Wall clock time and date at job start Tue Mar 31 2020 07:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 N 1.46504 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.46501 * 119.99859 * 269.99863 * 4 3 2 6 6 C 1.53001 * 109.46881 * 270.00201 * 5 4 3 7 7 C 1.34775 * 119.99895 * 90.00046 * 4 3 2 8 8 O 1.21589 * 120.00079 * 0.02562 * 7 4 3 9 9 N 1.34776 * 120.00009 * 179.97438 * 7 4 3 10 10 C 1.39945 * 120.00335 * 174.69170 * 9 7 4 11 11 C 1.38957 * 120.03274 * 326.35028 * 10 9 7 12 12 C 1.38162 * 120.06560 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.13691 * 359.72203 * 12 11 10 14 14 C 1.38902 * 120.06833 * 0.55244 * 13 12 11 15 15 O 1.35755 * 120.03346 * 179.72219 * 14 13 12 16 16 C 1.34833 * 117.00051 * 173.81944 * 15 14 13 17 17 H 1.07999 * 120.00115 * 354.59913 * 16 15 14 18 18 C 1.38642 * 120.00186 * 174.59376 * 16 15 14 19 19 N 1.31559 * 120.00315 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99870 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47169 * 89.99871 * 20 18 16 22 22 H 1.48497 * 109.47209 * 209.99762 * 20 18 16 23 23 H 1.48504 * 109.46894 * 329.99923 * 20 18 16 24 24 C 1.38705 * 120.03300 * 146.36828 * 10 9 7 25 25 H 1.09002 * 109.47308 * 299.99609 * 1 2 3 26 26 H 1.08997 * 109.47438 * 59.99978 * 1 2 3 27 27 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47144 * 239.99879 * 2 1 3 29 29 H 1.09002 * 109.47224 * 120.00441 * 2 1 3 30 30 H 1.08990 * 109.46924 * 60.00340 * 3 2 1 31 31 H 1.09004 * 109.46765 * 299.99956 * 3 2 1 32 32 H 1.09003 * 109.47114 * 30.00253 * 5 4 3 33 33 H 1.08995 * 109.46992 * 150.00358 * 5 4 3 34 34 H 1.09008 * 109.46691 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.46918 * 299.99847 * 6 5 4 36 36 H 1.08995 * 109.47180 * 60.00272 * 6 5 4 37 37 H 0.97005 * 119.99995 * 354.69610 * 9 7 4 38 38 H 1.07999 * 119.96592 * 359.97438 * 11 10 9 39 39 H 1.07994 * 119.92778 * 179.97438 * 12 11 10 40 40 H 1.07993 * 119.96306 * 180.27536 * 13 12 11 41 41 H 0.97007 * 119.99795 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.07067 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2678 6 6 4.4931 2.8847 1.7096 7 6 4.1783 1.4426 -1.1681 8 8 3.5699 1.4433 -2.2208 9 7 5.5261 1.4431 -1.1687 10 6 6.2254 1.3311 -2.3757 11 6 5.7058 0.5651 -3.4121 12 6 6.3958 0.4537 -4.6038 13 6 7.6014 1.1078 -4.7712 14 6 8.1288 1.8704 -3.7369 15 8 9.3161 2.5081 -3.9001 16 6 9.7093 3.3329 -2.9086 17 1 9.0498 3.5295 -2.0762 18 6 10.9603 3.9285 -2.9574 19 7 11.3442 4.7328 -1.9897 20 14 12.1009 3.5890 -4.3974 21 1 11.8574 4.5886 -5.4681 22 1 13.5118 3.6829 -3.9441 23 1 11.8400 2.2254 -4.9246 24 6 7.4381 1.9844 -2.5386 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.6492 0.9283 2.0277 33 1 5.1903 0.9285 1.1370 34 1 5.0389 2.8846 2.6531 35 1 5.0819 3.3986 0.9498 36 1 3.5408 3.3985 1.8404 37 1 6.0115 1.5210 -0.3324 38 1 4.7619 0.0557 -3.2855 39 1 5.9901 -0.1426 -5.4076 40 1 8.1363 1.0223 -5.7054 41 1 12.2197 5.1493 -2.0237 42 1 7.8439 2.5805 -1.7346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746663680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:22:21 Heat of formation + Delta-G solvation = -47.856418 kcal Electronic energy + Delta-G solvation = -23260.324229 eV Core-core repulsion = 19819.667147 eV Total energy + Delta-G solvation = -3440.657082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -41.91338 -40.67029 -38.61008 -37.28134 -35.93197 -34.50898 -34.25236 -31.37187 -31.02985 -30.29659 -27.36293 -26.94553 -24.59076 -23.56746 -23.40047 -22.39506 -20.87520 -19.93303 -19.48433 -18.91046 -17.60536 -17.04877 -16.66041 -16.54858 -15.92557 -15.89670 -15.72217 -15.46192 -15.23540 -14.85514 -14.69481 -14.48758 -14.18661 -13.97858 -13.59285 -13.33194 -13.19565 -12.90303 -12.80535 -12.75341 -12.56070 -12.38983 -12.21977 -12.14802 -12.04019 -11.59324 -11.54327 -11.30209 -11.13157 -10.81951 -9.81626 -9.36869 -8.88865 -8.49342 -6.22152 0.42038 0.65525 1.33673 1.37946 1.48693 1.54193 2.00016 2.29586 2.75238 2.78855 3.09958 3.12495 3.91280 4.00343 4.05191 4.10721 4.28912 4.30864 4.37940 4.42182 4.44521 4.53261 4.61543 4.66672 4.72678 4.84410 4.87865 4.91581 4.94649 5.16149 5.19626 5.28806 5.32656 5.35647 5.38489 5.49604 5.61183 5.63793 5.74886 5.85350 5.93122 6.22650 6.75765 6.85124 7.38549 7.58184 8.62053 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.003621 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.108331 B = 7729.924401 C = 8754.900775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.129 3.871 4 N -0.620 5.620 5 C 0.098 3.902 6 C -0.173 4.173 7 C 0.700 3.300 8 O -0.608 6.608 9 N -0.678 5.678 10 C 0.200 3.800 11 C -0.192 4.192 12 C -0.051 4.051 13 C -0.203 4.203 14 C 0.143 3.857 15 O -0.239 6.239 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.261 1.261 24 C -0.257 4.257 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.128 0.872 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.285 0.715 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.440 -9.616 8.166 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.007 3.993 4 N -0.355 5.355 5 C -0.024 4.024 6 C -0.231 4.231 7 C 0.402 3.598 8 O -0.487 6.487 9 N -0.327 5.327 10 C 0.105 3.895 11 C -0.213 4.213 12 C -0.069 4.069 13 C -0.223 4.223 14 C 0.093 3.907 15 O -0.146 6.146 16 C -0.474 4.474 17 H 0.098 0.902 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.279 4.279 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.253 0.747 38 H 0.146 0.854 39 H 0.177 0.823 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.624 -9.490 7.415 21.346 hybrid contribution 0.995 0.530 0.240 1.152 sum -16.630 -8.960 7.656 20.382 Atomic orbital electron populations 1.21660 0.93777 1.02439 1.02388 1.21836 0.97201 0.96400 1.01779 1.21572 0.76494 0.97710 1.03523 1.47354 1.07374 1.76668 1.04131 1.21822 0.97612 0.98003 0.84970 1.22239 1.02596 0.96250 1.02047 1.16058 0.81236 0.77649 0.84838 1.90893 1.68003 1.58409 1.31432 1.42700 1.05148 1.76202 1.08628 1.17278 0.90824 0.94633 0.86808 1.20906 1.02143 1.03691 0.94553 1.20971 0.92219 0.96718 0.97026 1.20529 0.99055 1.03983 0.98696 1.19320 0.85699 0.91935 0.93775 1.83557 1.33094 1.54112 1.43836 1.20668 1.02360 1.22390 1.02013 0.90216 1.25250 0.97761 0.95149 1.00466 1.69726 1.22209 1.30785 1.33542 0.85235 0.77396 0.79798 0.78428 1.19219 1.19282 1.18495 1.20839 0.99071 1.08240 0.99724 0.90917 0.93257 0.91957 0.94296 0.90609 0.87484 0.92037 0.86562 0.90535 0.89258 0.94836 0.91467 0.74739 0.85433 0.82277 0.84632 0.90581 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.91 71.98 0.71 -1.10 16 2 C -0.13 -2.16 6.26 30.59 0.19 -1.97 16 3 C 0.13 2.35 5.41 86.38 0.47 2.82 16 4 N -0.62 -13.58 2.47 -839.83 -2.08 -15.65 16 5 C 0.10 1.45 5.85 86.38 0.51 1.95 16 6 C -0.17 -2.65 10.24 71.98 0.74 -1.91 16 7 C 0.70 22.08 8.01 179.06 1.43 23.52 16 8 O -0.61 -23.57 13.63 -3.99 -0.05 -23.63 16 9 N -0.68 -21.86 5.17 -317.23 -1.64 -23.50 16 10 C 0.20 7.83 6.27 38.13 0.24 8.07 16 11 C -0.19 -7.12 8.65 22.42 0.19 -6.93 16 12 C -0.05 -1.75 10.03 22.24 0.22 -1.52 16 13 C -0.20 -8.04 9.99 22.41 0.22 -7.82 16 14 C 0.14 6.80 6.64 22.56 0.15 6.95 16 15 O -0.24 -12.96 8.58 -22.82 -0.20 -13.15 16 16 C -0.40 -23.30 9.90 67.92 0.67 -22.62 16 17 H 0.08 4.88 5.53 -2.91 -0.02 4.86 16 18 C 0.01 0.71 5.49 84.83 0.47 1.17 16 19 N -0.92 -54.50 13.96 21.61 0.30 -54.20 16 20 Si 0.97 45.15 28.62 68.60 1.96 47.11 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 24 C -0.26 -11.60 9.04 22.51 0.20 -11.39 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.26 8.07 -2.39 -0.02 1.25 16 31 H 0.06 1.43 7.42 -2.39 -0.02 1.42 16 32 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 33 H 0.08 1.13 6.45 -2.39 -0.02 1.12 16 34 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.41 11.24 6.63 -92.70 -0.61 10.63 16 38 H 0.13 4.66 6.44 -2.91 -0.02 4.64 16 39 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 42 H 0.12 5.64 5.71 -2.91 -0.02 5.62 16 Total: -1.00 -72.06 349.34 5.13 -66.93 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.41 Total: 26.88 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 6.42 Total: -10.79 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.42 Total: -93.35 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -0.25 Total: -36.78 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.96 Total: 47.11 kcal Total: -72.06 5.13 -66.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746663680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.072 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.06 seconds