Wall clock time and date at job start Tue Mar 31 2020 07:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46794 * 2 1 4 4 N 1.46901 * 109.46739 * 179.97438 * 3 2 1 5 5 C 1.46893 * 111.00173 * 66.04725 * 4 3 2 6 6 C 1.46901 * 110.99812 * 190.00582 * 4 3 2 7 7 C 1.50702 * 109.47247 * 170.00018 * 6 4 3 8 8 O 1.21287 * 119.99573 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99975 * 179.97438 * 7 6 4 10 10 C 1.39921 * 119.99877 * 174.78368 * 9 7 6 11 11 C 1.38965 * 120.03677 * 326.32563 * 10 9 7 12 12 C 1.38157 * 120.06801 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.13706 * 359.70116 * 12 11 10 14 14 C 1.38906 * 120.07315 * 0.55189 * 13 12 11 15 15 O 1.35748 * 120.03767 * 179.74321 * 14 13 12 16 16 C 1.34831 * 117.00041 * 173.82629 * 15 14 13 17 17 H 1.07995 * 120.00225 * 354.59241 * 16 15 14 18 18 C 1.38659 * 119.99714 * 174.59445 * 16 15 14 19 19 N 1.31558 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99830 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47145 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47420 * 300.00426 * 20 18 16 24 24 C 1.38716 * 120.03490 * 146.34353 * 10 9 7 25 25 H 1.09004 * 109.46935 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46782 * 299.99690 * 1 2 3 27 27 H 1.09000 * 109.46954 * 59.99679 * 1 2 3 28 28 H 1.09001 * 109.47286 * 240.00353 * 2 1 3 29 29 H 1.09000 * 109.46954 * 120.00321 * 2 1 3 30 30 H 1.08999 * 109.46882 * 60.00663 * 3 2 1 31 31 H 1.08993 * 109.47583 * 300.00309 * 3 2 1 32 32 H 1.09005 * 109.47276 * 183.94895 * 5 4 3 33 33 H 1.09001 * 109.47469 * 303.95608 * 5 4 3 34 34 H 1.09003 * 109.46975 * 63.95051 * 5 4 3 35 35 H 1.08998 * 109.47339 * 49.99716 * 6 4 3 36 36 H 1.09002 * 109.46631 * 289.99874 * 6 4 3 37 37 H 0.96999 * 120.00281 * 354.77895 * 9 7 6 38 38 H 1.08000 * 119.96674 * 0.02638 * 11 10 9 39 39 H 1.08000 * 119.93094 * 179.97438 * 12 11 10 40 40 H 1.08006 * 119.96415 * 180.29447 * 13 12 11 41 41 H 0.96991 * 120.00494 * 180.02562 * 19 18 16 42 42 H 1.07994 * 120.06977 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8856 -1.2523 6 6 4.0353 2.7932 0.2389 7 6 5.5216 2.7184 0.4769 8 8 6.0866 1.6455 0.4510 9 7 6.2228 3.8437 0.7185 10 6 7.5806 3.7650 1.0471 11 6 8.0562 2.6882 1.7856 12 6 9.3967 2.6101 2.1108 13 6 10.2694 3.5985 1.6980 14 6 9.7994 4.6800 0.9640 15 8 10.6566 5.6533 0.5632 16 6 10.1623 6.6066 -0.2522 17 1 9.1528 6.5261 -0.6273 18 6 10.9503 7.6903 -0.6092 19 7 12.1802 7.7881 -0.1527 20 14 10.2658 9.0106 -1.7394 21 1 9.0696 9.6279 -1.1121 22 1 11.2994 10.0524 -1.9666 23 1 9.8842 8.4010 -3.0386 24 6 8.4533 4.7619 0.6363 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8935 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.1234 0.8324 -1.1973 33 1 3.6304 -0.1147 -1.4043 34 1 3.7452 1.5259 -2.0852 35 1 3.5485 3.2237 1.1139 36 1 3.8377 3.4188 -0.6315 37 1 5.7862 4.7083 0.6645 38 1 7.3773 1.9116 2.1056 39 1 9.7639 1.7725 2.6853 40 1 11.3177 3.5321 1.9498 41 1 12.7313 8.5463 -0.4020 42 1 8.0860 5.6001 0.0628 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730098055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:18 Heat of formation + Delta-G solvation = -51.700120 kcal Electronic energy + Delta-G solvation = -22657.268263 eV Core-core repulsion = 19216.444506 eV Total energy + Delta-G solvation = -3440.823757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.60118 -40.42755 -38.72325 -37.78194 -35.62140 -34.24449 -34.07000 -31.24871 -30.50137 -28.92128 -27.89638 -27.26183 -24.68194 -23.51058 -23.03937 -21.63877 -21.33281 -19.77258 -19.28045 -18.14381 -17.32683 -17.01773 -16.73949 -16.43751 -16.22494 -16.01489 -15.59954 -15.55760 -15.42896 -14.95668 -14.61883 -14.29757 -14.18166 -13.67910 -13.57677 -13.33430 -12.97947 -12.80745 -12.77143 -12.67516 -12.61831 -12.39375 -12.35122 -12.13753 -11.92964 -11.49972 -11.43981 -11.22118 -10.81374 -10.63591 -9.35643 -9.31264 -8.86128 -8.45851 -6.14836 0.40539 0.69803 1.36039 1.46368 1.52508 1.64661 1.94509 2.18575 2.83891 2.98759 3.17334 3.49372 3.67267 3.97383 4.12853 4.14604 4.26935 4.30421 4.33920 4.45277 4.48656 4.53295 4.56300 4.64455 4.70637 4.75247 4.85475 4.89720 5.02438 5.10758 5.11781 5.25377 5.31606 5.39113 5.44943 5.49569 5.67344 5.67736 5.91123 6.01827 6.08890 6.18947 6.51748 6.98151 7.18505 7.77982 8.76941 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003034 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.923711 B = 9225.346743 C =10233.774607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.545 5.545 5 C 0.019 3.981 6 C 0.045 3.955 7 C 0.508 3.492 8 O -0.539 6.539 9 N -0.664 5.664 10 C 0.190 3.810 11 C -0.199 4.199 12 C -0.052 4.052 13 C -0.216 4.216 14 C 0.133 3.867 15 O -0.226 6.226 16 C -0.413 4.413 17 H 0.102 0.898 18 C -0.023 4.023 19 N -0.920 5.920 20 Si 1.019 2.981 21 H -0.253 1.253 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.261 4.261 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.135 0.865 36 H 0.089 0.911 37 H 0.423 0.577 38 H 0.129 0.871 39 H 0.152 0.848 40 H 0.118 0.882 41 H 0.273 0.727 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.778 -9.016 -0.431 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.270 5.270 5 C -0.129 4.129 6 C -0.086 4.086 7 C 0.297 3.703 8 O -0.415 6.415 9 N -0.311 5.311 10 C 0.095 3.905 11 C -0.220 4.220 12 C -0.071 4.071 13 C -0.235 4.235 14 C 0.082 3.918 15 O -0.133 6.133 16 C -0.489 4.489 17 H 0.119 0.881 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.838 3.162 21 H -0.177 1.177 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.282 4.282 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.153 0.847 36 H 0.106 0.894 37 H 0.261 0.739 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.136 0.864 41 H 0.082 0.918 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.896 -9.932 -0.038 24.957 hybrid contribution 0.027 1.538 -1.103 1.893 sum -22.869 -8.393 -1.141 24.387 Atomic orbital electron populations 1.21705 0.94262 1.02228 1.02265 1.21526 0.96347 0.95893 1.02135 1.22271 0.84742 0.98116 1.01897 1.61613 1.08819 1.20233 1.36288 1.22510 1.01133 1.00307 0.88910 1.22023 0.89314 0.92103 1.05165 1.21398 0.90668 0.83026 0.75208 1.90684 1.71919 1.29509 1.49389 1.43512 1.07571 1.11049 1.68979 1.17430 0.83676 0.94998 0.94360 1.20844 0.96511 1.00272 1.04385 1.20913 0.92166 0.97031 0.96979 1.20470 1.00803 0.95469 1.06790 1.19618 0.89534 0.89542 0.93117 1.83984 1.36494 1.33383 1.59404 1.21748 1.01163 1.01216 1.24807 0.88057 1.26601 0.95627 0.99988 0.99806 1.70177 1.09031 1.31538 1.44998 0.84651 0.78185 0.75947 0.77459 1.17710 1.19852 1.18389 1.20854 0.92640 1.03792 1.10939 0.92229 0.92082 0.92335 0.92345 0.92209 0.89407 0.93746 0.92323 0.90460 0.95085 0.84741 0.89372 0.73860 0.85312 0.83012 0.86371 0.91830 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.59 5.86 30.60 0.18 -1.41 16 3 C 0.06 0.75 4.96 86.30 0.43 1.18 16 4 N -0.54 -10.49 4.50 -927.05 -4.17 -14.66 16 5 C 0.02 0.40 9.01 127.69 1.15 1.55 16 6 C 0.04 0.76 5.45 85.56 0.47 1.22 16 7 C 0.51 13.49 7.29 87.66 0.64 14.13 16 8 O -0.54 -18.78 12.02 -3.05 -0.04 -18.81 16 9 N -0.66 -18.06 5.34 -303.56 -1.62 -19.68 16 10 C 0.19 7.01 6.27 38.14 0.24 7.25 16 11 C -0.20 -7.38 8.65 22.42 0.19 -7.19 16 12 C -0.05 -1.93 10.03 22.23 0.22 -1.71 16 13 C -0.22 -9.47 9.99 22.41 0.22 -9.25 16 14 C 0.13 6.68 6.64 22.56 0.15 6.83 16 15 O -0.23 -13.54 9.76 -22.73 -0.22 -13.76 16 16 C -0.41 -23.64 9.44 67.92 0.64 -23.00 16 17 H 0.10 5.25 5.30 -2.91 -0.02 5.23 16 18 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 19 N -0.92 -55.94 13.67 21.61 0.30 -55.64 16 20 Si 1.02 41.76 29.55 68.60 2.03 43.79 16 21 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 24 C -0.26 -11.30 9.04 22.51 0.20 -11.09 16 25 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.82 6.47 -2.39 -0.02 0.80 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.95 7.93 -2.39 -0.02 0.93 16 31 H 0.04 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.06 1.61 5.88 -2.38 -0.01 1.60 16 33 H 0.08 1.45 6.30 -2.39 -0.02 1.43 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.13 1.54 7.93 -2.39 -0.02 1.52 16 36 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 37 H 0.42 8.42 8.82 -92.71 -0.82 7.60 16 38 H 0.13 4.62 6.43 -2.91 -0.02 4.60 16 39 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 40 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 41 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 42 H 0.13 5.49 5.72 -2.91 -0.02 5.47 16 Total: -1.00 -74.85 346.37 2.41 -72.44 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.22 Total: 29.29 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 5.92 Total: -22.96 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.50 Total: -89.98 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.26 Total: -32.57 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -74.85 2.41 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730098055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.738 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds