Wall clock time and date at job start Tue Mar 31 2020 07:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47555 * 2 1 4 4 N 1.46900 * 109.46784 * 120.00263 * 2 1 3 5 5 C 1.46905 * 110.99965 * 169.04113 * 4 2 1 6 6 C 1.50692 * 109.47008 * 293.95309 * 5 4 2 7 7 H 1.08000 * 120.00497 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99965 * 179.97438 * 6 5 4 9 9 N 1.31519 * 120.00544 * 180.02562 * 8 6 5 10 10 Si 1.86807 * 119.99821 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46638 * 89.99962 * 10 8 6 12 12 H 1.48502 * 109.47121 * 209.99806 * 10 8 6 13 13 H 1.48493 * 109.47135 * 330.00098 * 10 8 6 14 14 C 1.46894 * 111.00207 * 292.99657 * 4 2 1 15 15 C 1.50697 * 109.47695 * 160.05059 * 14 4 2 16 16 C 1.38196 * 119.53712 * 94.93024 * 15 14 4 17 17 C 1.38962 * 118.91436 * 179.97438 * 16 15 14 18 18 C 1.39309 * 118.56170 * 359.95545 * 17 16 15 19 19 C 1.38397 * 119.05270 * 0.11008 * 18 17 16 20 20 N 1.31894 * 119.54156 * 274.66520 * 15 14 4 21 21 O 1.35943 * 120.73273 * 180.19302 * 18 17 16 22 22 C 1.43251 * 116.54672 * 342.76476 * 21 18 17 23 23 C 1.53445 * 108.35918 * 46.19567 * 22 21 18 24 24 O 1.35632 * 120.39618 * 179.83630 * 17 16 15 25 25 H 1.08997 * 109.47361 * 299.91840 * 1 2 3 26 26 H 1.09010 * 109.47096 * 59.91431 * 1 2 3 27 27 H 1.08999 * 109.47426 * 179.91103 * 1 2 3 28 28 H 1.09005 * 109.47103 * 240.00042 * 2 1 3 29 29 H 1.08992 * 109.47022 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.46865 * 300.00432 * 3 2 1 31 31 H 1.09005 * 109.46881 * 59.99906 * 3 2 1 32 32 H 1.09000 * 109.46885 * 53.95835 * 5 4 2 33 33 H 1.08999 * 109.46664 * 173.95179 * 5 4 2 34 34 H 0.96994 * 119.99872 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.47246 * 280.05285 * 14 4 2 36 36 H 1.09004 * 109.47036 * 40.04993 * 14 4 2 37 37 H 1.07995 * 120.54095 * 359.97438 * 16 15 14 38 38 H 1.08004 * 119.72493 * 179.90550 * 19 18 17 39 39 H 1.09003 * 109.68733 * 286.47545 * 22 21 18 40 40 H 1.08997 * 109.71457 * 165.92975 * 22 21 18 41 41 H 1.09002 * 109.69420 * 180.58205 * 23 22 21 42 42 H 1.09006 * 109.72929 * 60.01993 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4645 -0.9422 1.1103 6 6 3.7377 -1.9189 -0.0043 7 1 2.9199 -2.3144 -0.5883 8 6 5.0319 -2.3069 -0.2791 9 7 5.2705 -3.1589 -1.2522 10 14 6.4468 -1.6212 0.7297 11 1 6.6942 -2.5031 1.8985 12 1 7.6694 -1.5586 -0.1109 13 1 6.1013 -0.2568 1.2034 14 6 1.6899 0.0632 2.4152 15 6 1.7483 -0.8549 3.6088 16 6 2.9070 -0.9247 4.3586 17 6 2.9464 -1.7751 5.4569 18 6 1.8121 -2.5250 5.7596 19 6 0.6903 -2.4001 4.9587 20 7 0.6910 -1.5766 3.9264 21 8 1.8008 -3.3679 6.8261 22 6 3.0758 -3.7309 7.3689 23 6 3.9212 -2.4581 7.5096 24 8 4.0693 -1.8696 6.2117 25 1 -0.3634 0.5125 0.8907 26 1 -0.3634 0.5152 -0.8893 27 1 -0.3634 -1.0276 -0.0016 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9832 -0.0051 0.9077 33 1 3.8202 -1.3578 2.0530 34 1 6.1810 -3.4315 -1.4457 35 1 2.4071 0.8737 2.5448 36 1 0.6858 0.4776 2.3243 37 1 3.7678 -0.3281 4.0953 38 1 -0.1945 -2.9775 5.1826 39 1 3.5745 -4.4308 6.6984 40 1 2.9411 -4.1923 8.3471 41 1 4.9021 -2.7113 7.9120 42 1 3.4209 -1.7558 8.1764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602446935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:23 Heat of formation + Delta-G solvation = -49.425873 kcal Electronic energy + Delta-G solvation = -24155.355751 eV Core-core repulsion = 20714.630613 eV Total energy + Delta-G solvation = -3440.725138 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.82 seconds Orbital eigenvalues (eV) -42.55335 -40.33907 -38.95435 -38.40709 -34.83754 -33.51755 -33.06916 -31.94923 -30.43000 -29.23168 -27.92974 -26.96035 -25.24301 -24.58253 -23.58696 -21.97303 -20.38972 -19.72723 -18.92582 -18.70416 -18.37504 -17.02138 -16.67828 -16.38987 -16.23225 -16.08462 -15.83375 -15.54411 -15.25092 -15.01576 -14.82207 -14.57887 -14.42283 -14.18004 -13.78410 -13.36964 -13.23842 -12.91782 -12.76982 -12.65326 -12.44928 -12.09894 -12.06420 -11.99148 -11.83926 -11.75200 -11.47075 -11.24405 -10.77171 -10.63303 -10.08808 -9.40087 -8.90822 -8.27917 -6.28972 -0.00759 0.15546 1.30641 1.31229 1.41506 1.87115 2.12810 2.32166 2.60359 3.05774 3.09134 3.33226 3.42803 3.52995 3.86334 3.89518 4.01547 4.09497 4.16848 4.30406 4.36822 4.46340 4.52710 4.56054 4.58211 4.68935 4.69311 4.76821 4.86307 4.88941 4.97602 5.06752 5.09948 5.25853 5.28633 5.45167 5.54429 5.60952 5.70801 6.04107 6.17330 6.46888 6.68808 6.77176 7.00307 7.33479 8.88927 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013056 B = 0.006003 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.116199 B = 4663.357302 C = 6045.298472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.077 3.923 3 C -0.174 4.174 4 N -0.529 5.529 5 C 0.171 3.829 6 C -0.506 4.506 7 H 0.037 0.963 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.936 3.064 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.246 1.246 14 C 0.103 3.897 15 C 0.141 3.859 16 C -0.176 4.176 17 C 0.085 3.915 18 C -0.012 4.012 19 C 0.106 3.894 20 N -0.470 5.470 21 O -0.307 6.307 22 C 0.012 3.988 23 C 0.011 3.989 24 O -0.320 6.320 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.070 0.930 32 H -0.003 1.003 33 H 0.020 0.980 34 H 0.265 0.735 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.189 0.811 39 H 0.072 0.928 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 5.819 19.433 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.031 4.031 3 C -0.233 4.233 4 N -0.253 5.253 5 C 0.044 3.956 6 C -0.545 4.545 7 H 0.055 0.945 8 C -0.187 4.187 9 N -0.590 5.590 10 Si 0.760 3.240 11 H -0.198 1.198 12 H -0.205 1.205 13 H -0.170 1.170 14 C -0.024 4.024 15 C 0.003 3.997 16 C -0.197 4.197 17 C 0.032 3.968 18 C -0.060 4.060 19 C -0.052 4.052 20 N -0.182 5.182 21 O -0.221 6.221 22 C -0.063 4.063 23 C -0.063 4.063 24 O -0.234 6.234 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.015 0.985 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.159 0.841 38 H 0.206 0.794 39 H 0.090 0.910 40 H 0.183 0.817 41 H 0.174 0.826 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.400 5.325 18.943 20.692 hybrid contribution 2.360 0.215 0.452 2.412 sum -4.041 5.540 19.396 20.572 Atomic orbital electron populations 1.21755 0.93066 1.01568 1.02233 1.21642 0.96138 0.92627 0.92660 1.22370 1.00651 0.97137 1.03098 1.61911 1.15544 1.46627 1.01238 1.19966 0.85693 0.94397 0.95533 1.21246 0.92792 1.24890 1.15556 0.94500 1.25759 1.01488 0.95232 0.96242 1.70048 1.21324 1.35136 1.32446 0.85875 0.78833 0.80398 0.78910 1.19791 1.20531 1.16982 1.20974 1.02965 0.92010 0.86499 1.21085 0.88101 0.95442 0.95029 1.21456 1.00469 1.01454 0.96314 1.19147 0.87315 0.96136 0.94246 1.19981 0.96454 0.95805 0.93790 1.22610 0.97404 0.96637 0.88584 1.67579 1.29365 1.06352 1.14932 1.86270 1.32096 1.61108 1.42626 1.24018 0.82670 0.96621 1.02971 1.24125 1.05540 0.95121 0.81478 1.86247 1.29196 1.78415 1.29498 0.91507 0.90896 0.93800 0.92435 0.94335 0.90819 0.91091 0.98549 0.96224 0.92588 0.92462 0.87542 0.84139 0.79394 0.90968 0.81666 0.82624 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.18 71.98 0.66 -3.27 16 2 C 0.08 2.92 2.77 44.91 0.12 3.04 16 3 C -0.17 -5.44 8.52 71.98 0.61 -4.82 16 4 N -0.53 -22.23 4.36 -880.09 -3.83 -26.06 16 5 C 0.17 8.35 3.50 85.55 0.30 8.65 16 6 C -0.51 -29.99 8.91 25.60 0.23 -29.76 16 7 H 0.04 2.45 7.43 -2.91 -0.02 2.42 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 10 Si 0.94 45.25 27.47 68.60 1.88 47.13 16 11 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 13 H -0.25 -10.99 6.54 99.48 0.65 -10.33 16 14 C 0.10 3.53 3.87 85.56 0.33 3.86 16 15 C 0.14 5.02 5.96 42.54 0.25 5.27 16 16 C -0.18 -6.09 8.36 22.43 0.19 -5.90 16 17 C 0.08 2.72 6.52 22.70 0.15 2.86 16 18 C -0.01 -0.37 6.50 22.57 0.15 -0.22 16 19 C 0.11 3.20 11.14 84.70 0.94 4.14 16 20 N -0.47 -16.36 10.26 -183.61 -1.88 -18.24 16 21 O -0.31 -7.42 10.45 -80.97 -0.85 -8.27 16 22 C 0.01 0.19 7.25 72.13 0.52 0.72 16 23 C 0.01 0.19 7.26 72.13 0.52 0.71 16 24 O -0.32 -8.97 10.44 -77.51 -0.81 -9.78 16 25 H 0.07 1.79 6.29 -2.39 -0.02 1.78 16 26 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.63 6.63 -2.38 -0.02 2.62 16 29 H 0.04 1.35 6.61 -2.39 -0.02 1.34 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.88 6.74 -2.38 -0.02 1.86 16 32 H 0.00 -0.14 5.50 -2.39 -0.01 -0.16 16 33 H 0.02 0.98 5.69 -2.39 -0.01 0.97 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.06 1.80 7.23 -2.39 -0.02 1.78 16 36 H 0.11 3.21 5.88 -2.39 -0.01 3.19 16 37 H 0.14 4.72 7.95 -2.91 -0.02 4.70 16 38 H 0.19 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -75.05 332.23 1.23 -73.83 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.97 Total: 15.35 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.45 Total: -13.68 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.42 Total: -104.59 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -1.66 Total: -18.04 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -75.05 1.23 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602446935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.400 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.82 seconds