Wall clock time and date at job start Tue Mar 31 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47020 * 2 1 4 4 N 1.46498 * 109.47318 * 120.00391 * 2 1 3 5 5 C 1.46499 * 120.00012 * 304.66826 * 4 2 1 6 6 C 1.50701 * 109.46716 * 263.42192 * 5 4 2 7 7 H 1.07994 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99949 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99707 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00198 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47245 * 90.00063 * 10 8 6 12 12 H 1.48501 * 109.47117 * 209.99971 * 10 8 6 13 13 H 1.48499 * 109.47282 * 329.99814 * 10 8 6 14 14 C 1.34778 * 119.99938 * 124.66397 * 4 2 1 15 15 O 1.21612 * 120.00031 * 4.32281 * 14 4 2 16 16 C 1.47418 * 119.99844 * 184.32165 * 14 4 2 17 17 C 1.36098 * 126.44562 * 174.02726 * 16 14 4 18 18 O 1.34256 * 106.94847 * 180.29738 * 17 16 14 19 19 C 1.34055 * 108.22392 * 359.57479 * 18 17 16 20 20 C 1.50703 * 125.37574 * 180.16610 * 19 18 17 21 21 C 1.53775 * 113.61506 * 37.81140 * 20 19 18 22 22 C 1.53782 * 87.08198 * 220.01529 * 21 20 19 23 23 C 1.53784 * 113.61539 * 300.30924 * 20 19 18 24 24 N 1.29930 * 109.24502 * 0.43765 * 19 18 17 25 25 H 1.08999 * 109.46931 * 299.99569 * 1 2 3 26 26 H 1.08995 * 109.47706 * 59.99525 * 1 2 3 27 27 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46456 * 240.00198 * 2 1 3 29 29 H 1.08995 * 109.47190 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47826 * 300.00545 * 3 2 1 31 31 H 1.08999 * 109.46917 * 60.00422 * 3 2 1 32 32 H 1.08999 * 109.47179 * 23.42214 * 5 4 2 33 33 H 1.08993 * 109.47365 * 143.42679 * 5 4 2 34 34 H 0.97000 * 119.99831 * 179.97438 * 9 8 6 35 35 H 1.07994 * 126.52508 * 0.03240 * 17 16 14 36 36 H 1.09005 * 112.84616 * 169.11638 * 20 19 18 37 37 H 1.09003 * 113.61247 * 334.56472 * 21 20 19 38 38 H 1.08997 * 113.61696 * 105.46723 * 21 20 19 39 39 H 1.08993 * 113.61306 * 270.88477 * 22 21 20 40 40 H 1.09000 * 113.69163 * 139.98172 * 22 21 20 41 41 H 1.08998 * 113.61212 * 254.52922 * 23 20 19 42 42 H 1.08994 * 113.61174 * 25.43233 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.5822 -0.2527 2.5243 6 6 2.6178 0.6696 3.1142 7 1 3.5112 0.9061 2.5555 8 6 2.4241 1.2122 4.3668 9 7 1.3354 0.9253 5.0466 10 14 3.7074 2.3560 5.0978 11 1 3.3971 3.7570 4.7154 12 1 3.6950 2.2325 6.5777 13 1 5.0502 1.9878 4.5817 14 6 2.8689 -1.7291 1.0746 15 8 3.2926 -2.0430 -0.0213 16 6 3.2857 -2.4843 2.2700 17 6 4.0417 -3.6158 2.2887 18 8 4.1781 -3.9743 3.5753 19 6 3.5285 -3.0779 4.3313 20 6 3.4361 -3.1084 5.8352 21 6 4.7305 -3.5742 6.5225 22 6 3.8371 -4.3556 7.5004 23 6 2.7774 -4.3842 6.3862 24 7 2.9863 -2.1818 3.5624 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 0.6322 0.2748 2.4391 33 1 1.4588 -1.1213 3.1710 34 1 1.1993 1.3068 5.9280 35 1 4.4502 -4.1301 1.4314 36 1 3.0247 -2.1894 6.2527 37 1 5.3530 -4.2119 5.8949 38 1 5.2902 -2.7659 6.9932 39 1 3.5364 -3.7776 8.3741 40 1 4.2264 -5.3406 7.7578 41 1 1.7605 -4.2297 6.7467 42 1 2.8660 -5.2433 5.7213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618201228.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:28 Heat of formation + Delta-G solvation = -4.094081 kcal Electronic energy + Delta-G solvation = -24534.829383 eV Core-core repulsion = 21096.069979 eV Total energy + Delta-G solvation = -3438.759404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.30029 -40.74371 -39.46200 -37.46166 -35.85036 -34.66619 -32.86552 -31.40910 -29.03252 -28.07222 -27.02851 -26.56070 -25.40770 -24.80805 -22.75536 -22.00891 -20.58459 -19.69037 -18.72129 -18.27131 -17.90020 -17.59274 -16.98984 -16.56810 -16.32745 -15.99368 -15.83001 -15.07811 -14.63311 -14.56998 -14.20406 -13.96312 -13.68998 -13.47638 -13.38371 -13.29158 -13.25403 -12.97333 -12.76605 -12.64068 -12.29970 -12.16586 -12.09564 -11.87435 -11.61984 -11.45310 -11.38743 -11.35798 -11.19790 -10.84651 -10.29866 -9.90627 -9.36330 -8.02293 -6.06988 0.19719 1.18962 1.36902 1.39217 1.47489 1.68796 2.21311 2.39362 2.49734 3.05969 3.29669 3.59624 3.69062 3.73463 3.94472 3.99289 4.01844 4.14256 4.24095 4.39790 4.64324 4.68684 4.71374 4.78558 4.79228 4.80714 4.90159 4.93074 4.96209 5.05453 5.06702 5.11583 5.17238 5.20073 5.33220 5.45479 5.53415 5.59332 5.91552 5.96748 6.30427 6.54572 6.76008 7.00137 7.26225 7.56237 9.05313 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012451 B = 0.007168 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.202366 B = 3905.151663 C = 5387.551684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 C -0.143 4.143 4 N -0.579 5.579 5 C 0.246 3.754 6 C -0.497 4.497 7 H 0.028 0.972 8 C 0.034 3.966 9 N -0.913 5.913 10 Si 0.933 3.067 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.285 1.285 14 C 0.588 3.412 15 O -0.592 6.592 16 C -0.096 4.096 17 C 0.012 3.988 18 O -0.193 6.193 19 C 0.186 3.814 20 C -0.031 4.031 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.123 4.123 24 N -0.434 5.434 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.063 0.937 34 H 0.260 0.740 35 H 0.259 0.741 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -9.965 1.295 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.201 4.201 4 N -0.307 5.307 5 C 0.126 3.874 6 C -0.536 4.536 7 H 0.047 0.953 8 C -0.165 4.165 9 N -0.553 5.553 10 Si 0.760 3.240 11 H -0.204 1.204 12 H -0.203 1.203 13 H -0.211 1.211 14 C 0.376 3.624 15 O -0.476 6.476 16 C -0.215 4.215 17 C -0.062 4.062 18 O -0.079 6.079 19 C -0.023 4.023 20 C -0.050 4.050 21 C -0.166 4.166 22 C -0.158 4.158 23 C -0.162 4.162 24 N -0.162 5.162 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.274 0.726 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.319 -9.522 1.138 9.866 hybrid contribution 0.971 0.659 0.051 1.175 sum 3.290 -8.863 1.189 9.528 Atomic orbital electron populations 1.22047 0.93367 1.02023 1.03130 1.21195 0.95363 0.93563 0.87683 1.21978 1.00037 0.95500 1.02582 1.48294 1.43353 1.29280 1.09776 1.19497 0.93929 0.96436 0.77557 1.21196 1.04485 1.26723 1.01200 0.95335 1.25246 0.96703 0.97699 0.96897 1.70007 1.27019 1.45350 1.12938 0.85964 0.80008 0.79930 0.78064 1.20406 1.20267 1.21107 1.17127 0.78827 0.80282 0.86132 1.90649 1.58685 1.71084 1.27165 1.21912 1.07233 0.99730 0.92673 1.25646 0.98995 0.96360 0.85248 1.84289 1.59486 1.47452 1.16698 1.26909 0.93165 0.85042 0.97227 1.21453 1.01999 1.01943 0.79624 1.23028 0.94853 1.00586 0.98143 1.22754 0.95027 1.01728 0.96245 1.23006 0.99905 0.94954 0.98285 1.71496 1.20648 1.23618 1.00395 0.93084 0.88699 0.92978 0.89462 0.94733 0.89328 0.93013 0.96731 0.91980 0.93038 0.72556 0.87114 0.88971 0.90491 0.88828 0.88621 0.90325 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.10 71.98 0.65 -4.19 16 2 C 0.12 4.82 3.24 44.99 0.15 4.97 16 3 C -0.14 -5.30 8.92 71.98 0.64 -4.66 16 4 N -0.58 -26.68 2.38 -806.02 -1.91 -28.59 16 5 C 0.25 12.67 4.12 85.63 0.35 13.02 16 6 C -0.50 -27.41 7.47 25.60 0.19 -27.22 16 7 H 0.03 1.66 7.81 -2.91 -0.02 1.64 16 8 C 0.03 1.85 5.46 84.65 0.46 2.31 16 9 N -0.91 -51.41 13.29 21.45 0.28 -51.13 16 10 Si 0.93 44.16 29.54 68.60 2.03 46.19 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 C 0.59 27.21 7.60 86.66 0.66 27.87 16 15 O -0.59 -27.64 16.24 -4.07 -0.07 -27.71 16 16 C -0.10 -4.14 6.65 40.41 0.27 -3.87 16 17 C 0.01 0.39 11.95 67.32 0.80 1.20 16 18 O -0.19 -6.25 10.40 0.34 0.00 -6.24 16 19 C 0.19 6.87 7.33 88.39 0.65 7.51 16 20 C -0.03 -0.93 4.29 -11.01 -0.05 -0.98 16 21 C -0.13 -2.89 7.62 31.12 0.24 -2.66 16 22 C -0.12 -2.11 8.08 31.12 0.25 -1.86 16 23 C -0.12 -2.78 7.63 31.12 0.24 -2.54 16 24 N -0.43 -19.65 7.16 -293.03 -2.10 -21.75 16 25 H 0.05 1.85 6.50 -2.39 -0.02 1.83 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 3.35 6.93 -2.39 -0.02 3.33 16 29 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.05 2.15 7.29 -2.39 -0.02 2.14 16 32 H 0.01 0.79 6.20 -2.39 -0.01 0.78 16 33 H 0.06 3.44 5.28 -2.39 -0.01 3.42 16 34 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.26 6.36 8.06 -2.91 -0.02 6.34 16 36 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 37 H 0.09 1.98 7.82 -2.39 -0.02 1.96 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.92 8.09 -2.39 -0.02 1.90 16 Total: -1.00 -67.73 345.34 4.76 -62.98 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.01 Total: 17.36 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.51 Total: 8.90 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -3.73 Total: -101.47 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.06 Total: -33.95 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -67.73 4.76 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618201228.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.882 kcal (2) G-P(sol) polarization free energy of solvation -67.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds