.66655 6.86014 6.92178 7.03174 7.16712 7.29795 7.33781 7.37823 7.73100 8.01123 8.07239 8.58891 8.65946 9.31001 9.41546 10.78832 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.003928 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.755353 B = 7126.904049 C = 7497.098562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.105 3.895 3 C -0.156 4.156 4 N -0.403 5.403 5 C 0.008 3.992 6 C -0.211 4.211 7 C -0.157 4.157 8 C -0.037 4.037 9 C 0.593 3.407 10 O -0.567 6.567 11 N -0.592 5.592 12 C 0.082 3.918 13 C -0.137 4.137 14 C 0.248 3.752 15 O -0.585 6.585 16 C -0.535 4.535 17 H 0.064 0.936 18 C 0.074 3.926 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.125 3.875 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.384 0.616 40 H 0.269 0.731 41 H 0.063 0.937 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 12.782 5.574 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 C -0.214 4.214 4 N -0.077 5.077 5 C -0.127 4.127 6 C -0.236 4.236 7 C -0.183 4.183 8 C -0.150 4.150 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.322 5.322 12 C -0.040 4.040 13 C -0.176 4.176 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.004 3.996 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.511 13.690 4.443 17.251 hybrid contribution -0.014 -1.358 -0.036 1.358 sum -9.524 12.332 4.408 16.193 Atomic orbital electron populations 1.22145 0.93705 1.03046 1.02760 1.21921 0.94975 0.94275 0.88490 1.22113 1.02352 0.94415 1.02527 1.44135 1.33261 1.23953 1.06334 1.21807 1.04728 1.03346 0.82830 1.20816 1.03709 0.99977 0.99065 1.22086 1.03232 1.01992 0.90991 1.20091 1.03446 0.96500 0.95001 1.16602 0.78570 0.79786 0.86736 1.90670 1.62958 1.64236 1.27079 1.48235 1.50208 1.23033 1.10742 1.23014 1.00063 0.95060 0.85882 1.23352 1.01677 0.91556 1.01032 1.19446 0.79677 0.89528 0.90592 1.86123 1.23707 1.48287 1.81343 1.21478 1.38156 0.92561 1.05169 0.91817 1.24966 0.93898 0.99037 0.94991 1.69634 1.38066 1.26146 1.19747 0.86469 0.78571 0.81330 0.80575 1.19994 1.21094 1.20078 1.22108 0.95824 0.92852 0.88822 0.92127 0.90639 0.91791 0.85166 0.90752 0.92278 0.91751 0.82183 0.84366 0.82369 0.90336 0.91509 0.91383 0.89364 0.76533 0.92105 0.91889 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.16 37.16 0.34 -1.20 16 2 C 0.10 1.32 3.44 -67.93 -0.23 1.08 16 3 C -0.16 -1.60 9.30 37.16 0.35 -1.26 16 4 N -0.40 -5.78 2.64 -105.81 -0.28 -6.06 16 5 C 0.01 0.09 10.33 -16.91 -0.17 -0.08 16 6 C -0.21 -2.70 10.81 -39.98 -0.43 -3.13 16 7 C -0.16 -2.38 9.16 -39.12 -0.36 -2.74 16 8 C -0.04 -0.63 6.84 -81.98 -0.56 -1.19 16 9 C 0.59 11.93 7.81 -12.85 -0.10 11.83 16 10 O -0.57 -12.43 14.74 5.20 0.08 -12.35 16 11 N -0.59 -12.13 3.33 -172.06 -0.57 -12.70 16 12 C 0.08 1.51 5.24 -2.53 -0.01 1.50 16 13 C -0.14 -2.94 5.57 -24.58 -0.14 -3.08 16 14 C 0.25 5.96 0.85 -89.94 -0.08 5.88 16 15 O -0.59 -14.65 13.06 -35.23 -0.46 -15.11 16 16 C -0.54 -13.94 8.22 -34.44 -0.28 -14.22 16 17 H 0.06 1.66 7.56 -52.48 -0.40 1.26 16 18 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 19 N -0.90 -22.79 10.69 55.43 0.59 -22.20 16 20 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.13 2.85 6.22 -3.07 -0.02 2.83 16 25 H 0.06 0.50 7.70 -51.93 -0.40 0.10 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.13 2.03 5.43 -51.93 -0.28 1.75 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.52 8.02 -51.92 -0.42 0.10 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 1.39 7.90 -52.49 -0.41 0.98 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.16 2.25 4.71 -52.48 -0.25 2.01 16 35 H 0.08 1.27 5.30 -51.93 -0.28 1.00 16 36 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 37 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 38 H 0.09 1.94 7.64 -51.93 -0.40 1.54 16 39 H 0.38 9.59 7.28 45.56 0.33 9.92 16 40 H 0.27 6.58 8.31 -40.82 -0.34 6.25 16 41 H 0.06 1.48 8.07 -51.93 -0.42 1.07 16 42 H 0.07 1.68 7.66 -51.93 -0.40 1.29 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -28.73 335.79 -7.80 -36.53 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.40 Total: 13.70 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.80 Total: -1.99 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.26 Total: -40.97 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.38 Total: -27.46 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.73 -7.80 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.107 kcal (2) G-P(sol) polarization free energy of solvation -28.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds