Wall clock time and date at job start Tue Mar 31 2020 07:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 N 1.46494 * 109.47398 * 180.02562 * 3 2 1 5 5 N 1.39934 * 125.74362 * 269.69726 * 4 3 2 6 6 C 1.30434 * 108.91941 * 179.80757 * 5 4 3 7 7 C 1.41340 * 108.01084 * 0.43981 * 6 5 4 8 8 C 1.47284 * 126.42491 * 179.68576 * 7 6 5 9 9 O 1.21531 * 120.00018 * 174.05680 * 8 7 6 10 10 O 1.34751 * 120.00108 * 354.05744 * 8 7 6 11 11 C 1.45206 * 117.00398 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47444 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47200 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00499 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47413 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47360 * 120.00411 * 17 15 13 20 20 H 1.48505 * 109.47202 * 239.99881 * 17 15 13 21 21 C 1.34229 * 125.74805 * 89.99435 * 4 3 2 22 22 C 1.50697 * 126.29099 * 359.97438 * 21 4 3 23 23 C 1.52998 * 117.50038 * 128.80053 * 22 21 4 24 24 C 1.53000 * 117.50330 * 60.14037 * 22 21 4 25 25 H 1.09003 * 109.46951 * 299.99926 * 1 2 3 26 26 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47568 * 60.00142 * 1 2 3 28 28 H 1.09000 * 109.47568 * 119.99858 * 2 1 3 29 29 H 1.09001 * 109.47419 * 239.99848 * 2 1 3 30 30 H 1.09006 * 109.47156 * 300.00187 * 3 2 1 31 31 H 1.09001 * 109.47065 * 59.99631 * 3 2 1 32 32 H 1.07996 * 125.99083 * 180.15616 * 6 5 4 33 33 H 1.09001 * 109.46327 * 300.00123 * 11 10 8 34 34 H 1.08998 * 109.47026 * 59.99850 * 11 10 8 35 35 H 1.09010 * 109.47194 * 299.99617 * 12 11 10 36 36 H 1.08998 * 109.47261 * 59.99286 * 12 11 10 37 37 H 0.96999 * 120.00840 * 180.02562 * 16 15 13 38 38 H 1.09007 * 115.54732 * 274.46920 * 22 21 4 39 39 H 1.08998 * 117.49564 * 359.97438 * 23 22 21 40 40 H 1.09004 * 117.49822 * 145.01569 * 23 22 21 41 41 H 1.09003 * 117.50132 * 214.98375 * 24 22 21 42 42 H 1.09001 * 117.49599 * 359.97380 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3228 1.4484 1.1348 6 6 5.5712 1.4424 0.7568 7 6 5.5999 1.4426 -0.6563 8 6 6.8025 1.4434 -1.5066 9 8 6.6944 1.3345 -2.7122 10 8 8.0227 1.5648 -0.9478 11 6 9.1631 1.5583 -1.8467 12 6 10.4523 1.7046 -1.0360 13 6 11.6358 1.6972 -1.9688 14 1 11.4837 1.5977 -3.0334 15 6 12.9129 1.8175 -1.4632 16 7 13.0983 1.9382 -0.1668 17 14 14.3800 1.8076 -2.6194 18 1 13.9062 1.6603 -4.0191 19 1 15.1272 3.0835 -2.4820 20 1 15.2730 0.6717 -2.2764 21 6 4.2887 1.4426 -1.0903 22 6 3.8233 1.4421 -2.5237 23 6 4.4136 2.4998 -3.4584 24 6 2.9621 2.6186 -2.9873 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 6.4318 1.4423 1.4091 33 1 9.1856 0.6183 -2.3980 34 1 9.0780 2.3887 -2.5476 35 1 10.4300 2.6445 -0.4843 36 1 10.5371 0.8740 -0.3353 37 1 13.9966 2.0232 0.1889 38 1 3.6057 0.4615 -2.9469 39 1 5.1382 3.1963 -3.0365 40 1 4.5840 2.2151 -4.4967 41 1 2.1780 2.4121 -3.7158 42 1 2.7316 3.3928 -2.2555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766171735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:06 Heat of formation + Delta-G solvation = -3.520121 kcal Electronic energy + Delta-G solvation = -22931.155318 eV Core-core repulsion = 19492.420802 eV Total energy + Delta-G solvation = -3438.734515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65656 -39.31114 -37.23794 -35.88847 -35.55096 -33.27643 -31.85937 -30.55037 -29.93843 -27.00944 -25.09855 -23.90045 -22.85070 -22.31706 -22.14167 -20.97580 -20.37012 -19.24430 -17.68778 -16.67466 -16.20255 -15.82484 -15.76257 -15.49525 -15.19847 -14.99017 -14.59254 -14.44221 -13.87761 -13.51364 -13.02133 -12.81822 -12.58123 -12.44346 -12.32747 -12.14947 -11.82256 -11.69844 -11.37183 -11.29918 -11.15237 -10.95972 -10.78485 -10.63866 -10.60523 -10.35653 -9.98418 -9.54043 -9.53357 -9.49712 -9.22676 -8.70971 -8.40128 -6.06257 -4.10063 1.36473 2.10573 2.16588 3.30204 3.35109 3.39045 3.45041 3.51115 3.54952 4.12050 4.22519 4.38189 4.43626 4.63827 4.65323 4.71473 4.79063 4.99066 4.99742 5.07584 5.21649 5.25766 5.30370 5.34877 5.43076 5.52868 5.61747 5.70302 5.75429 5.87157 5.91594 6.03860 6.19699 6.21940 6.41944 6.67418 6.73200 7.14471 7.48343 7.63529 7.69688 7.93008 8.27699 8.46800 8.95965 9.54028 11.05370 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.002920 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.097295 B = 9587.750282 C =10230.038005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.128 3.872 4 N -0.355 5.355 5 N -0.302 5.302 6 C 0.105 3.895 7 C -0.269 4.269 8 C 0.533 3.467 9 O -0.519 6.519 10 O -0.355 6.355 11 C 0.079 3.921 12 C 0.024 3.976 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.186 3.814 22 C -0.106 4.106 23 C -0.117 4.117 24 C -0.185 4.185 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.200 0.800 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.544 -0.970 -1.215 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.007 3.993 4 N -0.134 5.134 5 N -0.120 5.120 6 C -0.083 4.083 7 C -0.281 4.281 8 C 0.378 3.622 9 O -0.410 6.410 10 O -0.271 6.271 11 C 0.007 3.993 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.054 3.946 22 C -0.126 4.126 23 C -0.155 4.155 24 C -0.222 4.222 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.217 0.783 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -27.339 -0.969 -0.392 27.359 hybrid contribution 1.550 -0.119 -1.189 1.957 sum -25.789 -1.088 -1.581 25.860 Atomic orbital electron populations 1.21689 0.94114 1.02596 1.02245 1.21925 0.96794 0.95582 1.03651 1.21928 0.73664 0.98896 1.04822 1.48494 1.06692 1.55020 1.03153 1.77242 1.01935 1.25844 1.07001 1.24268 0.95185 0.94898 0.93918 1.19215 0.90746 1.24696 0.93485 1.19885 0.83368 0.73020 0.85919 1.90781 1.87571 1.47185 1.15424 1.86562 1.14892 1.82638 1.42991 1.23574 0.82609 1.00818 0.92344 1.19168 0.87577 0.98731 0.95857 1.21028 0.90554 1.51173 0.93433 0.92231 1.24984 0.99061 0.94986 0.95193 1.69981 1.22001 1.49463 1.11445 0.86436 0.82327 0.77663 0.80998 1.19604 1.20879 1.20871 1.20482 0.89588 0.95303 0.89232 1.20453 1.06813 0.96788 0.88506 1.22819 0.94101 0.99225 0.99367 1.23207 0.95893 0.99258 1.03847 0.92222 0.91869 0.92241 0.90780 0.91171 0.88448 0.88412 0.78306 0.92445 0.92451 0.95377 0.95367 0.92812 0.85456 0.88365 0.87642 0.87906 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.32 16 2 C -0.14 -0.96 6.26 -26.73 -0.17 -1.13 16 3 C 0.13 0.98 6.21 -4.04 -0.03 0.96 16 4 N -0.36 -4.21 3.58 -56.59 -0.20 -4.41 16 5 N -0.30 -4.21 12.50 30.87 0.39 -3.83 16 6 C 0.10 1.53 11.87 -16.97 -0.20 1.33 16 7 C -0.27 -4.26 6.10 -105.08 -0.64 -4.90 16 8 C 0.53 10.01 7.83 34.41 0.27 10.28 16 9 O -0.52 -10.18 13.44 -19.29 -0.26 -10.44 16 10 O -0.35 -7.40 10.07 -40.63 -0.41 -7.81 16 11 C 0.08 1.80 5.41 37.15 0.20 2.00 16 12 C 0.02 0.63 5.35 -27.89 -0.15 0.48 16 13 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.19 2.45 6.43 -81.59 -0.52 1.93 16 22 C -0.11 -1.15 5.18 -91.77 -0.47 -1.62 16 23 C -0.12 -1.33 8.06 -26.70 -0.22 -1.54 16 24 C -0.18 -1.51 8.95 -26.69 -0.24 -1.75 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.58 6.33 -51.93 -0.33 0.25 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.13 1.26 8.14 -51.92 -0.42 0.83 16 39 H 0.10 1.33 7.68 -51.93 -0.40 0.93 16 40 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.74 7.90 -51.93 -0.41 0.33 16 LS Contribution 357.73 15.07 5.39 5.39 Total: -1.00 -32.59 357.73 -8.19 -40.78 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.60 Total: -2.49 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.21 Total: -7.86 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.92 Total: -34.14 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.67 Total: -18.24 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.59 -8.19 -40.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766171735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.256 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds