Wall clock time and date at job start Tue Mar 31 2020 07:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 N 1.46901 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00173 * 66.04725 * 4 3 2 6 6 C 1.46901 * 110.99812 * 190.00582 * 4 3 2 7 7 C 1.50702 * 109.47247 * 170.00018 * 6 4 3 8 8 O 1.21287 * 119.99573 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99975 * 179.97438 * 7 6 4 10 10 C 1.39921 * 119.99877 * 174.78368 * 9 7 6 11 11 C 1.38965 * 120.03677 * 326.32563 * 10 9 7 12 12 C 1.38157 * 120.06801 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.13706 * 359.70116 * 12 11 10 14 14 C 1.38906 * 120.07315 * 0.55189 * 13 12 11 15 15 O 1.35748 * 120.03767 * 179.74321 * 14 13 12 16 16 C 1.34831 * 117.00041 * 173.82629 * 15 14 13 17 17 H 1.07995 * 120.00225 * 354.59241 * 16 15 14 18 18 C 1.38659 * 119.99714 * 174.59445 * 16 15 14 19 19 N 1.31558 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47145 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47420 * 300.00426 * 20 18 16 24 24 C 1.38716 * 120.03490 * 146.34353 * 10 9 7 25 25 H 1.09004 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46782 * 299.99690 * 1 2 3 27 27 H 1.09000 * 109.46954 * 59.99679 * 1 2 3 28 28 H 1.09001 * 109.47286 * 240.00353 * 2 1 3 29 29 H 1.09000 * 109.46954 * 120.00321 * 2 1 3 30 30 H 1.08999 * 109.46882 * 60.00663 * 3 2 1 31 31 H 1.08993 * 109.47583 * 300.00309 * 3 2 1 32 32 H 1.09005 * 109.47276 * 183.94895 * 5 4 3 33 33 H 1.09001 * 109.47469 * 303.95608 * 5 4 3 34 34 H 1.09003 * 109.46975 * 63.95051 * 5 4 3 35 35 H 1.08998 * 109.47339 * 49.99716 * 6 4 3 36 36 H 1.09002 * 109.46631 * 289.99874 * 6 4 3 37 37 H 0.96999 * 120.00281 * 354.77895 * 9 7 6 38 38 H 1.08000 * 119.96674 * 0.02638 * 11 10 9 39 39 H 1.08000 * 119.93094 * 179.97438 * 12 11 10 40 40 H 1.08006 * 119.96415 * 180.29447 * 13 12 11 41 41 H 0.96991 * 120.00494 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.06977 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2523 6 6 4.0353 2.7932 0.2389 7 6 5.5216 2.7184 0.4769 8 8 6.0866 1.6455 0.4510 9 7 6.2228 3.8437 0.7185 10 6 7.5806 3.7650 1.0471 11 6 8.0562 2.6882 1.7856 12 6 9.3967 2.6101 2.1108 13 6 10.2694 3.5985 1.6980 14 6 9.7994 4.6800 0.9640 15 8 10.6566 5.6533 0.5632 16 6 10.1623 6.6066 -0.2522 17 1 9.1528 6.5261 -0.6273 18 6 10.9503 7.6903 -0.6092 19 7 12.1802 7.7881 -0.1527 20 14 10.2658 9.0106 -1.7394 21 1 9.0696 9.6279 -1.1121 22 1 11.2994 10.0524 -1.9666 23 1 9.8842 8.4010 -3.0386 24 6 8.4533 4.7619 0.6363 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.1234 0.8324 -1.1973 33 1 3.6304 -0.1147 -1.4043 34 1 3.7452 1.5259 -2.0852 35 1 3.5485 3.2237 1.1139 36 1 3.8377 3.4188 -0.6315 37 1 5.7862 4.7083 0.6645 38 1 7.3773 1.9116 2.1056 39 1 9.7639 1.7725 2.6853 40 1 11.3177 3.5321 1.9498 41 1 12.7313 8.5463 -0.4020 42 1 8.0860 5.6001 0.0628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730098055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:19 Heat of formation + Delta-G solvation = -29.072594 kcal Electronic energy + Delta-G solvation = -22656.287060 eV Core-core repulsion = 19216.444506 eV Total energy + Delta-G solvation = -3439.842554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28874 -38.81870 -37.63689 -36.28388 -34.20578 -33.43749 -32.24348 -29.82189 -28.88478 -27.77300 -27.18499 -25.30919 -23.75761 -21.86997 -21.72060 -20.95457 -19.95502 -17.97994 -17.71295 -16.90128 -16.11710 -15.96211 -15.43141 -15.13898 -14.92527 -14.71030 -14.30790 -14.11501 -13.96443 -13.55895 -13.48783 -13.01953 -12.88773 -12.52332 -12.33136 -12.07221 -11.94296 -11.84807 -11.66841 -11.42847 -11.35336 -11.06804 -11.02358 -10.84946 -10.74906 -10.46201 -9.88813 -9.52997 -9.40220 -8.80706 -8.53264 -7.72308 -7.14860 -6.45275 -4.05094 1.97427 2.38411 2.86618 3.05635 3.10738 3.12816 3.14967 3.81678 3.95204 4.55811 4.59749 4.70454 4.73170 4.96093 5.02923 5.09263 5.10940 5.18112 5.23269 5.28136 5.37600 5.46761 5.50120 5.71241 5.72229 5.84459 5.93477 6.00320 6.04856 6.11888 6.26578 6.29129 6.61871 6.69652 6.82264 6.99976 7.00146 7.12831 7.32341 7.42369 7.72069 7.82204 7.98884 8.35620 8.99912 9.70774 10.72744 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003034 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.923711 B = 9225.346743 C =10233.774607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.525 5.525 5 C 0.014 3.986 6 C 0.037 3.963 7 C 0.510 3.490 8 O -0.501 6.501 9 N -0.672 5.672 10 C 0.182 3.818 11 C -0.205 4.205 12 C -0.063 4.063 13 C -0.201 4.201 14 C 0.168 3.832 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.089 0.911 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.257 4.257 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.020 0.980 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.405 0.595 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.270 0.730 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.243 -8.899 -0.094 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.073 4.073 4 N -0.249 5.249 5 C -0.133 4.133 6 C -0.095 4.095 7 C 0.296 3.704 8 O -0.374 6.374 9 N -0.318 5.318 10 C 0.089 3.911 11 C -0.225 4.225 12 C -0.082 4.082 13 C -0.220 4.220 14 C 0.113 3.887 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.106 0.894 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.279 4.279 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.240 0.760 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.288 -9.789 0.285 21.632 hybrid contribution -0.927 1.784 -1.320 2.405 sum -20.215 -8.006 -1.035 21.767 Atomic orbital electron populations 1.21740 0.95606 1.01813 1.01715 1.21542 0.95226 0.96201 1.03013 1.22213 0.86621 0.97688 1.00784 1.61647 1.07109 1.19705 1.36428 1.22638 1.03165 0.99388 0.88125 1.21976 0.92878 0.91725 1.02875 1.20527 0.88981 0.84095 0.76776 1.90692 1.70805 1.28092 1.47854 1.43503 1.09344 1.09535 1.69383 1.17393 0.81818 0.96221 0.95701 1.20553 0.96235 1.00374 1.05371 1.20537 0.92594 0.97095 0.97981 1.20252 1.00082 0.95257 1.06448 1.19089 0.88422 0.89390 0.91765 1.84019 1.34528 1.31828 1.57595 1.21210 1.00387 1.00922 1.24322 0.89364 1.25271 0.95437 0.97621 0.98153 1.70021 1.07121 1.30191 1.42382 0.85804 0.78484 0.79541 0.79710 1.19581 1.20261 1.19577 1.20815 0.93209 1.02960 1.10870 0.92493 0.92642 0.92921 0.91818 0.90928 0.90718 0.94835 0.89132 0.91140 0.96159 0.87676 0.91819 0.75983 0.86258 0.86620 0.86400 0.91967 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.93 5.86 -26.73 -0.16 -1.09 16 3 C 0.05 0.45 4.96 -3.82 -0.02 0.43 16 4 N -0.52 -5.76 4.50 -244.37 -1.10 -6.86 16 5 C 0.01 0.16 9.01 60.06 0.54 0.70 16 6 C 0.04 0.38 5.45 -4.97 -0.03 0.35 16 7 C 0.51 7.38 7.29 -10.99 -0.08 7.30 16 8 O -0.50 -9.08 12.02 5.55 0.07 -9.01 16 9 N -0.67 -9.93 5.34 -9.88 -0.05 -9.99 16 10 C 0.18 3.47 6.27 -83.72 -0.52 2.94 16 11 C -0.20 -3.96 8.65 -39.34 -0.34 -4.30 16 12 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 13 C -0.20 -4.34 9.99 -39.36 -0.39 -4.73 16 14 C 0.17 4.07 6.64 -39.13 -0.26 3.81 16 15 O -0.18 -5.02 9.76 0.05 0.00 -5.01 16 16 C -0.39 -10.84 9.44 30.89 0.29 -10.55 16 17 H 0.09 2.24 5.30 -52.49 -0.28 1.97 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 20 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 C -0.26 -5.55 9.04 -39.20 -0.35 -5.91 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 31 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 32 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 33 H 0.07 0.70 6.30 -51.93 -0.33 0.38 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.11 0.85 7.93 -51.93 -0.41 0.44 16 36 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.41 4.62 8.82 -40.82 -0.36 4.26 16 38 H 0.12 2.28 6.43 -52.49 -0.34 1.94 16 39 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.12 2.44 8.06 -52.48 -0.42 2.01 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -32.75 346.37 -7.58 -40.33 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.01 Total: 6.71 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -1.45 Total: -12.20 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.39 Total: -41.24 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.75 -7.58 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730098055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.260 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds