Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46757 * 2 1 4 4 H 1.08997 * 109.47033 * 304.99249 * 3 2 1 5 5 C 1.50705 * 109.46975 * 184.99479 * 3 2 1 6 6 H 1.07999 * 120.00022 * 239.99543 * 5 3 2 7 7 C 1.37876 * 119.99710 * 59.99684 * 5 3 2 8 8 N 1.31519 * 120.00393 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46937 * 120.00098 * 9 7 5 12 12 H 1.48502 * 109.47522 * 240.00101 * 9 7 5 13 13 N 1.46496 * 109.47322 * 64.99652 * 3 2 1 14 14 C 1.34776 * 120.00068 * 274.99588 * 13 3 2 15 15 O 1.21588 * 120.00079 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99985 * 180.02562 * 14 13 3 17 17 C 1.39941 * 119.99700 * 174.38388 * 16 14 13 18 18 C 1.38923 * 120.04507 * 335.16777 * 17 16 14 19 19 C 1.38122 * 120.04509 * 179.79368 * 18 17 16 20 20 C 1.38216 * 120.12207 * 0.46257 * 19 18 17 21 21 C 1.38761 * 120.07989 * 359.79388 * 20 19 18 22 22 O 1.35904 * 120.01798 * 179.97438 * 21 20 19 23 23 C 1.42901 * 117.00036 * 359.97438 * 22 21 20 24 24 C 1.38625 * 119.96289 * 359.97093 * 21 20 19 25 25 C 1.50706 * 120.06534 * 180.02562 * 24 21 20 26 26 H 1.09002 * 109.47056 * 60.00961 * 1 2 3 27 27 H 1.08997 * 109.48080 * 300.00507 * 1 2 3 28 28 H 1.09009 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46597 * 119.99310 * 2 1 3 30 30 H 1.09001 * 109.47379 * 239.99679 * 2 1 3 31 31 H 0.96998 * 120.00177 * 179.97438 * 8 7 5 32 32 H 0.97004 * 119.99811 * 95.00269 * 13 3 2 33 33 H 0.96993 * 120.00262 * 354.38277 * 16 14 13 34 34 H 1.08008 * 119.97900 * 0.02620 * 18 17 16 35 35 H 1.08000 * 119.94322 * 180.23661 * 19 18 17 36 36 H 1.07999 * 119.96031 * 179.76865 * 20 19 18 37 37 H 1.08995 * 109.47297 * 59.99478 * 23 22 21 38 38 H 1.09001 * 109.47112 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46644 * 299.99614 * 23 22 21 40 40 H 1.08996 * 109.46959 * 269.98394 * 25 24 21 41 41 H 1.08999 * 109.46365 * 29.97845 * 25 24 21 42 42 H 1.08993 * 109.46972 * 149.98083 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0049 0.8813 -1.3815 10 1 6.5986 1.5464 -0.1939 11 1 6.4971 -0.5175 -1.4625 12 1 6.3991 1.6167 -2.6100 13 7 1.6522 2.0975 1.2517 14 6 0.4349 2.6645 1.3668 15 8 -0.3417 2.6319 0.4318 16 7 0.0785 3.2675 2.5182 17 6 -1.1363 3.9574 2.5998 18 6 -1.7233 4.4705 1.4500 19 6 -2.9245 5.1478 1.5299 20 6 -3.5406 5.3251 2.7544 21 6 -2.9561 4.8193 3.9068 22 8 -3.5628 4.9949 5.1102 23 6 -4.7999 5.7102 5.1149 24 6 -1.7531 4.1349 3.8299 25 6 -1.1166 3.5841 5.0800 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8932 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.8294 -0.0605 -2.9501 32 1 2.2718 2.1233 1.9977 33 1 0.6639 3.2233 3.2903 34 1 -1.2421 4.3366 0.4924 35 1 -3.3813 5.5427 0.6345 36 1 -4.4779 5.8583 2.8144 37 1 -5.5259 5.1845 4.4947 38 1 -5.1758 5.7793 6.1357 39 1 -4.6413 6.7128 4.7178 40 1 -0.4525 4.3338 5.5101 41 1 -1.8932 3.3299 5.8013 42 1 -0.5438 2.6904 4.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599860956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -62.601953 kcal Electronic energy + Delta-G solvation = -23541.524257 eV Core-core repulsion = 20100.227761 eV Total energy + Delta-G solvation = -3441.296496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86608 -40.71185 -38.63239 -36.96739 -35.60929 -34.29180 -33.43180 -32.59587 -30.12262 -28.74863 -28.42864 -27.40087 -25.10977 -23.73082 -22.54960 -21.87990 -21.35799 -19.83781 -19.22505 -18.12405 -17.31391 -17.10034 -16.84024 -16.61276 -16.59149 -16.07538 -15.81089 -15.13172 -14.76183 -14.56357 -14.40552 -14.27115 -14.01620 -13.53420 -13.45777 -13.17898 -13.02340 -12.92928 -12.81054 -12.70485 -12.53132 -12.18339 -12.11880 -12.05611 -11.78220 -11.59105 -11.25798 -11.04086 -10.82615 -10.53677 -9.70114 -9.15110 -8.85212 -8.15268 -6.32037 0.33121 0.51505 1.45198 1.46287 1.57510 1.69731 2.20453 2.41269 2.51387 2.88232 3.14631 3.45451 3.87390 4.02667 4.17467 4.33359 4.46856 4.48209 4.50986 4.55046 4.58480 4.63421 4.76859 4.80357 4.81551 4.83657 5.06450 5.21073 5.30218 5.32094 5.35053 5.42462 5.45789 5.51923 5.60389 5.66461 5.77904 5.88385 5.97481 6.17685 6.28161 6.49464 6.76046 7.23289 7.36138 7.70125 8.90435 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.032519 B = 0.003312 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.816283 B = 8452.114990 C = 8655.104578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.714 5.714 14 C 0.693 3.307 15 O -0.605 6.605 16 N -0.673 5.673 17 C 0.199 3.801 18 C -0.192 4.192 19 C -0.068 4.068 20 C -0.227 4.227 21 C 0.140 3.860 22 O -0.325 6.325 23 C 0.018 3.982 24 C -0.168 4.168 25 C -0.098 4.098 26 H 0.026 0.974 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.418 0.582 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.062 0.938 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 9.420 15.873 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.485 6.485 16 N -0.321 5.321 17 C 0.102 3.898 18 C -0.213 4.213 19 C -0.087 4.087 20 C -0.247 4.247 21 C 0.094 3.906 22 O -0.239 6.239 23 C -0.076 4.076 24 C -0.172 4.172 25 C -0.155 4.155 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.257 0.743 34 H 0.138 0.862 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.080 0.920 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.382 9.176 15.009 21.513 hybrid contribution 1.232 -0.088 -0.262 1.262 sum -11.150 9.088 14.748 20.601 Atomic orbital electron populations 1.21644 0.97110 0.98873 1.00161 1.21807 0.93585 0.99284 1.01335 1.18292 0.93496 0.88802 0.80120 0.98084 1.21582 0.91272 1.38843 1.06712 0.90992 1.25742 1.03212 0.94410 0.95031 1.70054 1.36955 1.38382 1.09855 0.85326 0.79215 0.77781 0.78163 1.18472 1.20495 1.21118 1.45477 1.13689 1.58850 1.18581 1.16157 0.83038 0.78621 0.82848 1.90854 1.52431 1.65190 1.39990 1.42558 1.20726 1.54615 1.14153 1.17228 0.86246 0.92785 0.93511 1.21369 0.99108 1.02181 0.98607 1.21006 0.93572 0.95882 0.98235 1.21386 1.03658 1.07927 0.91696 1.18514 0.91764 0.95212 0.85130 1.86014 1.38120 1.72811 1.26913 1.23351 0.82834 0.95971 1.05461 1.18936 0.96033 1.07191 0.95003 1.20515 1.00873 1.00553 0.93510 0.95499 0.94139 0.93858 0.94035 0.90861 0.92590 0.76368 0.74327 0.86215 0.83996 0.82817 0.91964 0.86154 0.91645 0.90154 0.90593 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.79 16 3 C 0.30 15.05 2.24 44.25 0.10 15.15 16 4 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 5 C -0.55 -28.46 8.73 25.60 0.22 -28.24 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.85 11.29 21.45 0.24 -51.61 16 9 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.71 -29.21 5.03 -461.41 -2.32 -31.53 16 14 C 0.69 28.00 6.93 179.05 1.24 29.24 16 15 O -0.60 -29.01 10.64 -3.99 -0.04 -29.06 16 16 N -0.67 -21.10 4.99 -317.22 -1.58 -22.68 16 17 C 0.20 6.31 6.41 38.13 0.24 6.56 16 18 C -0.19 -6.53 8.71 22.41 0.20 -6.34 16 19 C -0.07 -1.84 10.03 22.24 0.22 -1.62 16 20 C -0.23 -5.17 9.04 22.39 0.20 -4.97 16 21 C 0.14 3.42 6.66 22.49 0.15 3.57 16 22 O -0.33 -6.61 9.54 -92.47 -0.88 -7.49 16 23 C 0.02 0.21 9.81 113.37 1.11 1.32 16 24 C -0.17 -4.46 5.91 -19.65 -0.12 -4.58 16 25 C -0.10 -2.02 9.23 71.24 0.66 -1.36 16 26 H 0.03 1.32 7.84 -2.39 -0.02 1.30 16 27 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 28 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.40 13.73 8.56 -92.71 -0.79 12.93 16 33 H 0.42 10.06 7.41 -92.71 -0.69 9.37 16 34 H 0.12 4.88 5.78 -2.91 -0.02 4.86 16 35 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 36 H 0.15 2.45 6.29 -2.91 -0.02 2.43 16 37 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 38 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.63 7.66 -2.38 -0.02 0.61 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.50 7.53 -2.39 -0.02 1.48 16 42 H 0.06 1.28 6.98 -2.39 -0.02 1.26 16 Total: -1.00 -67.68 336.85 2.48 -65.20 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.42 Total: 34.08 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.46 Total: -0.66 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.66 Total: -105.82 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.92 Total: -36.55 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -67.68 2.48 -65.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599860956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.602 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds