Wall clock time and date at job start Tue Mar 31 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47066 * 2 1 4 4 C 1.34676 * 117.00191 * 180.02562 * 3 2 1 5 5 O 1.21426 * 119.99746 * 0.02562 * 4 3 2 6 6 C 1.48072 * 120.00407 * 180.02562 * 4 3 2 7 7 C 1.39344 * 119.72800 * 180.02562 * 6 4 3 8 8 C 1.38588 * 119.05766 * 179.97438 * 7 6 4 9 9 C 1.38634 * 118.48668 * 359.73458 * 8 7 6 10 10 C 1.38582 * 119.35623 * 0.52816 * 9 8 7 11 11 C 1.50704 * 119.54284 * 179.72876 * 10 9 8 12 12 N 1.46899 * 109.46488 * 94.73500 * 11 10 9 13 13 C 1.46904 * 110.99567 * 175.55105 * 12 11 10 14 14 H 1.09003 * 109.47241 * 325.92802 * 13 12 11 15 15 C 1.50700 * 109.47262 * 205.92491 * 13 12 11 16 16 H 1.08001 * 120.00066 * 0.02562 * 15 13 12 17 17 C 1.37872 * 120.00100 * 179.97438 * 15 13 12 18 18 N 1.31518 * 120.00061 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00035 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47063 * 60.00179 * 19 17 15 21 21 H 1.48498 * 109.47133 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47048 * 299.99874 * 19 17 15 23 23 C 1.53007 * 109.47100 * 85.92596 * 13 12 11 24 24 C 1.53002 * 109.46733 * 59.82459 * 23 13 12 25 25 N 1.31499 * 120.90763 * 359.45832 * 10 9 8 26 26 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47203 * 299.99936 * 1 2 3 28 28 H 1.08999 * 109.47193 * 59.99896 * 1 2 3 29 29 H 1.09002 * 109.46598 * 240.00469 * 2 1 3 30 30 H 1.08999 * 109.47193 * 120.00103 * 2 1 3 31 31 H 1.08007 * 120.47096 * 359.96191 * 7 6 4 32 32 H 1.07995 * 120.75557 * 180.02562 * 8 7 6 33 33 H 1.07996 * 120.31622 * 180.26382 * 9 8 7 34 34 H 1.08995 * 109.47253 * 334.73690 * 11 10 9 35 35 H 1.08999 * 109.46946 * 214.73198 * 11 10 9 36 36 H 1.00896 * 111.00913 * 51.60006 * 12 11 10 37 37 H 0.96998 * 119.99927 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47236 * 299.82828 * 23 13 12 39 39 H 1.08994 * 109.47100 * 179.82181 * 23 13 12 40 40 H 1.09001 * 109.46721 * 175.58626 * 24 23 13 41 41 H 1.09007 * 109.46991 * 55.59643 * 24 23 13 42 42 H 1.08990 * 109.47570 * 295.58960 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5455 -0.0005 5 8 4.0888 0.5825 -0.0015 6 6 3.9151 2.9137 0.0000 7 6 5.2974 3.0897 -0.0011 8 6 5.8121 4.3765 -0.0011 9 6 4.9264 5.4429 -0.0057 10 6 3.5632 5.1939 0.0011 11 6 2.5966 6.3501 0.0024 12 7 2.1887 6.6487 -1.3769 13 6 1.1652 7.7021 -1.4068 14 1 0.5250 7.6117 -0.5293 15 6 0.3317 7.5575 -2.6539 16 1 0.5409 6.7622 -3.3541 17 6 -0.6988 8.4396 -2.9006 18 7 -0.9540 9.4078 -2.0477 19 14 -1.7325 8.2599 -4.4461 20 1 -2.3912 6.9290 -4.4489 21 1 -2.7670 9.3248 -4.4763 22 1 -0.8606 8.3833 -5.6419 23 6 1.8443 9.0733 -1.4035 24 6 2.7464 9.1984 -2.6330 25 7 3.1015 3.9626 0.0011 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 5.9583 2.2354 -0.0017 32 1 6.8789 4.5445 -0.0024 33 1 5.2953 6.4579 -0.0101 34 1 3.0784 7.2261 0.4365 35 1 1.7182 6.0887 0.5925 36 1 1.8647 5.8165 -1.8465 37 1 -1.6787 10.0286 -2.2214 38 1 2.4448 9.1791 -0.5000 39 1 1.0851 9.8548 -1.4289 40 1 3.1690 10.2024 -2.6728 41 1 2.1605 9.0150 -3.5337 42 1 3.5522 8.4674 -2.5684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600152607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:34 Heat of formation + Delta-G solvation = -55.851130 kcal Electronic energy + Delta-G solvation = -22985.463798 eV Core-core repulsion = 19544.460039 eV Total energy + Delta-G solvation = -3441.003758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87766 -39.71588 -36.76246 -36.27063 -33.34877 -32.77768 -31.76443 -31.38655 -30.13140 -26.91327 -25.51864 -24.72443 -23.19569 -23.05440 -21.87762 -21.02796 -19.03096 -18.34639 -17.13328 -16.68009 -16.36678 -16.21313 -15.86246 -14.96410 -14.61749 -14.35817 -14.05481 -13.85807 -13.60458 -13.29869 -13.02962 -12.91775 -12.72899 -12.16268 -12.14290 -12.04622 -11.75391 -11.66399 -11.41781 -10.95144 -10.86713 -10.73974 -10.64005 -10.40111 -10.14779 -9.97967 -9.80842 -9.51450 -9.38628 -9.11375 -8.77649 -8.45377 -7.29668 -6.01208 -4.06378 0.47947 1.15942 2.34918 2.45337 3.32408 3.36766 3.39824 3.74686 4.01349 4.41741 4.62292 4.69220 4.78920 4.83710 4.91624 4.94381 5.09969 5.29849 5.30402 5.47097 5.52591 5.61952 5.65800 5.77963 5.86854 5.98944 6.14086 6.24434 6.27120 6.50822 6.54576 6.66422 6.84199 7.20682 7.27171 7.47385 7.49442 7.73078 7.78974 7.83498 7.91870 8.24802 8.35360 8.62979 9.01187 9.58160 11.04713 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.004136 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.302334 B = 6767.620719 C = 8357.015143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.329 6.329 4 C 0.529 3.471 5 O -0.508 6.508 6 C 0.086 3.914 7 C -0.115 4.115 8 C -0.087 4.087 9 C -0.118 4.118 10 C 0.144 3.856 11 C 0.106 3.894 12 N -0.678 5.678 13 C 0.216 3.784 14 H 0.004 0.996 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.103 4.103 24 C -0.120 4.120 25 N -0.430 5.430 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.336 0.664 37 H 0.261 0.739 38 H 0.010 0.990 39 H 0.088 0.912 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.776 -12.524 5.938 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.244 6.244 4 C 0.372 3.628 5 O -0.396 6.396 6 C -0.051 4.051 7 C -0.136 4.136 8 C -0.112 4.112 9 C -0.138 4.138 10 C 0.003 3.997 11 C -0.024 4.024 12 N -0.310 5.310 13 C 0.109 3.891 14 H 0.022 0.978 15 C -0.550 4.550 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.141 4.141 24 C -0.177 4.177 25 N -0.142 5.142 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.154 0.846 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.421 -12.421 5.858 16.654 hybrid contribution -0.417 -0.553 -0.536 0.876 sum 9.004 -12.974 5.322 16.665 Atomic orbital electron populations 1.21805 0.92295 1.02790 1.04140 1.23102 0.95783 0.80058 1.02423 1.86731 1.22879 1.31901 1.82928 1.20849 0.81057 0.88540 0.72315 1.90817 1.60809 1.41530 1.46434 1.19940 0.90317 0.90530 1.04311 1.21991 0.94451 0.98942 0.98204 1.21591 1.00841 0.91625 0.97168 1.22372 0.93843 1.00913 0.96712 1.21618 0.93134 0.91741 0.93210 1.20904 0.95442 0.91936 0.94134 1.60875 1.45903 1.13246 1.10944 1.19182 0.86449 0.87124 0.96354 0.97847 1.21121 1.13787 1.13760 1.06372 0.92377 1.24859 0.97082 0.95169 0.96611 1.69868 1.30553 1.16603 1.35756 0.86635 0.79956 0.77634 0.83634 1.20361 1.21351 1.20246 1.21449 0.97759 1.00781 0.94160 1.21451 0.99008 0.96918 1.00331 1.67503 1.39371 0.98750 1.08572 0.90291 0.91271 0.91064 0.91162 0.91258 0.83642 0.83797 0.83641 0.89942 0.93754 0.84640 0.92901 0.97143 0.89421 0.96777 0.92481 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 37.16 0.38 -1.00 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.33 -4.86 10.04 -40.43 -0.41 -5.26 16 4 C 0.53 7.98 7.95 34.77 0.28 8.25 16 5 O -0.51 -7.88 16.11 -19.21 -0.31 -8.19 16 6 C 0.09 1.28 6.75 -83.02 -0.56 0.72 16 7 C -0.12 -1.38 9.63 -39.04 -0.38 -1.76 16 8 C -0.09 -0.91 10.17 -39.31 -0.40 -1.31 16 9 C -0.12 -1.45 9.73 -39.31 -0.38 -1.84 16 10 C 0.14 2.23 6.25 -82.61 -0.52 1.72 16 11 C 0.11 1.84 5.84 -4.97 -0.03 1.82 16 12 N -0.68 -13.94 5.64 -109.21 -0.62 -14.55 16 13 C 0.22 5.24 2.30 -68.86 -0.16 5.08 16 14 H 0.00 0.10 7.71 -51.93 -0.40 -0.30 16 15 C -0.51 -13.58 7.26 -34.44 -0.25 -13.83 16 16 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.10 -2.40 5.59 -26.73 -0.15 -2.55 16 24 C -0.12 -2.60 9.52 37.16 0.35 -2.24 16 25 N -0.43 -7.12 10.03 -6.07 -0.06 -7.18 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.15 1.49 7.64 -52.48 -0.40 1.09 16 32 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.08 1.33 7.51 -51.93 -0.39 0.94 16 35 H 0.04 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.34 7.23 8.13 -39.29 -0.32 6.91 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.01 0.21 7.60 -51.93 -0.39 -0.18 16 39 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 1.35 7.07 -51.93 -0.37 0.99 16 42 H 0.04 0.84 7.74 -51.93 -0.40 0.44 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -29.75 355.07 -8.43 -38.18 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.32 Total: 4.18 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -1.67 Total: -4.41 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.05 Total: -45.89 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.72 Total: -13.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.75 -8.43 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600152607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.676 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds