Wall clock time and date at job start Tue Mar 31 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46850 * 2 1 4 4 H 1.09006 * 109.46795 * 55.00712 * 3 2 1 5 5 N 1.46491 * 109.47432 * 295.00508 * 3 2 1 6 6 C 1.36938 * 120.00151 * 154.42919 * 5 3 2 7 7 H 1.07995 * 119.99954 * 0.02562 * 6 5 3 8 8 C 1.38817 * 119.99974 * 179.97438 * 6 5 3 9 9 N 1.31613 * 119.99800 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 119.99973 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47424 * 89.99665 * 10 8 6 12 12 H 1.48505 * 109.47315 * 209.99518 * 10 8 6 13 13 H 1.48504 * 109.47416 * 329.99639 * 10 8 6 14 14 C 1.50703 * 109.46981 * 174.99920 * 3 2 1 15 15 C 1.38171 * 120.02465 * 99.02027 * 14 3 2 16 16 C 1.38241 * 120.05610 * 179.97438 * 15 14 3 17 17 C 1.38291 * 120.10833 * 0.02562 * 16 15 14 18 18 C 1.38122 * 120.06072 * 0.02562 * 17 16 15 19 19 C 1.38709 * 120.03061 * 279.04685 * 14 3 2 20 20 O 1.35899 * 120.05400 * 359.95218 * 19 14 3 21 21 C 1.42905 * 116.99826 * 180.02562 * 20 19 14 22 22 C 1.50694 * 109.47073 * 180.02562 * 21 20 19 23 23 O 1.21284 * 120.00303 * 0.02562 * 22 21 20 24 24 N 1.34773 * 120.00055 * 179.97438 * 22 21 20 25 25 C 1.46497 * 120.00348 * 179.97438 * 24 22 21 26 26 H 1.08994 * 109.47340 * 59.99662 * 1 2 3 27 27 H 1.09001 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46963 * 299.99192 * 1 2 3 29 29 H 1.08998 * 109.46662 * 240.00629 * 2 1 3 30 30 H 1.08994 * 109.47340 * 120.00338 * 2 1 3 31 31 H 0.97007 * 119.99982 * 334.42494 * 5 3 2 32 32 H 0.97002 * 120.00290 * 180.02562 * 9 8 6 33 33 H 1.07997 * 119.97196 * 0.02562 * 15 14 3 34 34 H 1.07998 * 119.94706 * 180.02562 * 16 15 14 35 35 H 1.07998 * 119.97065 * 179.74304 * 17 16 15 36 36 H 1.07993 * 120.03258 * 179.97438 * 18 17 16 37 37 H 1.09000 * 109.46955 * 300.00209 * 21 20 19 38 38 H 1.09001 * 109.47180 * 59.99863 * 21 20 19 39 39 H 0.97000 * 120.00302 * 0.02562 * 24 22 21 40 40 H 1.09000 * 109.47344 * 300.00323 * 25 24 22 41 41 H 1.09001 * 109.46995 * 60.00102 * 25 24 22 42 42 H 1.08999 * 109.47763 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 1.5120 3.4590 -1.2971 7 1 1.6876 4.0498 -0.4103 8 6 1.1452 4.0797 -2.4834 9 7 1.0099 5.3881 -2.5269 10 14 0.8423 3.0578 -4.0174 11 1 -0.5874 2.6601 -4.0730 12 1 1.1802 3.8594 -5.2209 13 1 1.6932 1.8414 -3.9779 14 6 3.5419 1.4444 0.1239 15 6 4.3282 1.5984 -1.0018 16 6 5.7060 1.6007 -0.8889 17 6 6.3008 1.4484 0.3503 18 6 5.5192 1.2931 1.4785 19 6 4.1360 1.2909 1.3678 20 8 3.3647 1.1397 2.4765 21 6 4.0448 0.9873 3.7241 22 6 3.0344 0.8329 4.8314 23 8 1.8486 0.8511 4.5772 24 7 3.4484 0.6736 6.1040 25 6 2.4662 0.5241 7.1806 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.4950 1.5669 -2.0483 32 1 0.7532 5.8219 -3.3557 33 1 3.8661 1.7178 -1.9705 34 1 6.3190 1.7216 -1.7698 35 1 7.3774 1.4464 0.4355 36 1 5.9841 1.1738 2.4459 37 1 4.6797 0.1022 3.6860 38 1 4.6595 1.8675 3.9127 39 1 4.3967 0.6587 6.3073 40 1 1.8315 1.4094 7.2190 41 1 1.8512 -0.3558 6.9917 42 1 2.9848 0.4068 8.1321 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611379778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:42 Heat of formation + Delta-G solvation = -56.765070 kcal Electronic energy + Delta-G solvation = -23699.529193 eV Core-core repulsion = 20258.485803 eV Total energy + Delta-G solvation = -3441.043390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46751 -40.45107 -38.50422 -37.35534 -35.68166 -34.57892 -32.35029 -31.83257 -31.11538 -29.90946 -27.22709 -26.76686 -24.81242 -23.26327 -22.93125 -21.77655 -21.27028 -19.72077 -19.06078 -18.45837 -17.36728 -17.12543 -17.02643 -16.41246 -16.21603 -15.77355 -15.60306 -15.25395 -15.17229 -14.82906 -14.56485 -14.55108 -14.08825 -13.63546 -13.59690 -13.31440 -13.19903 -13.09581 -12.93003 -12.77364 -12.21256 -12.19715 -12.05033 -11.95826 -11.74057 -11.70438 -11.59814 -11.05576 -10.93462 -10.21042 -9.63834 -9.32773 -8.96807 -7.99798 -5.33485 0.55441 0.60745 1.36776 1.41021 1.47805 1.48436 1.65380 2.49266 2.77034 2.94834 3.30883 3.58309 3.67320 3.93169 4.06516 4.14715 4.15317 4.22348 4.28568 4.37606 4.43529 4.47360 4.61079 4.62268 4.71132 4.88871 4.93916 4.95263 5.02761 5.08418 5.21836 5.31415 5.34681 5.44197 5.47224 5.62742 5.77221 5.85404 6.01232 6.24338 6.41698 6.59589 7.09184 7.18789 7.83046 8.06771 9.22683 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016125 B = 0.004679 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.974245 B = 5982.687724 C = 6785.961522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.223 3.777 4 H 0.033 0.967 5 N -0.737 5.737 6 C -0.219 4.219 7 H 0.043 0.957 8 C -0.060 4.060 9 N -0.987 5.987 10 Si 0.952 3.048 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.249 1.249 14 C -0.139 4.139 15 C -0.076 4.076 16 C -0.167 4.167 17 C -0.086 4.086 18 C -0.207 4.207 19 C 0.111 3.889 20 O -0.317 6.317 21 C 0.035 3.965 22 C 0.506 3.494 23 O -0.574 6.574 24 N -0.714 5.714 25 C 0.084 3.916 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.366 0.634 32 H 0.257 0.743 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.424 0.576 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.036 -15.666 16.850 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.115 3.885 4 H 0.051 0.949 5 N -0.380 5.380 6 C -0.350 4.350 7 H 0.062 0.938 8 C -0.251 4.251 9 N -0.637 5.637 10 Si 0.779 3.221 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.173 1.173 14 C -0.142 4.142 15 C -0.094 4.094 16 C -0.186 4.186 17 C -0.104 4.104 18 C -0.225 4.225 19 C 0.066 3.934 20 O -0.231 6.231 21 C -0.043 4.043 22 C 0.292 3.708 23 O -0.452 6.452 24 N -0.369 5.369 25 C -0.059 4.059 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.200 0.800 32 H 0.066 0.934 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.945 -15.457 16.794 26.239 hybrid contribution -0.161 0.349 -0.977 1.050 sum 12.784 -15.107 15.817 25.334 Atomic orbital electron populations 1.21652 0.95435 1.01561 1.01116 1.21599 0.96324 0.94722 1.01998 1.19056 0.88804 0.93012 0.87676 0.94859 1.42663 1.83352 1.03236 1.08769 1.18877 1.37116 0.83122 0.95873 0.93843 1.25417 1.02404 0.96436 1.00847 1.69892 1.56645 1.09656 1.27554 0.85456 0.78577 0.78791 0.79249 1.20631 1.22143 1.17299 1.20356 0.98178 1.04430 0.91274 1.20895 0.94084 0.96622 0.97802 1.21333 0.93889 1.03995 0.99335 1.21242 1.01000 0.97020 0.91125 1.21490 0.90838 1.08566 1.01595 1.18950 0.90596 0.98360 0.85481 1.86148 1.35223 1.87875 1.13809 1.22732 0.94158 1.06130 0.81297 1.20626 0.89154 0.76076 0.84919 1.90777 1.19978 1.50510 1.83940 1.45491 1.12170 1.73809 1.05381 1.21702 0.93096 1.01101 0.90041 0.93684 0.90877 0.94258 0.91475 0.91036 0.79979 0.93422 0.87301 0.84702 0.82395 0.81828 0.85378 0.86502 0.73805 0.93690 0.93216 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 9.80 71.98 0.71 -4.29 16 2 C -0.11 -3.95 5.46 30.60 0.17 -3.78 16 3 C 0.22 9.86 2.17 44.25 0.10 9.96 16 4 H 0.03 1.71 7.76 -2.38 -0.02 1.69 16 5 N -0.74 -36.77 3.00 -326.51 -0.98 -37.75 16 6 C -0.22 -13.20 10.41 84.03 0.87 -12.32 16 7 H 0.04 2.96 8.06 -2.91 -0.02 2.94 16 8 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 9 N -0.99 -65.62 13.97 21.65 0.30 -65.32 16 10 Si 0.95 46.98 27.74 68.60 1.90 48.88 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 13 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 14 C -0.14 -5.54 5.07 -19.77 -0.10 -5.64 16 15 C -0.08 -2.90 9.32 22.25 0.21 -2.70 16 16 C -0.17 -5.04 10.04 22.28 0.22 -4.81 16 17 C -0.09 -2.06 10.04 22.25 0.22 -1.83 16 18 C -0.21 -5.00 9.04 22.37 0.20 -4.79 16 19 C 0.11 3.69 6.66 22.51 0.15 3.84 16 20 O -0.32 -10.43 8.88 -73.38 -0.65 -11.08 16 21 C 0.03 0.68 5.22 71.23 0.37 1.06 16 22 C 0.51 11.99 7.91 87.66 0.69 12.68 16 23 O -0.57 -21.04 16.50 16.00 0.26 -20.77 16 24 N -0.71 -9.34 5.71 -484.54 -2.77 -12.11 16 25 C 0.08 1.03 10.70 127.77 1.37 2.39 16 26 H 0.04 1.72 7.75 -2.39 -0.02 1.70 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.37 17.32 5.67 -92.70 -0.53 16.80 16 32 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 33 H 0.11 4.61 7.16 -2.91 -0.02 4.59 16 34 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 35 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.16 2.36 6.30 -2.91 -0.02 2.35 16 37 H 0.13 1.48 7.66 -2.39 -0.02 1.46 16 38 H 0.12 1.64 7.66 -2.39 -0.02 1.63 16 39 H 0.42 1.67 8.83 -92.71 -0.82 0.85 16 40 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -86.64 352.14 3.35 -83.29 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.37 Total: 28.31 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.65 Total: -13.45 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -3.45 Total: -115.18 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.39 Total: -31.85 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.90 Total: 48.88 kcal Total: -86.64 3.35 -83.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611379778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.528 kcal (2) G-P(sol) polarization free energy of solvation -86.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds