Wall clock time and date at job start Tue Mar 31 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39029 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.39122 * 119.63988 * 4.99438 * 4 2 1 6 6 C 1.39544 * 118.92463 * 179.97438 * 5 4 2 7 7 C 1.48057 * 120.89005 * 179.97438 * 6 5 4 8 8 O 1.21433 * 119.99859 * 0.02562 * 7 6 5 9 9 O 1.34665 * 120.00326 * 180.02562 * 7 6 5 10 10 C 1.45204 * 117.00092 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47439 * 299.99935 * 11 10 9 13 13 C 1.53004 * 109.47330 * 59.99926 * 11 10 9 14 14 C 1.50703 * 109.47138 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99986 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99981 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46888 * 60.00181 * 18 16 14 20 20 H 1.48499 * 109.47101 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47342 * 300.00286 * 18 16 14 22 22 C 1.40066 * 118.22585 * 0.02562 * 6 5 4 23 23 C 1.37942 * 119.16692 * 359.97438 * 22 6 5 24 24 N 1.31920 * 121.01019 * 359.74252 * 23 22 6 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 30 30 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 31 31 H 1.08004 * 120.54029 * 0.02562 * 5 4 2 32 32 H 1.08996 * 109.47121 * 299.99576 * 10 9 7 33 33 H 1.09000 * 109.47242 * 59.99999 * 10 9 7 34 34 H 1.09001 * 109.47243 * 59.99571 * 12 11 10 35 35 H 1.08994 * 109.47225 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.46363 * 300.00287 * 12 11 10 37 37 H 1.08999 * 109.47090 * 59.99572 * 13 11 10 38 38 H 1.08995 * 109.47245 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47113 * 300.00085 * 13 11 10 40 40 H 0.97000 * 119.99890 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.41148 * 180.02562 * 22 6 5 42 42 H 1.08002 * 119.49289 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4610 -2.4021 -0.1063 6 6 2.1738 -3.6018 -0.1059 7 6 1.4739 -4.9018 -0.2157 8 8 0.2635 -4.9338 -0.3083 9 8 2.1795 -6.0488 -0.2130 10 6 1.4273 -7.2858 -0.3245 11 6 2.3922 -8.4730 -0.3046 12 6 3.3647 -8.3597 -1.4803 13 6 3.1773 -8.4702 1.0087 14 6 1.6115 -9.7569 -0.4197 15 1 0.5348 -9.7289 -0.4988 16 6 2.2718 -10.9672 -0.4242 17 7 3.5830 -11.0013 -0.3274 18 14 1.3040 -12.5587 -0.5662 19 1 0.5407 -12.5618 -1.8400 20 1 2.2405 -13.7110 -0.5470 21 1 0.3613 -12.6685 0.5760 22 6 3.5691 -3.5433 0.0023 23 6 4.1846 -2.3129 0.1032 24 7 3.4799 -1.1977 0.0940 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.4892 2.0973 0.0005 29 1 2.8242 1.3264 0.8899 30 1 2.8241 1.3265 -0.8900 31 1 0.3841 -2.4037 -0.1883 32 1 0.7343 -7.3664 0.5128 33 1 0.8684 -7.2881 -1.2603 34 1 3.9293 -7.4311 -1.3967 35 1 4.0518 -9.2057 -1.4663 36 1 2.8053 -8.3618 -2.4159 37 1 2.4845 -8.5509 1.8463 38 1 3.8650 -9.3157 1.0227 39 1 3.7420 -7.5416 1.0924 40 1 4.0475 -11.8529 -0.3302 41 1 4.1556 -4.4501 0.0058 42 1 5.2601 -2.2617 0.1865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774479336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:45 Heat of formation + Delta-G solvation = -40.590519 kcal Electronic energy + Delta-G solvation = -23148.933403 eV Core-core repulsion = 19708.591394 eV Total energy + Delta-G solvation = -3440.342009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.67114 -39.54257 -36.77942 -36.52713 -34.86855 -32.74743 -31.26151 -30.58479 -28.55018 -26.20735 -25.62621 -25.51740 -25.21077 -23.92295 -22.28888 -20.49721 -18.87476 -18.13092 -17.02625 -16.23933 -15.90237 -15.88814 -15.68098 -15.48127 -15.45292 -14.72204 -14.28196 -14.16899 -13.60273 -13.14889 -12.96597 -12.87035 -12.82928 -12.54856 -12.33968 -11.93555 -11.69861 -11.51178 -11.20694 -10.96679 -10.75033 -10.43984 -10.42455 -10.20535 -10.16530 -9.93185 -9.84196 -9.62293 -9.42549 -9.32836 -8.77949 -8.38258 -7.75147 -6.02897 -4.14690 0.68191 1.22008 2.63281 2.84535 3.09446 3.29005 3.33548 3.37336 3.86420 4.36301 4.39060 4.70045 4.80018 4.90889 5.02020 5.07859 5.12456 5.23524 5.29272 5.39653 5.40826 5.58737 5.60265 5.76198 6.04224 6.07493 6.17468 6.34932 6.44671 6.66171 6.71814 6.97226 6.98045 7.11485 7.13287 7.13392 7.38611 7.61321 7.69033 7.95555 8.04356 8.09258 8.19044 8.37776 8.84901 9.50861 10.98309 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037828 B = 0.003057 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.009978 B = 9156.992763 C = 9694.214992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.620 5.620 3 C 0.108 3.892 4 C 0.391 3.609 5 C -0.179 4.179 6 C -0.028 4.028 7 C 0.499 3.501 8 O -0.510 6.510 9 O -0.338 6.338 10 C 0.084 3.916 11 C 0.071 3.929 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.177 4.177 23 C 0.139 3.861 24 N -0.525 5.525 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.145 0.855 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.017 0.983 35 H 0.085 0.915 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.084 0.916 39 H 0.017 0.983 40 H 0.262 0.738 41 H 0.151 0.849 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 20.714 0.974 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.336 5.336 3 C -0.035 4.035 4 C 0.158 3.842 5 C -0.204 4.204 6 C -0.037 4.037 7 C 0.343 3.657 8 O -0.400 6.400 9 O -0.253 6.253 10 C 0.011 3.989 11 C 0.071 3.929 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.133 4.133 17 N -0.520 5.520 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.199 4.199 23 C -0.018 4.018 24 N -0.243 5.243 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.103 0.897 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.169 0.831 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.644 21.454 1.010 21.487 hybrid contribution -1.174 -1.738 -0.168 2.104 sum -1.818 19.716 0.841 19.817 Atomic orbital electron populations 1.21764 0.78241 1.03187 1.01762 1.46144 1.05095 1.02857 1.79483 1.21480 0.96353 0.83582 1.02049 1.18091 0.88256 0.85554 0.92345 1.21514 1.01640 0.90227 1.07059 1.19359 0.93921 0.90740 0.99688 1.21064 0.85666 0.85415 0.73588 1.90783 1.15108 1.88428 1.45647 1.86570 1.41897 1.15105 1.81716 1.23766 0.95371 0.79096 1.00619 1.18246 0.91992 0.88822 0.93857 1.21778 0.99972 1.00104 0.96919 1.21778 1.00088 1.00221 0.96678 1.20895 0.93073 0.89781 1.51415 0.92541 1.24849 0.94922 0.98863 0.94652 1.69817 1.06746 1.25723 1.49721 0.86598 0.79731 0.82594 0.78722 1.20238 1.21191 1.20244 1.22282 0.93844 1.00524 1.03249 1.22437 0.99818 0.86296 0.93199 1.67018 1.06009 1.32530 1.18745 0.92805 0.90922 0.90921 0.91340 0.92426 0.92619 0.83760 0.92330 0.92334 0.96394 0.89677 0.95817 0.95811 0.89687 0.96406 0.92815 0.83096 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 10.02 59.85 0.60 1.29 16 2 N -0.62 -6.28 3.39 -189.68 -0.64 -6.93 16 3 C 0.11 0.86 10.18 59.85 0.61 1.46 16 4 C 0.39 5.00 7.37 -155.07 -1.14 3.86 16 5 C -0.18 -2.47 8.75 -38.77 -0.34 -2.81 16 6 C -0.03 -0.43 5.90 -104.70 -0.62 -1.05 16 7 C 0.50 9.25 7.92 34.76 0.28 9.53 16 8 O -0.51 -10.40 16.23 -19.22 -0.31 -10.71 16 9 O -0.34 -6.77 8.23 -40.40 -0.33 -7.10 16 10 C 0.08 1.86 4.27 37.16 0.16 2.02 16 11 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 12 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 13 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 14 C -0.51 -13.65 8.01 -34.44 -0.28 -13.93 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 17 N -0.88 -23.81 9.35 55.43 0.52 -23.29 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.18 -2.36 9.70 -39.00 -0.38 -2.74 16 23 C 0.14 1.63 11.16 -17.62 -0.20 1.43 16 24 N -0.52 -6.74 9.54 -12.48 -0.12 -6.86 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 27 H 0.07 0.57 6.39 -51.93 -0.33 0.24 16 28 H 0.07 0.36 7.79 -51.93 -0.40 -0.04 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.88 5.95 -52.48 -0.31 1.57 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 35 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 40 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.15 1.95 7.71 -52.49 -0.40 1.55 16 42 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -29.94 347.19 -7.78 -37.72 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.21 Total: -0.64 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.89 Total: -3.15 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.24 Total: -37.08 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.64 Total: -17.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.94 -7.78 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774479336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.873 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds