Wall clock time and date at job start Tue Mar 31 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46850 * 2 1 4 4 H 1.09006 * 109.46795 * 55.00712 * 3 2 1 5 5 N 1.46491 * 109.47432 * 295.00508 * 3 2 1 6 6 C 1.36938 * 120.00151 * 154.42919 * 5 3 2 7 7 H 1.07995 * 119.99954 * 0.02562 * 6 5 3 8 8 C 1.38817 * 119.99974 * 179.97438 * 6 5 3 9 9 N 1.31613 * 119.99800 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99973 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47424 * 89.99665 * 10 8 6 12 12 H 1.48505 * 109.47315 * 209.99518 * 10 8 6 13 13 H 1.48504 * 109.47416 * 329.99639 * 10 8 6 14 14 C 1.50703 * 109.46981 * 174.99920 * 3 2 1 15 15 C 1.38171 * 120.02465 * 99.02027 * 14 3 2 16 16 C 1.38241 * 120.05610 * 179.97438 * 15 14 3 17 17 C 1.38291 * 120.10833 * 0.02562 * 16 15 14 18 18 C 1.38122 * 120.06072 * 0.02562 * 17 16 15 19 19 C 1.38709 * 120.03061 * 279.04685 * 14 3 2 20 20 O 1.35899 * 120.05400 * 359.95218 * 19 14 3 21 21 C 1.42905 * 116.99826 * 180.02562 * 20 19 14 22 22 C 1.50694 * 109.47073 * 180.02562 * 21 20 19 23 23 O 1.21284 * 120.00303 * 0.02562 * 22 21 20 24 24 N 1.34773 * 120.00055 * 179.97438 * 22 21 20 25 25 C 1.46497 * 120.00348 * 179.97438 * 24 22 21 26 26 H 1.08994 * 109.47340 * 59.99662 * 1 2 3 27 27 H 1.09001 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46963 * 299.99192 * 1 2 3 29 29 H 1.08998 * 109.46662 * 240.00629 * 2 1 3 30 30 H 1.08994 * 109.47340 * 120.00338 * 2 1 3 31 31 H 0.97007 * 119.99982 * 334.42494 * 5 3 2 32 32 H 0.97002 * 120.00290 * 180.02562 * 9 8 6 33 33 H 1.07997 * 119.97196 * 0.02562 * 15 14 3 34 34 H 1.07998 * 119.94706 * 180.02562 * 16 15 14 35 35 H 1.07998 * 119.97065 * 179.74304 * 17 16 15 36 36 H 1.07993 * 120.03258 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46955 * 300.00209 * 21 20 19 38 38 H 1.09001 * 109.47180 * 59.99863 * 21 20 19 39 39 H 0.97000 * 120.00302 * 0.02562 * 24 22 21 40 40 H 1.09000 * 109.47344 * 300.00323 * 25 24 22 41 41 H 1.09001 * 109.46995 * 60.00102 * 25 24 22 42 42 H 1.08999 * 109.47763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 1.5120 3.4590 -1.2971 7 1 1.6876 4.0498 -0.4103 8 6 1.1452 4.0797 -2.4834 9 7 1.0099 5.3881 -2.5269 10 14 0.8423 3.0578 -4.0174 11 1 -0.5874 2.6601 -4.0730 12 1 1.1802 3.8594 -5.2209 13 1 1.6932 1.8414 -3.9779 14 6 3.5419 1.4444 0.1239 15 6 4.3282 1.5984 -1.0018 16 6 5.7060 1.6007 -0.8889 17 6 6.3008 1.4484 0.3503 18 6 5.5192 1.2931 1.4785 19 6 4.1360 1.2909 1.3678 20 8 3.3647 1.1397 2.4765 21 6 4.0448 0.9873 3.7241 22 6 3.0344 0.8329 4.8314 23 8 1.8486 0.8511 4.5772 24 7 3.4484 0.6736 6.1040 25 6 2.4662 0.5241 7.1806 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.4950 1.5669 -2.0483 32 1 0.7532 5.8219 -3.3557 33 1 3.8661 1.7178 -1.9705 34 1 6.3190 1.7216 -1.7698 35 1 7.3774 1.4464 0.4355 36 1 5.9841 1.1738 2.4459 37 1 4.6797 0.1022 3.6860 38 1 4.6595 1.8675 3.9127 39 1 4.3967 0.6587 6.3073 40 1 1.8315 1.4094 7.2190 41 1 1.8512 -0.3558 6.9917 42 1 2.9848 0.4068 8.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611379778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:43 Heat of formation + Delta-G solvation = -31.200359 kcal Electronic energy + Delta-G solvation = -23698.420624 eV Core-core repulsion = 20258.485803 eV Total energy + Delta-G solvation = -3439.934821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.34474 -39.36657 -37.19528 -35.81041 -34.81620 -32.53758 -30.78424 -30.32805 -29.79177 -28.86340 -26.06498 -25.54378 -22.87773 -21.91670 -21.68272 -20.75447 -19.76884 -18.05359 -17.52991 -17.45209 -16.41900 -16.08240 -15.49102 -15.31165 -14.81852 -14.49645 -14.05976 -13.96503 -13.60874 -13.46509 -13.30786 -13.15130 -12.63062 -12.54581 -12.39069 -12.31441 -11.83159 -11.46704 -11.37187 -11.03344 -10.93389 -10.77304 -10.42320 -10.35029 -10.23253 -10.01216 -9.97484 -9.48822 -9.43745 -8.90414 -8.33174 -7.72922 -7.22206 -5.69138 -3.04820 1.80767 1.85432 2.40627 2.51093 3.40724 3.44590 3.49678 3.69701 4.21595 4.44571 4.64739 4.80772 4.90876 4.92015 5.10093 5.14874 5.22664 5.43386 5.51165 5.53803 5.59490 5.66585 5.79699 5.86445 5.91540 6.05012 6.11682 6.20840 6.42530 6.48679 6.51803 6.60976 6.67077 6.77987 6.93696 6.96467 7.08647 7.21395 7.31934 7.70306 7.98298 8.10077 8.50234 9.28476 10.00123 10.20678 11.49593 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.004679 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.974245 B = 5982.687724 C = 6785.961522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.221 3.779 4 H 0.074 0.926 5 N -0.741 5.741 6 C -0.236 4.236 7 H 0.090 0.910 8 C 0.005 3.995 9 N -0.935 5.935 10 Si 0.879 3.121 11 H -0.284 1.284 12 H -0.292 1.292 13 H -0.277 1.277 14 C -0.103 4.103 15 C -0.050 4.050 16 C -0.160 4.160 17 C -0.098 4.098 18 C -0.218 4.218 19 C 0.118 3.882 20 O -0.284 6.284 21 C 0.043 3.957 22 C 0.512 3.488 23 O -0.505 6.505 24 N -0.737 5.737 25 C 0.090 3.910 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.361 0.639 32 H 0.258 0.742 33 H 0.135 0.865 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.402 0.598 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.873 -13.116 15.787 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C 0.111 3.889 4 H 0.092 0.908 5 N -0.382 5.382 6 C -0.365 4.365 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.583 5.583 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.203 1.203 14 C -0.107 4.107 15 C -0.069 4.069 16 C -0.178 4.178 17 C -0.116 4.116 18 C -0.237 4.237 19 C 0.073 3.927 20 O -0.196 6.196 21 C -0.037 4.037 22 C 0.297 3.703 23 O -0.378 6.378 24 N -0.392 5.392 25 C -0.054 4.054 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.194 0.806 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.235 0.765 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.708 -12.846 15.651 22.455 hybrid contribution 0.723 -0.451 -0.907 1.245 sum 10.431 -13.297 14.744 22.427 Atomic orbital electron populations 1.21677 0.95626 1.00027 1.02735 1.21683 0.96253 0.96709 1.01042 1.19094 0.87026 0.92122 0.90680 0.90799 1.42826 1.82978 1.05040 1.07394 1.19086 1.38620 0.81314 0.97527 0.89249 1.24631 1.01859 0.95261 0.97233 1.69698 1.54565 1.07397 1.26627 0.86633 0.78290 0.79680 0.84411 1.21092 1.21883 1.20319 1.20608 0.99694 1.01100 0.89289 1.20992 0.92398 0.94460 0.99018 1.21073 0.95167 1.04286 0.97260 1.20738 0.98844 0.99714 0.92340 1.21013 0.92430 1.10928 0.99338 1.18889 0.89213 0.98442 0.86130 1.86190 1.33339 1.87834 1.12266 1.22327 0.94285 1.03142 0.83917 1.20219 0.89845 0.76905 0.83365 1.90798 1.17298 1.46947 1.82770 1.45616 1.10643 1.76206 1.06742 1.21542 0.92811 1.02422 0.88642 0.92084 0.94025 0.92677 0.92841 0.91915 0.80612 0.93179 0.84753 0.86575 0.86688 0.86444 0.89380 0.89261 0.76478 0.91978 0.92067 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.80 37.16 0.36 -2.16 16 2 C -0.12 -2.14 5.46 -26.73 -0.15 -2.29 16 3 C 0.22 4.66 2.17 -69.09 -0.15 4.51 16 4 H 0.07 1.74 7.76 -51.93 -0.40 1.34 16 5 N -0.74 -17.77 3.00 -54.55 -0.16 -17.94 16 6 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 7 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 8 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 9 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 10 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 11 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 14 C -0.10 -2.02 5.07 -104.47 -0.53 -2.55 16 15 C -0.05 -0.96 9.32 -39.60 -0.37 -1.33 16 16 C -0.16 -2.57 10.04 -39.56 -0.40 -2.97 16 17 C -0.10 -1.39 10.04 -39.60 -0.40 -1.78 16 18 C -0.22 -3.09 9.04 -39.43 -0.36 -3.44 16 19 C 0.12 2.03 6.66 -39.22 -0.26 1.77 16 20 O -0.28 -4.72 8.88 -39.33 -0.35 -5.07 16 21 C 0.04 0.48 5.22 36.00 0.19 0.66 16 22 C 0.51 6.32 7.91 -10.99 -0.09 6.23 16 23 O -0.51 -8.93 16.50 -14.36 -0.24 -9.16 16 24 N -0.74 -5.70 5.71 -67.08 -0.38 -6.09 16 25 C 0.09 0.62 10.70 59.85 0.64 1.26 16 26 H 0.06 1.16 7.75 -51.93 -0.40 0.75 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.36 8.44 5.67 -40.82 -0.23 8.21 16 32 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 33 H 0.13 2.76 7.16 -52.49 -0.38 2.39 16 34 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 37 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 39 H 0.40 1.59 8.83 -40.82 -0.36 1.23 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -36.16 352.14 -7.82 -43.97 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.30 Total: 9.38 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.75 Total: -8.91 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.23 Total: -53.02 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.59 Total: -14.23 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.16 -7.82 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611379778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.770 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds