Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 N 1.46494 * 109.47398 * 180.02562 * 3 2 1 5 5 N 1.39934 * 125.74362 * 269.69726 * 4 3 2 6 6 C 1.30434 * 108.91941 * 179.80757 * 5 4 3 7 7 C 1.41340 * 108.01084 * 0.43981 * 6 5 4 8 8 C 1.47284 * 126.42491 * 179.68576 * 7 6 5 9 9 O 1.21531 * 120.00018 * 174.05680 * 8 7 6 10 10 O 1.34751 * 120.00108 * 354.05744 * 8 7 6 11 11 C 1.45206 * 117.00398 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47444 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47200 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00283 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00499 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47413 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47360 * 120.00411 * 17 15 13 20 20 H 1.48505 * 109.47202 * 239.99881 * 17 15 13 21 21 C 1.34229 * 125.74805 * 89.99435 * 4 3 2 22 22 C 1.50697 * 126.29099 * 359.97438 * 21 4 3 23 23 C 1.52998 * 117.50038 * 128.80053 * 22 21 4 24 24 C 1.53000 * 117.50330 * 60.14037 * 22 21 4 25 25 H 1.09003 * 109.46951 * 299.99926 * 1 2 3 26 26 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47568 * 60.00142 * 1 2 3 28 28 H 1.09000 * 109.47568 * 119.99858 * 2 1 3 29 29 H 1.09001 * 109.47419 * 239.99848 * 2 1 3 30 30 H 1.09006 * 109.47156 * 300.00187 * 3 2 1 31 31 H 1.09001 * 109.47065 * 59.99631 * 3 2 1 32 32 H 1.07996 * 125.99083 * 180.15616 * 6 5 4 33 33 H 1.09001 * 109.46327 * 300.00123 * 11 10 8 34 34 H 1.08998 * 109.47026 * 59.99850 * 11 10 8 35 35 H 1.09010 * 109.47194 * 299.99617 * 12 11 10 36 36 H 1.08998 * 109.47261 * 59.99286 * 12 11 10 37 37 H 0.96999 * 120.00840 * 180.02562 * 16 15 13 38 38 H 1.09007 * 115.54732 * 274.46920 * 22 21 4 39 39 H 1.08998 * 117.49564 * 359.97438 * 23 22 21 40 40 H 1.09004 * 117.49822 * 145.01569 * 23 22 21 41 41 H 1.09003 * 117.50132 * 214.98375 * 24 22 21 42 42 H 1.09001 * 117.49599 * 359.97380 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 7 4.3228 1.4484 1.1348 6 6 5.5712 1.4424 0.7568 7 6 5.5999 1.4426 -0.6563 8 6 6.8025 1.4434 -1.5066 9 8 6.6944 1.3345 -2.7122 10 8 8.0227 1.5648 -0.9478 11 6 9.1631 1.5583 -1.8467 12 6 10.4523 1.7046 -1.0360 13 6 11.6358 1.6972 -1.9688 14 1 11.4837 1.5977 -3.0334 15 6 12.9129 1.8175 -1.4632 16 7 13.0983 1.9382 -0.1668 17 14 14.3800 1.8076 -2.6194 18 1 13.9062 1.6603 -4.0191 19 1 15.1272 3.0835 -2.4820 20 1 15.2730 0.6717 -2.2764 21 6 4.2887 1.4426 -1.0903 22 6 3.8233 1.4421 -2.5237 23 6 4.4136 2.4998 -3.4584 24 6 2.9621 2.6186 -2.9873 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 6.4318 1.4423 1.4091 33 1 9.1856 0.6183 -2.3980 34 1 9.0780 2.3887 -2.5476 35 1 10.4300 2.6445 -0.4843 36 1 10.5371 0.8740 -0.3353 37 1 13.9966 2.0232 0.1889 38 1 3.6057 0.4615 -2.9469 39 1 5.1382 3.1963 -3.0365 40 1 4.5840 2.2151 -4.4967 41 1 2.1780 2.4121 -3.7158 42 1 2.7316 3.3928 -2.2555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766171735.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -21.253845 kcal Electronic energy + Delta-G solvation = -22931.924310 eV Core-core repulsion = 19492.420802 eV Total energy + Delta-G solvation = -3439.503507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.72674 -40.86009 -38.13867 -37.34328 -36.34905 -35.40593 -32.77155 -32.26074 -31.32301 -27.93907 -26.88469 -25.05072 -23.72221 -23.46223 -22.83293 -22.74197 -21.60928 -20.32678 -19.05811 -18.34909 -17.66614 -17.37854 -17.05891 -16.61323 -16.41974 -15.95341 -15.85663 -15.46386 -14.91681 -14.77668 -14.46619 -14.34587 -14.01334 -13.25788 -13.17559 -13.09089 -13.00839 -12.92477 -12.59679 -12.57556 -12.42175 -12.36752 -12.30507 -11.84996 -11.73168 -11.54578 -11.45375 -11.37300 -11.29086 -11.10048 -10.60439 -10.47774 -9.84563 -8.25608 -6.38619 0.23978 0.94823 1.17664 1.41876 1.42558 1.56309 1.92878 2.14386 2.42089 2.71134 3.08707 3.25395 3.41232 3.80954 3.82856 3.89401 3.91650 4.00499 4.17669 4.21949 4.28007 4.32091 4.35301 4.48927 4.53768 4.64078 4.72630 4.76192 4.80243 4.96117 5.08628 5.10689 5.12601 5.20384 5.26753 5.34067 5.35728 5.49588 5.60817 5.76065 5.78506 6.08692 6.39431 6.74815 6.91475 7.31013 8.87417 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.002920 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.097295 B = 9587.750282 C =10230.038005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.344 5.344 5 N -0.312 5.312 6 C 0.098 3.902 7 C -0.305 4.305 8 C 0.532 3.468 9 O -0.531 6.531 10 O -0.365 6.365 11 C 0.096 3.904 12 C 0.031 3.969 13 C -0.547 4.547 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.928 5.928 17 Si 0.974 3.026 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.201 3.799 22 C -0.119 4.119 23 C -0.142 4.142 24 C -0.144 4.144 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.005 0.995 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.141 0.859 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.748 -0.901 -2.609 28.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.002 4.002 4 N -0.121 5.121 5 N -0.131 5.131 6 C -0.089 4.089 7 C -0.318 4.318 8 C 0.378 3.622 9 O -0.422 6.422 10 O -0.282 6.282 11 C 0.023 3.977 12 C -0.006 4.006 13 C -0.585 4.585 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.066 3.934 22 C -0.139 4.139 23 C -0.179 4.179 24 C -0.181 4.181 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.221 0.779 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.155 0.845 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.590 -0.901 -1.770 29.657 hybrid contribution 2.084 -0.138 -0.704 2.204 sum -27.506 -1.039 -2.474 27.637 Atomic orbital electron populations 1.21669 0.92052 1.03111 1.03301 1.21876 0.98427 0.94533 1.02578 1.22406 0.71026 1.00038 1.06681 1.48873 1.08016 1.53100 1.02147 1.77198 1.01772 1.26021 1.08124 1.24382 0.95825 0.95009 0.93669 1.19192 0.90681 1.28100 0.93785 1.20324 0.83152 0.72443 0.86290 1.90759 1.87514 1.48013 1.15938 1.86544 1.15479 1.83357 1.42816 1.23100 0.82136 1.00853 0.91629 1.18978 0.89627 0.96503 0.95530 1.21403 0.91547 1.51566 0.93965 0.91633 1.25985 1.02346 0.94152 0.96963 1.70106 1.23103 1.50021 1.13496 0.85261 0.78050 0.78001 0.78892 1.18524 1.20059 1.20073 1.20788 0.88789 0.93125 0.90664 1.20620 1.08301 0.98185 0.86787 1.22754 0.96177 0.99546 0.99472 1.23329 0.94496 0.96971 1.03263 0.91648 0.91677 0.90707 0.92612 0.91564 0.85857 0.87286 0.77874 0.92321 0.92247 0.97645 0.97627 0.92368 0.84120 0.91346 0.87344 0.84496 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.91 71.98 0.71 -0.18 16 2 C -0.14 -1.54 6.26 30.59 0.19 -1.35 16 3 C 0.12 1.48 6.21 86.38 0.54 2.02 16 4 N -0.34 -7.64 3.58 -332.96 -1.19 -8.83 16 5 N -0.31 -8.60 12.50 -56.25 -0.70 -9.31 16 6 C 0.10 2.94 11.87 85.66 1.02 3.96 16 7 C -0.30 -9.84 6.10 -20.16 -0.12 -9.97 16 8 C 0.53 20.61 7.83 70.20 0.55 21.16 16 9 O -0.53 -21.29 13.44 19.74 0.27 -21.03 16 10 O -0.37 -15.91 10.07 -56.62 -0.57 -16.48 16 11 C 0.10 4.52 5.41 71.98 0.39 4.91 16 12 C 0.03 1.71 5.35 29.84 0.16 1.87 16 13 C -0.55 -31.66 9.11 25.60 0.23 -31.43 16 14 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 15 C 0.00 0.25 5.46 84.66 0.46 0.71 16 16 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 17 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 C 0.20 5.11 6.43 42.16 0.27 5.38 16 22 C -0.12 -2.35 5.18 -11.54 -0.06 -2.41 16 23 C -0.14 -3.06 8.06 30.62 0.25 -2.82 16 24 C -0.14 -1.85 8.95 30.62 0.27 -1.57 16 25 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.12 0.95 6.33 -2.38 -0.02 0.93 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.20 5.60 8.06 -2.91 -0.02 5.57 16 33 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.14 2.43 8.14 -2.38 -0.02 2.42 16 39 H 0.07 1.89 7.68 -2.39 -0.02 1.87 16 40 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 1.20 7.90 -2.39 -0.02 1.18 16 Total: -1.00 -71.96 357.73 5.97 -65.98 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.00 Total: 9.35 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.86 Total: -9.72 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -1.61 Total: -74.42 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.31 Total: -37.51 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.96 5.97 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766171735.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.730 kcal (2) G-P(sol) polarization free energy of solvation -71.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds