Wall clock time and date at job start Tue Mar 31 2020 07:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 N 1.46504 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.46501 * 119.99859 * 269.99863 * 4 3 2 6 6 C 1.53001 * 109.46881 * 270.00201 * 5 4 3 7 7 C 1.34775 * 119.99895 * 90.00046 * 4 3 2 8 8 O 1.21589 * 120.00079 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00009 * 179.97438 * 7 4 3 10 10 C 1.39945 * 120.00335 * 174.69170 * 9 7 4 11 11 C 1.38957 * 120.03274 * 326.35028 * 10 9 7 12 12 C 1.38162 * 120.06560 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13691 * 359.72203 * 12 11 10 14 14 C 1.38902 * 120.06833 * 0.55244 * 13 12 11 15 15 O 1.35755 * 120.03346 * 179.72219 * 14 13 12 16 16 C 1.34833 * 117.00051 * 173.81944 * 15 14 13 17 17 H 1.07999 * 120.00115 * 354.59913 * 16 15 14 18 18 C 1.38642 * 120.00186 * 174.59376 * 16 15 14 19 19 N 1.31559 * 120.00315 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 89.99871 * 20 18 16 22 22 H 1.48497 * 109.47209 * 209.99762 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99923 * 20 18 16 24 24 C 1.38705 * 120.03300 * 146.36828 * 10 9 7 25 25 H 1.09002 * 109.47308 * 299.99609 * 1 2 3 26 26 H 1.08997 * 109.47438 * 59.99978 * 1 2 3 27 27 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47144 * 239.99879 * 2 1 3 29 29 H 1.09002 * 109.47224 * 120.00441 * 2 1 3 30 30 H 1.08990 * 109.46924 * 60.00340 * 3 2 1 31 31 H 1.09004 * 109.46765 * 299.99956 * 3 2 1 32 32 H 1.09003 * 109.47114 * 30.00253 * 5 4 3 33 33 H 1.08995 * 109.46992 * 150.00358 * 5 4 3 34 34 H 1.09008 * 109.46691 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.46918 * 299.99847 * 6 5 4 36 36 H 1.08995 * 109.47180 * 60.00272 * 6 5 4 37 37 H 0.97005 * 119.99995 * 354.69610 * 9 7 4 38 38 H 1.07999 * 119.96592 * 359.97438 * 11 10 9 39 39 H 1.07994 * 119.92778 * 179.97438 * 12 11 10 40 40 H 1.07993 * 119.96306 * 180.27536 * 13 12 11 41 41 H 0.97007 * 119.99795 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.07067 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2678 6 6 4.4931 2.8847 1.7096 7 6 4.1783 1.4426 -1.1681 8 8 3.5699 1.4433 -2.2208 9 7 5.5261 1.4431 -1.1687 10 6 6.2254 1.3311 -2.3757 11 6 5.7058 0.5651 -3.4121 12 6 6.3958 0.4537 -4.6038 13 6 7.6014 1.1078 -4.7712 14 6 8.1288 1.8704 -3.7369 15 8 9.3161 2.5081 -3.9001 16 6 9.7093 3.3329 -2.9086 17 1 9.0498 3.5295 -2.0762 18 6 10.9603 3.9285 -2.9574 19 7 11.3442 4.7328 -1.9897 20 14 12.1009 3.5890 -4.3974 21 1 11.8574 4.5886 -5.4681 22 1 13.5118 3.6829 -3.9441 23 1 11.8400 2.2254 -4.9246 24 6 7.4381 1.9844 -2.5386 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.6492 0.9283 2.0277 33 1 5.1903 0.9285 1.1370 34 1 5.0389 2.8846 2.6531 35 1 5.0819 3.3986 0.9498 36 1 3.5408 3.3985 1.8404 37 1 6.0115 1.5210 -0.3324 38 1 4.7619 0.0557 -3.2855 39 1 5.9901 -0.1426 -5.4076 40 1 8.1363 1.0223 -5.7054 41 1 12.2197 5.1493 -2.0237 42 1 7.8439 2.5805 -1.7346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746663680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:27 Heat of formation + Delta-G solvation = -28.946561 kcal Electronic energy + Delta-G solvation = -23259.504236 eV Core-core repulsion = 19819.667147 eV Total energy + Delta-G solvation = -3439.837089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -40.61846 -38.99853 -37.12340 -36.01371 -34.66119 -33.43651 -32.32408 -30.50144 -29.43505 -28.72389 -26.24181 -25.17005 -23.67915 -22.44265 -21.74536 -21.26803 -19.50852 -18.47257 -17.76258 -17.48915 -16.30565 -15.60723 -15.25490 -15.08470 -14.91256 -14.41838 -14.14610 -14.08768 -13.91076 -13.64198 -13.46248 -13.07512 -12.87889 -12.50711 -12.27766 -12.19714 -12.12044 -11.82610 -11.69770 -11.52034 -11.39501 -11.15119 -10.95320 -10.85730 -10.67038 -10.27622 -9.96075 -9.63607 -9.48011 -8.84048 -8.79241 -7.73893 -7.23794 -6.41109 -4.08117 2.01054 2.32667 2.61432 3.23162 3.26700 3.30938 3.41632 3.87660 4.24932 4.54885 4.63408 4.75020 4.77015 4.91429 5.00853 5.06507 5.09376 5.11854 5.21665 5.46364 5.52833 5.55729 5.61228 5.64664 5.80073 5.91830 5.95751 5.98595 6.03382 6.06785 6.19244 6.23365 6.39864 6.51746 6.77886 6.95845 7.16099 7.24893 7.27926 7.63811 7.79892 7.97399 8.04799 8.64935 8.94718 9.57739 10.66734 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.003621 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.108331 B = 7729.924401 C = 8754.900775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.133 3.867 4 N -0.630 5.630 5 C 0.103 3.897 6 C -0.176 4.176 7 C 0.706 3.294 8 O -0.569 6.569 9 N -0.682 5.682 10 C 0.198 3.802 11 C -0.197 4.197 12 C -0.064 4.064 13 C -0.203 4.203 14 C 0.175 3.825 15 O -0.217 6.217 16 C -0.388 4.388 17 H 0.104 0.896 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.246 4.246 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.279 0.721 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.997 -8.097 7.852 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.010 3.990 4 N -0.367 5.367 5 C -0.020 4.020 6 C -0.235 4.235 7 C 0.408 3.592 8 O -0.446 6.446 9 N -0.330 5.330 10 C 0.104 3.896 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.223 4.223 14 C 0.123 3.877 15 O -0.122 6.122 16 C -0.464 4.464 17 H 0.121 0.879 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.268 4.268 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.240 0.760 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.134 -7.954 7.037 19.316 hybrid contribution 0.839 0.166 0.243 0.889 sum -15.295 -7.788 7.280 18.643 Atomic orbital electron populations 1.21681 0.95220 1.01833 1.01882 1.21910 0.96007 0.97484 1.02521 1.21366 0.77730 0.96808 1.03063 1.47227 1.06593 1.78439 1.04438 1.21538 0.97129 0.97520 0.85845 1.22267 1.02472 0.96669 1.02090 1.15848 0.81604 0.77783 0.83987 1.90932 1.67431 1.56573 1.29619 1.42774 1.04784 1.76309 1.09138 1.17220 0.91522 0.95455 0.85372 1.20628 1.02162 1.04605 0.94401 1.20523 0.93557 0.97796 0.96413 1.20224 0.98409 1.04787 0.98849 1.18788 0.86003 0.90742 0.92195 1.83613 1.31386 1.53014 1.44181 1.20719 1.02215 1.21398 1.02039 0.87858 1.24455 0.96378 0.95332 0.97819 1.69648 1.21315 1.29389 1.31672 0.86179 0.78861 0.80209 0.81658 1.19875 1.20898 1.18286 1.20890 0.97987 1.07685 1.00237 0.92772 0.92400 0.92586 0.91364 0.92150 0.90776 0.89713 0.89981 0.90692 0.91176 0.91958 0.92142 0.76041 0.86082 0.86500 0.86434 0.91114 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.15 0.37 -0.72 16 2 C -0.14 -1.27 6.26 -26.73 -0.17 -1.44 16 3 C 0.13 1.33 5.41 -4.04 -0.02 1.31 16 4 N -0.63 -7.35 2.47 -179.42 -0.44 -7.79 16 5 C 0.10 0.88 5.85 -4.04 -0.02 0.86 16 6 C -0.18 -1.50 10.24 37.16 0.38 -1.12 16 7 C 0.71 11.26 8.01 -86.92 -0.70 10.57 16 8 O -0.57 -11.04 13.63 5.29 0.07 -10.97 16 9 N -0.68 -10.98 5.17 -14.24 -0.07 -11.05 16 10 C 0.20 3.87 6.27 -83.71 -0.52 3.34 16 11 C -0.20 -3.78 8.65 -39.34 -0.34 -4.13 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.57 16 13 C -0.20 -4.14 9.99 -39.36 -0.39 -4.54 16 14 C 0.18 4.10 6.64 -39.13 -0.26 3.84 16 15 O -0.22 -5.73 8.58 0.03 0.00 -5.73 16 16 C -0.39 -10.89 9.90 30.88 0.31 -10.58 16 17 H 0.10 2.95 5.53 -52.49 -0.29 2.66 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.32 13.96 55.48 0.77 -24.54 16 20 Si 0.91 21.66 28.62 -169.99 -4.86 16.80 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 24 C -0.25 -5.37 9.04 -39.21 -0.35 -5.73 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 31 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.07 0.62 6.45 -51.93 -0.33 0.29 16 34 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 5.43 6.63 -40.82 -0.27 5.16 16 38 H 0.12 2.31 6.44 -52.49 -0.34 1.97 16 39 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.13 3.02 5.71 -52.49 -0.30 2.72 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -32.06 349.34 -7.61 -39.67 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.12 Total: 6.59 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.22 Total: -8.24 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.26 Total: -43.39 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.07 Total: -16.70 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.86 Total: 16.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.06 -7.61 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746663680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.724 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds