Wall clock time and date at job start Tue Mar 31 2020 07:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47555 * 2 1 4 4 N 1.46900 * 109.46784 * 120.00263 * 2 1 3 5 5 C 1.46905 * 110.99965 * 169.04113 * 4 2 1 6 6 C 1.50692 * 109.47008 * 293.95309 * 5 4 2 7 7 H 1.08000 * 120.00497 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00544 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99821 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46638 * 89.99962 * 10 8 6 12 12 H 1.48502 * 109.47121 * 209.99806 * 10 8 6 13 13 H 1.48493 * 109.47135 * 330.00098 * 10 8 6 14 14 C 1.46894 * 111.00207 * 292.99657 * 4 2 1 15 15 C 1.50697 * 109.47695 * 160.05059 * 14 4 2 16 16 C 1.38196 * 119.53712 * 94.93024 * 15 14 4 17 17 C 1.38962 * 118.91436 * 179.97438 * 16 15 14 18 18 C 1.39309 * 118.56170 * 359.95545 * 17 16 15 19 19 C 1.38397 * 119.05270 * 0.11008 * 18 17 16 20 20 N 1.31894 * 119.54156 * 274.66520 * 15 14 4 21 21 O 1.35943 * 120.73273 * 180.19302 * 18 17 16 22 22 C 1.43251 * 116.54672 * 342.76476 * 21 18 17 23 23 C 1.53445 * 108.35918 * 46.19567 * 22 21 18 24 24 O 1.35632 * 120.39618 * 179.83630 * 17 16 15 25 25 H 1.08997 * 109.47361 * 299.91840 * 1 2 3 26 26 H 1.09010 * 109.47096 * 59.91431 * 1 2 3 27 27 H 1.08999 * 109.47426 * 179.91103 * 1 2 3 28 28 H 1.09005 * 109.47103 * 240.00042 * 2 1 3 29 29 H 1.08992 * 109.47022 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46865 * 300.00432 * 3 2 1 31 31 H 1.09005 * 109.46881 * 59.99906 * 3 2 1 32 32 H 1.09000 * 109.46885 * 53.95835 * 5 4 2 33 33 H 1.08999 * 109.46664 * 173.95179 * 5 4 2 34 34 H 0.96994 * 119.99872 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47246 * 280.05285 * 14 4 2 36 36 H 1.09004 * 109.47036 * 40.04993 * 14 4 2 37 37 H 1.07995 * 120.54095 * 359.97438 * 16 15 14 38 38 H 1.08004 * 119.72493 * 179.90550 * 19 18 17 39 39 H 1.09003 * 109.68733 * 286.47545 * 22 21 18 40 40 H 1.08997 * 109.71457 * 165.92975 * 22 21 18 41 41 H 1.09002 * 109.69420 * 180.58205 * 23 22 21 42 42 H 1.09006 * 109.72929 * 60.01993 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4645 -0.9422 1.1103 6 6 3.7377 -1.9189 -0.0043 7 1 2.9199 -2.3144 -0.5883 8 6 5.0319 -2.3069 -0.2791 9 7 5.2705 -3.1589 -1.2522 10 14 6.4468 -1.6212 0.7297 11 1 6.6942 -2.5031 1.8985 12 1 7.6694 -1.5586 -0.1109 13 1 6.1013 -0.2568 1.2034 14 6 1.6899 0.0632 2.4152 15 6 1.7483 -0.8549 3.6088 16 6 2.9070 -0.9247 4.3586 17 6 2.9464 -1.7751 5.4569 18 6 1.8121 -2.5250 5.7596 19 6 0.6903 -2.4001 4.9587 20 7 0.6910 -1.5766 3.9264 21 8 1.8008 -3.3679 6.8261 22 6 3.0758 -3.7309 7.3689 23 6 3.9212 -2.4581 7.5096 24 8 4.0693 -1.8696 6.2117 25 1 -0.3634 0.5125 0.8907 26 1 -0.3634 0.5152 -0.8893 27 1 -0.3634 -1.0276 -0.0016 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9832 -0.0051 0.9077 33 1 3.8202 -1.3578 2.0530 34 1 6.1810 -3.4315 -1.4457 35 1 2.4071 0.8737 2.5448 36 1 0.6858 0.4776 2.3243 37 1 3.7678 -0.3281 4.0953 38 1 -0.1945 -2.9775 5.1826 39 1 3.5745 -4.4308 6.6984 40 1 2.9411 -4.1923 8.3471 41 1 4.9021 -2.7113 7.9120 42 1 3.4209 -1.7558 8.1764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602446935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:26 Heat of formation + Delta-G solvation = -25.383202 kcal Electronic energy + Delta-G solvation = -24154.313183 eV Core-core repulsion = 20714.630613 eV Total energy + Delta-G solvation = -3439.682570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -41.46972 -39.08744 -37.53681 -37.34314 -32.68966 -32.25446 -31.92630 -30.37827 -29.27774 -27.69216 -26.60075 -25.57616 -23.98430 -23.39962 -21.71079 -20.87393 -18.97328 -18.58019 -17.71304 -17.24140 -16.66546 -15.81319 -15.38945 -15.19207 -14.84191 -14.70498 -14.45872 -14.31454 -14.01415 -13.69024 -13.41326 -13.16388 -12.93358 -12.46962 -12.40213 -12.08741 -11.75711 -11.65004 -11.36828 -11.25433 -11.04865 -10.74818 -10.63504 -10.55717 -10.33275 -9.92050 -9.84581 -9.37511 -9.20418 -8.87020 -8.52927 -8.22779 -7.30651 -6.02199 -3.98246 1.23147 1.38022 2.85883 3.08213 3.29398 3.36351 3.37810 3.86963 4.01358 4.43891 4.46517 4.56299 4.61695 4.68973 4.88766 5.02173 5.15170 5.24869 5.30318 5.36673 5.48625 5.59773 5.76037 5.87404 5.90553 5.94358 5.98242 6.09447 6.11195 6.25476 6.35059 6.46187 6.53732 6.73098 6.75275 6.83323 7.02185 7.09213 7.25581 7.64698 7.94740 8.10037 8.25571 8.69547 9.07560 9.59995 11.11007 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.006003 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.116199 B = 4663.357302 C = 6045.298472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 C -0.183 4.183 4 N -0.511 5.511 5 C 0.156 3.844 6 C -0.503 4.503 7 H 0.081 0.919 8 C 0.069 3.931 9 N -0.901 5.901 10 Si 0.869 3.131 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.099 3.901 15 C 0.160 3.840 16 C -0.158 4.158 17 C 0.092 3.908 18 C -0.016 4.016 19 C 0.113 3.887 20 N -0.451 5.451 21 O -0.303 6.303 22 C 0.019 3.981 23 C 0.020 3.980 24 O -0.301 6.301 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.670 4.642 16.649 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.242 4.242 4 N -0.234 5.234 5 C 0.030 3.970 6 C -0.542 4.542 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.540 5.540 10 Si 0.696 3.304 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.030 4.030 15 C 0.022 3.978 16 C -0.179 4.179 17 C 0.039 3.961 18 C -0.063 4.063 19 C -0.045 4.045 20 N -0.163 5.163 21 O -0.217 6.217 22 C -0.057 4.057 23 C -0.056 4.056 24 O -0.214 6.214 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.011 0.989 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.108 0.892 37 H 0.160 0.840 38 H 0.181 0.819 39 H 0.097 0.903 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.435 4.135 16.139 17.860 hybrid contribution 2.439 0.708 1.235 2.824 sum -3.996 4.843 17.374 18.474 Atomic orbital electron populations 1.21852 0.95592 1.02084 1.00207 1.21644 0.94185 0.91746 0.95043 1.22474 1.02107 0.98666 1.00917 1.62047 1.17854 1.44382 0.99152 1.20295 0.83143 0.95734 0.97863 1.21016 0.93850 1.24395 1.14900 0.90055 1.24871 0.98439 0.94871 0.95033 1.69891 1.20498 1.33249 1.30358 0.86957 0.82612 0.80167 0.80659 1.20232 1.21227 1.19183 1.20945 1.01811 0.92067 0.88181 1.21028 0.87563 0.94618 0.94550 1.21379 1.00536 1.00565 0.95443 1.19052 0.86520 0.96348 0.94197 1.19944 0.96992 0.95944 0.93438 1.22182 0.96313 0.96959 0.89046 1.67602 1.29146 1.05667 1.13901 1.86274 1.29867 1.61884 1.43625 1.23627 0.84141 0.96623 1.01286 1.23676 1.03274 0.95133 0.83501 1.86282 1.29631 1.77934 1.27552 0.93342 0.93237 0.91978 0.88181 0.92233 0.92853 0.93450 0.98907 0.95826 0.92762 0.93737 0.89241 0.84031 0.81853 0.90281 0.86008 0.85993 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.18 37.16 0.34 -1.86 16 2 C 0.08 1.54 2.77 -67.72 -0.19 1.35 16 3 C -0.18 -2.99 8.52 37.16 0.32 -2.67 16 4 N -0.51 -10.65 4.36 -229.53 -1.00 -11.65 16 5 C 0.16 3.76 3.50 -4.98 -0.02 3.74 16 6 C -0.50 -14.32 8.91 -34.44 -0.31 -14.63 16 7 H 0.08 2.53 7.43 -52.49 -0.39 2.14 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 10 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 14 C 0.10 1.73 3.87 -4.98 -0.02 1.71 16 15 C 0.16 2.89 5.96 -82.58 -0.49 2.40 16 16 C -0.16 -2.78 8.36 -39.33 -0.33 -3.11 16 17 C 0.09 1.51 6.52 -38.92 -0.25 1.26 16 18 C -0.02 -0.24 6.50 -39.12 -0.25 -0.50 16 19 C 0.11 1.77 11.14 -17.40 -0.19 1.58 16 20 N -0.45 -7.99 10.26 -9.39 -0.10 -8.09 16 21 O -0.30 -4.01 10.45 -32.06 -0.33 -4.34 16 22 C 0.02 0.18 7.25 37.39 0.27 0.45 16 23 C 0.02 0.19 7.26 37.39 0.27 0.46 16 24 O -0.30 -4.48 10.44 -31.09 -0.32 -4.80 16 25 H 0.05 0.70 6.29 -51.93 -0.33 0.38 16 26 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.10 2.17 6.63 -51.93 -0.34 1.82 16 29 H 0.06 1.08 6.61 -51.93 -0.34 0.73 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.69 6.74 -51.93 -0.35 0.34 16 32 H -0.01 -0.16 5.50 -51.93 -0.29 -0.44 16 33 H 0.02 0.59 5.69 -51.93 -0.30 0.29 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.04 0.74 7.23 -51.93 -0.38 0.36 16 36 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 37 H 0.14 2.41 7.95 -52.49 -0.42 1.99 16 38 H 0.16 2.08 8.06 -52.48 -0.42 1.65 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -33.16 332.23 -7.58 -40.74 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.98 Total: 0.95 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.95 Total: -7.89 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.32 Total: -46.76 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.66 Total: -9.14 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.16 -7.58 -40.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.357 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds