Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 H 1.08997 * 109.47033 * 304.99249 * 3 2 1 5 5 C 1.50705 * 109.46975 * 184.99479 * 3 2 1 6 6 H 1.07999 * 120.00022 * 239.99543 * 5 3 2 7 7 C 1.37876 * 119.99710 * 59.99684 * 5 3 2 8 8 N 1.31519 * 120.00393 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46937 * 120.00098 * 9 7 5 12 12 H 1.48502 * 109.47522 * 240.00101 * 9 7 5 13 13 N 1.46496 * 109.47322 * 64.99652 * 3 2 1 14 14 C 1.34776 * 120.00068 * 274.99588 * 13 3 2 15 15 O 1.21588 * 120.00079 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99985 * 180.02562 * 14 13 3 17 17 C 1.39941 * 119.99700 * 174.38388 * 16 14 13 18 18 C 1.38923 * 120.04507 * 335.16777 * 17 16 14 19 19 C 1.38122 * 120.04509 * 179.79368 * 18 17 16 20 20 C 1.38216 * 120.12207 * 0.46257 * 19 18 17 21 21 C 1.38761 * 120.07989 * 359.79388 * 20 19 18 22 22 O 1.35904 * 120.01798 * 179.97438 * 21 20 19 23 23 C 1.42901 * 117.00036 * 359.97438 * 22 21 20 24 24 C 1.38625 * 119.96289 * 359.97093 * 21 20 19 25 25 C 1.50706 * 120.06534 * 180.02562 * 24 21 20 26 26 H 1.09002 * 109.47056 * 60.00961 * 1 2 3 27 27 H 1.08997 * 109.48080 * 300.00507 * 1 2 3 28 28 H 1.09009 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46597 * 119.99310 * 2 1 3 30 30 H 1.09001 * 109.47379 * 239.99679 * 2 1 3 31 31 H 0.96998 * 120.00177 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99811 * 95.00269 * 13 3 2 33 33 H 0.96993 * 120.00262 * 354.38277 * 16 14 13 34 34 H 1.08008 * 119.97900 * 0.02620 * 18 17 16 35 35 H 1.08000 * 119.94322 * 180.23661 * 19 18 17 36 36 H 1.07999 * 119.96031 * 179.76865 * 20 19 18 37 37 H 1.08995 * 109.47297 * 59.99478 * 23 22 21 38 38 H 1.09001 * 109.47112 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46644 * 299.99614 * 23 22 21 40 40 H 1.08996 * 109.46959 * 269.98394 * 25 24 21 41 41 H 1.08999 * 109.46365 * 29.97845 * 25 24 21 42 42 H 1.08993 * 109.46972 * 149.98083 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8813 -1.3815 10 1 6.5986 1.5464 -0.1939 11 1 6.4971 -0.5175 -1.4625 12 1 6.3991 1.6167 -2.6100 13 7 1.6522 2.0975 1.2517 14 6 0.4349 2.6645 1.3668 15 8 -0.3417 2.6319 0.4318 16 7 0.0785 3.2675 2.5182 17 6 -1.1363 3.9574 2.5998 18 6 -1.7233 4.4705 1.4500 19 6 -2.9245 5.1478 1.5299 20 6 -3.5406 5.3251 2.7544 21 6 -2.9561 4.8193 3.9068 22 8 -3.5628 4.9949 5.1102 23 6 -4.7999 5.7102 5.1149 24 6 -1.7531 4.1349 3.8299 25 6 -1.1166 3.5841 5.0800 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8932 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1233 1.9977 33 1 0.6639 3.2233 3.2903 34 1 -1.2421 4.3366 0.4924 35 1 -3.3813 5.5427 0.6345 36 1 -4.4779 5.8583 2.8144 37 1 -5.5259 5.1845 4.4947 38 1 -5.1758 5.7793 6.1357 39 1 -4.6413 6.7128 4.7178 40 1 -0.4525 4.3338 5.5101 41 1 -1.8932 3.3299 5.8013 42 1 -0.5438 2.6904 4.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599860956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -43.134029 kcal Electronic energy + Delta-G solvation = -23540.680065 eV Core-core repulsion = 20100.227761 eV Total energy + Delta-G solvation = -3440.452303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.60980 -39.48633 -37.44898 -35.26470 -34.24136 -32.48435 -32.23590 -30.84739 -28.87001 -27.71959 -26.95923 -26.34215 -23.27307 -22.36143 -21.40769 -20.46842 -19.55041 -18.29652 -18.12629 -16.45692 -15.99776 -15.85408 -15.76077 -15.51583 -15.02453 -14.59429 -14.18422 -13.83546 -13.53626 -13.28378 -13.24458 -12.67344 -12.51165 -12.40549 -12.13897 -12.03986 -11.59694 -11.48217 -11.27341 -11.19952 -10.95975 -10.86348 -10.83927 -10.30637 -10.19905 -10.03221 -9.59200 -9.29504 -9.03648 -8.52748 -8.14157 -7.93709 -7.61819 -6.14396 -4.23680 1.43490 1.62757 2.95002 3.22580 3.30639 3.32903 3.46792 3.65408 4.09603 4.30983 4.80218 4.87541 4.96477 4.99139 5.02344 5.17511 5.23264 5.27738 5.49188 5.57486 5.66982 5.68527 5.84248 6.21005 6.36899 6.40896 6.45076 6.48133 6.52499 6.66447 6.77168 7.02349 7.08856 7.16826 7.34822 7.36821 7.42669 7.46394 7.63277 7.85154 7.96410 8.17040 8.71092 8.81929 9.21825 9.44603 10.90997 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.003312 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.816283 B = 8452.114990 C = 8655.104578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.717 5.717 14 C 0.692 3.308 15 O -0.571 6.571 16 N -0.690 5.690 17 C 0.222 3.778 18 C -0.163 4.163 19 C -0.066 4.066 20 C -0.236 4.236 21 C 0.142 3.858 22 O -0.317 6.317 23 C 0.030 3.970 24 C -0.164 4.164 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.403 0.597 34 H 0.154 0.846 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 8.637 13.339 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.448 6.448 16 N -0.336 5.336 17 C 0.124 3.876 18 C -0.184 4.184 19 C -0.084 4.084 20 C -0.256 4.256 21 C 0.097 3.903 22 O -0.230 6.230 23 C -0.066 4.066 24 C -0.169 4.169 25 C -0.157 4.157 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.238 0.762 34 H 0.171 0.829 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.937 8.360 12.398 19.133 hybrid contribution 1.272 0.051 0.454 1.352 sum -10.664 8.411 12.852 18.699 Atomic orbital electron populations 1.21821 0.98234 0.97954 1.01314 1.21961 0.92712 0.99838 1.02253 1.18745 0.94059 0.88915 0.79868 0.93131 1.21253 0.90616 1.39016 1.06340 0.92028 1.24877 0.98629 0.94791 0.95367 1.69905 1.35047 1.37595 1.09312 0.86394 0.84805 0.77770 0.78119 1.19763 1.20879 1.20878 1.45871 1.12935 1.58649 1.19344 1.16104 0.83644 0.78739 0.82232 1.90861 1.51511 1.64079 1.38348 1.42923 1.20258 1.55393 1.15021 1.17099 0.85965 0.91715 0.92793 1.21494 0.97484 0.99843 0.99563 1.20796 0.94502 0.96475 0.96668 1.21062 1.02958 1.08930 0.92671 1.18355 0.91928 0.95887 0.84167 1.86012 1.36613 1.72448 1.27967 1.22999 0.84355 0.95766 1.03439 1.18690 0.95677 1.07503 0.94985 1.20470 1.00541 1.00068 0.94612 0.93109 0.94285 0.95979 0.95082 0.88236 0.92576 0.78197 0.76210 0.82905 0.85798 0.85982 0.92770 0.88589 0.92794 0.91755 0.91094 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.29 7.03 2.24 -69.08 -0.15 6.88 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.72 -14.46 5.03 -59.81 -0.30 -14.76 16 14 C 0.69 13.63 6.93 -86.92 -0.60 13.03 16 15 O -0.57 -13.01 10.64 5.29 0.06 -12.96 16 16 N -0.69 -10.82 4.99 -14.24 -0.07 -10.89 16 17 C 0.22 3.53 6.41 -83.71 -0.54 2.99 16 18 C -0.16 -2.70 8.71 -39.37 -0.34 -3.04 16 19 C -0.07 -0.90 10.03 -39.63 -0.40 -1.30 16 20 C -0.24 -2.96 9.04 -39.40 -0.36 -3.31 16 21 C 0.14 1.89 6.66 -39.25 -0.26 1.63 16 22 O -0.32 -3.70 9.54 -19.44 -0.19 -3.89 16 23 C 0.03 0.22 9.81 101.05 0.99 1.22 16 24 C -0.16 -2.31 5.91 -104.29 -0.62 -2.92 16 25 C -0.10 -1.14 9.23 36.01 0.33 -0.81 16 26 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.39 6.69 8.56 -40.82 -0.35 6.34 16 33 H 0.40 5.03 7.41 -40.82 -0.30 4.73 16 34 H 0.15 2.90 5.78 -52.48 -0.30 2.59 16 35 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 37 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 42 H 0.06 0.67 6.98 -51.93 -0.36 0.30 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -30.31 336.85 -7.88 -38.19 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.89 Total: 11.68 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.17 Total: -4.06 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.25 Total: -49.36 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.13 Total: -16.84 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.31 -7.88 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.943 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds