Wall clock time and date at job start Tue Mar 31 2020 07:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47154 * 2 1 4 4 N 1.46503 * 109.47145 * 120.00163 * 2 1 3 5 5 C 1.35539 * 125.67271 * 305.28677 * 4 2 1 6 6 C 1.35459 * 108.86405 * 180.30396 * 5 4 2 7 7 C 1.39828 * 107.86805 * 359.73511 * 6 5 4 8 8 C 1.37647 * 125.68092 * 125.13181 * 4 2 1 9 9 C 1.46677 * 126.23067 * 359.96330 * 8 4 2 10 10 O 1.21693 * 120.00076 * 8.01808 * 9 8 4 11 11 N 1.34779 * 120.00048 * 188.01527 * 9 8 4 12 12 C 1.47421 * 125.64553 * 358.85686 * 11 9 8 13 13 C 1.54913 * 104.82943 * 155.90207 * 12 11 9 14 14 C 1.55152 * 101.58084 * 37.01299 * 13 12 11 15 15 O 1.42900 * 110.72484 * 82.86132 * 14 13 12 16 16 C 1.50704 * 110.71977 * 205.95509 * 14 13 12 17 17 H 1.08006 * 120.00047 * 116.15063 * 16 14 13 18 18 C 1.37878 * 119.99953 * 296.15652 * 16 14 13 19 19 N 1.31512 * 119.99731 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00039 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47077 * 59.99571 * 20 18 16 22 22 H 1.48499 * 109.47162 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46990 * 299.99930 * 20 18 16 24 24 C 1.47020 * 125.65071 * 178.89202 * 11 9 8 25 25 H 1.08996 * 109.47353 * 299.99808 * 1 2 3 26 26 H 1.09001 * 109.47102 * 60.00145 * 1 2 3 27 27 H 1.09005 * 109.47014 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47353 * 240.00192 * 2 1 3 29 29 H 1.09001 * 109.46997 * 299.99919 * 3 2 1 30 30 H 1.09007 * 109.47095 * 59.99464 * 3 2 1 31 31 H 1.08995 * 109.47514 * 179.97438 * 3 2 1 32 32 H 1.07993 * 125.56927 * 0.07067 * 5 4 2 33 33 H 1.07995 * 126.06253 * 179.69199 * 6 5 4 34 34 H 1.08004 * 126.45918 * 179.97438 * 7 6 5 35 35 H 1.09003 * 110.36972 * 37.07029 * 12 11 9 36 36 H 1.09002 * 110.36885 * 274.74120 * 12 11 9 37 37 H 1.08995 * 111.00715 * 278.93431 * 13 12 11 38 38 H 1.09004 * 111.03281 * 155.10017 * 13 12 11 39 39 H 0.96700 * 114.00104 * 61.45139 * 15 14 13 40 40 H 0.97008 * 119.99966 * 179.97438 * 19 18 16 41 41 H 1.09002 * 109.88029 * 61.61084 * 24 11 9 42 42 H 1.09000 * 109.88682 * 300.45011 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6821 -0.3909 2.4745 6 6 2.3329 -1.2371 3.3084 7 6 3.1017 -2.1041 2.5257 8 6 2.8926 -1.7538 1.2087 9 6 3.4966 -2.3933 0.0351 10 8 3.3538 -1.8995 -1.0680 11 7 4.2100 -3.5279 0.1782 12 6 4.4809 -4.2173 1.4529 13 6 4.7537 -5.6899 1.0570 14 6 5.5254 -5.5158 -0.2777 15 8 6.9099 -5.2611 -0.0318 16 6 5.3562 -6.7303 -1.1538 17 1 4.8514 -6.6441 -2.1048 18 6 5.8456 -7.9515 -0.7413 19 7 6.4606 -8.0563 0.4165 20 14 5.6353 -9.4571 -1.8269 21 1 6.3052 -9.2241 -3.1315 22 1 6.2439 -10.6365 -1.1608 23 1 4.1887 -9.7075 -2.0510 24 6 4.8473 -4.2825 -0.9107 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.0086 0.3965 2.7788 33 1 2.2698 -1.2409 4.3865 34 1 3.7393 -2.8982 2.8851 35 1 3.6131 -4.1556 2.1095 36 1 5.3566 -3.7866 1.9385 37 1 3.8209 -6.2318 0.9011 38 1 5.3721 -6.1877 1.8039 39 1 7.3644 -5.9757 0.4350 40 1 6.8046 -8.9156 0.7069 41 1 5.5945 -3.6612 -1.4044 42 1 4.0939 -4.6023 -1.6306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592847072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:53 Heat of formation + Delta-G solvation = -44.653727 kcal Electronic energy + Delta-G solvation = -24143.824546 eV Core-core repulsion = 20703.306343 eV Total energy + Delta-G solvation = -3440.518203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51167 -40.65191 -38.84387 -36.63636 -35.89800 -34.18605 -31.86276 -30.89916 -30.62884 -29.42322 -28.24822 -26.96483 -24.85395 -23.33226 -22.41316 -21.78384 -21.12065 -19.69494 -19.14534 -18.22860 -17.23866 -17.01689 -16.89436 -16.31333 -15.97501 -15.75834 -15.65048 -15.09808 -14.99562 -14.70384 -14.02838 -13.90319 -13.68355 -13.58127 -13.51448 -13.30693 -13.21782 -13.10596 -13.03928 -12.84927 -12.61513 -12.32036 -12.29444 -12.18698 -12.03024 -11.91887 -11.30299 -10.93131 -10.62157 -10.14049 -9.79010 -9.63603 -9.12023 -8.25012 -6.39112 0.48412 1.43175 1.44675 1.51402 1.58324 1.86719 2.25807 2.33264 2.40858 3.00362 3.50619 3.66639 3.85190 3.95487 3.96420 4.15608 4.19550 4.22921 4.33439 4.43895 4.48156 4.55599 4.60681 4.63253 4.69148 4.74926 4.87023 4.94063 5.02876 5.13422 5.17445 5.21088 5.23518 5.33121 5.44464 5.50135 5.75343 5.89118 6.04322 6.06756 6.40288 6.51577 6.63434 7.04661 7.30944 7.41978 8.81470 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028056 B = 0.003928 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.755353 B = 7126.904049 C = 7497.098562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.097 3.903 3 C -0.149 4.149 4 N -0.406 5.406 5 C 0.030 3.970 6 C -0.218 4.218 7 C -0.153 4.153 8 C -0.084 4.084 9 C 0.586 3.414 10 O -0.598 6.598 11 N -0.599 5.599 12 C 0.094 3.906 13 C -0.126 4.126 14 C 0.237 3.763 15 O -0.593 6.593 16 C -0.566 4.566 17 H 0.051 0.949 18 C 0.040 3.960 19 N -0.905 5.905 20 Si 0.959 3.041 21 H -0.278 1.278 22 H -0.276 1.276 23 H -0.274 1.274 24 C 0.133 3.867 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.204 0.796 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.382 0.618 40 H 0.273 0.727 41 H 0.044 0.956 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.987 14.054 7.660 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.004 4.004 3 C -0.206 4.206 4 N -0.080 5.080 5 C -0.106 4.106 6 C -0.241 4.241 7 C -0.180 4.180 8 C -0.197 4.197 9 C 0.379 3.621 10 O -0.482 6.482 11 N -0.329 5.329 12 C -0.027 4.027 13 C -0.165 4.165 14 C 0.197 3.803 15 O -0.402 6.402 16 C -0.604 4.604 17 H 0.070 0.930 18 C -0.162 4.162 19 N -0.544 5.544 20 Si 0.785 3.215 21 H -0.203 1.203 22 H -0.201 1.201 23 H -0.199 1.199 24 C 0.010 3.990 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.221 0.779 33 H 0.187 0.813 34 H 0.180 0.820 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.257 14.965 6.542 19.836 hybrid contribution 0.508 -1.678 -0.668 1.876 sum -10.749 13.288 5.874 18.073 Atomic orbital electron populations 1.22108 0.91189 1.02583 1.04903 1.22007 0.96886 0.94821 0.86725 1.22077 1.00745 0.93152 1.04655 1.44371 1.32656 1.23258 1.07717 1.22571 1.03480 1.03070 0.81445 1.21201 1.03047 0.99282 1.00563 1.22273 1.02986 1.02177 0.90526 1.19773 1.06531 0.99107 0.94251 1.17168 0.77971 0.79313 0.87620 1.90647 1.63973 1.64986 1.28636 1.48250 1.50634 1.23526 1.10533 1.23018 1.01644 0.92647 0.85387 1.23135 1.00506 0.93493 0.99387 1.19561 0.79436 0.89377 0.91891 1.86109 1.24483 1.48203 1.81422 1.21688 1.39255 0.94013 1.05413 0.93037 1.25564 0.93487 1.01014 0.96136 1.69687 1.37662 1.26793 1.20229 0.85597 0.78443 0.78589 0.78886 1.20347 1.20088 1.19881 1.21822 0.95128 0.92566 0.89486 0.89585 0.88884 0.93513 0.89095 0.88945 0.89808 0.94195 0.77924 0.81350 0.82038 0.87499 0.90707 0.92343 0.89888 0.76778 0.91751 0.93712 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.16 71.98 0.66 -1.89 16 2 C 0.10 2.32 3.44 44.99 0.15 2.48 16 3 C -0.15 -2.75 9.30 71.98 0.67 -2.08 16 4 N -0.41 -10.95 2.64 -488.67 -1.29 -12.24 16 5 C 0.03 0.60 10.33 83.48 0.86 1.47 16 6 C -0.22 -4.71 10.81 22.01 0.24 -4.47 16 7 C -0.15 -4.32 9.16 22.57 0.21 -4.12 16 8 C -0.08 -2.83 6.84 40.35 0.28 -2.56 16 9 C 0.59 24.42 7.81 86.45 0.67 25.09 16 10 O -0.60 -27.71 14.74 -4.33 -0.06 -27.78 16 11 N -0.60 -25.34 3.33 -816.49 -2.72 -28.06 16 12 C 0.09 3.47 5.24 86.86 0.45 3.93 16 13 C -0.13 -5.50 5.57 31.99 0.18 -5.32 16 14 C 0.24 11.79 0.85 -10.35 -0.01 11.78 16 15 O -0.59 -30.55 13.06 -148.98 -1.95 -32.50 16 16 C -0.57 -30.35 8.22 25.60 0.21 -30.14 16 17 H 0.05 2.81 7.56 -2.91 -0.02 2.78 16 18 C 0.04 2.04 5.29 84.66 0.45 2.49 16 19 N -0.90 -46.09 10.69 21.45 0.23 -45.86 16 20 Si 0.96 41.50 29.54 68.60 2.03 43.52 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 C 0.13 6.36 6.22 86.73 0.54 6.90 16 25 H 0.09 1.02 7.70 -2.39 -0.02 1.00 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.09 2.95 5.43 -2.39 -0.01 2.93 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.13 8.02 -2.38 -0.02 1.11 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.20 2.25 7.90 -2.91 -0.02 2.23 16 33 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.16 4.28 4.71 -2.91 -0.01 4.27 16 35 H 0.11 3.33 5.30 -2.39 -0.01 3.32 16 36 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 37 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 38 H 0.08 3.67 7.64 -2.38 -0.02 3.65 16 39 H 0.38 19.53 7.28 -74.06 -0.54 18.99 16 40 H 0.27 13.22 8.31 -92.70 -0.77 12.45 16 41 H 0.04 2.25 8.07 -2.39 -0.02 2.23 16 42 H 0.06 3.01 7.66 -2.39 -0.02 2.99 16 Total: -1.00 -64.66 335.79 2.30 -62.36 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.49 Total: 36.98 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.56 Total: 3.56 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -3.77 Total: -86.16 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -2.01 Total: -60.28 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -64.66 2.30 -62.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592847072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.709 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds