Wall clock time and date at job start Tue Mar 31 2020 06:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39029 * 120.00249 * 180.02562 * 2 1 3 5 5 C 1.39122 * 119.63988 * 4.99438 * 4 2 1 6 6 C 1.39544 * 118.92463 * 179.97438 * 5 4 2 7 7 C 1.48057 * 120.89005 * 179.97438 * 6 5 4 8 8 O 1.21433 * 119.99859 * 0.02562 * 7 6 5 9 9 O 1.34665 * 120.00326 * 180.02562 * 7 6 5 10 10 C 1.45204 * 117.00092 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47439 * 299.99935 * 11 10 9 13 13 C 1.53004 * 109.47330 * 59.99926 * 11 10 9 14 14 C 1.50703 * 109.47138 * 179.97438 * 11 10 9 15 15 H 1.07999 * 120.00026 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99986 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99981 * 0.02562 * 16 14 11 18 18 Si 1.86804 * 119.99982 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.46888 * 60.00181 * 18 16 14 20 20 H 1.48499 * 109.47101 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47342 * 300.00286 * 18 16 14 22 22 C 1.40066 * 118.22585 * 0.02562 * 6 5 4 23 23 C 1.37942 * 119.16692 * 359.97438 * 22 6 5 24 24 N 1.31920 * 121.01019 * 359.74252 * 23 22 6 25 25 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 26 26 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 28 28 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 30 30 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 31 31 H 1.08004 * 120.54029 * 0.02562 * 5 4 2 32 32 H 1.08996 * 109.47121 * 299.99576 * 10 9 7 33 33 H 1.09000 * 109.47242 * 59.99999 * 10 9 7 34 34 H 1.09001 * 109.47243 * 59.99571 * 12 11 10 35 35 H 1.08994 * 109.47225 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.46363 * 300.00287 * 12 11 10 37 37 H 1.08999 * 109.47090 * 59.99572 * 13 11 10 38 38 H 1.08995 * 109.47245 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.47113 * 300.00085 * 13 11 10 40 40 H 0.97000 * 119.99890 * 179.97438 * 17 16 14 41 41 H 1.08000 * 120.41148 * 180.02562 * 22 6 5 42 42 H 1.08002 * 119.49289 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2040 -0.0005 5 6 1.4610 -2.4021 -0.1063 6 6 2.1738 -3.6018 -0.1059 7 6 1.4739 -4.9018 -0.2157 8 8 0.2635 -4.9338 -0.3083 9 8 2.1795 -6.0488 -0.2130 10 6 1.4273 -7.2858 -0.3245 11 6 2.3922 -8.4730 -0.3046 12 6 3.3647 -8.3597 -1.4803 13 6 3.1773 -8.4702 1.0087 14 6 1.6115 -9.7569 -0.4197 15 1 0.5348 -9.7289 -0.4988 16 6 2.2718 -10.9672 -0.4242 17 7 3.5830 -11.0013 -0.3274 18 14 1.3040 -12.5587 -0.5662 19 1 0.5407 -12.5618 -1.8400 20 1 2.2405 -13.7110 -0.5470 21 1 0.3613 -12.6685 0.5760 22 6 3.5691 -3.5433 0.0023 23 6 4.1846 -2.3129 0.1032 24 7 3.4799 -1.1977 0.0940 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3633 -0.8900 0.5139 28 1 1.4892 2.0973 0.0005 29 1 2.8242 1.3264 0.8899 30 1 2.8241 1.3265 -0.8900 31 1 0.3841 -2.4037 -0.1883 32 1 0.7343 -7.3664 0.5128 33 1 0.8684 -7.2881 -1.2603 34 1 3.9293 -7.4311 -1.3967 35 1 4.0518 -9.2057 -1.4663 36 1 2.8053 -8.3618 -2.4159 37 1 2.4845 -8.5509 1.8463 38 1 3.8650 -9.3157 1.0227 39 1 3.7420 -7.5416 1.0924 40 1 4.0475 -11.8529 -0.3302 41 1 4.1556 -4.4501 0.0058 42 1 5.2601 -2.2617 0.1865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774479336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:41 Heat of formation + Delta-G solvation = -55.486526 kcal Electronic energy + Delta-G solvation = -23149.579342 eV Core-core repulsion = 19708.591394 eV Total energy + Delta-G solvation = -3440.987948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -41.87379 -40.85527 -38.35318 -37.48147 -36.65503 -33.86810 -33.20269 -31.50898 -29.23337 -27.82833 -27.56270 -27.21837 -26.37563 -25.22348 -23.26257 -21.77539 -20.74017 -19.33203 -18.26726 -17.86573 -17.43661 -17.22157 -16.97805 -16.69514 -16.40066 -16.28419 -15.24112 -15.09480 -14.90147 -14.88632 -14.59145 -14.26461 -13.71863 -13.44989 -13.34030 -13.18333 -13.15380 -13.01850 -12.83084 -12.65640 -12.59550 -12.32438 -12.14397 -11.92329 -11.75196 -11.32073 -11.25355 -11.16451 -10.83590 -10.74779 -10.59949 -10.39737 -8.59140 -8.04381 -6.22584 -0.47644 0.24831 1.44158 1.45145 1.49362 1.50267 1.56850 1.98927 2.45285 2.83410 3.19123 3.47935 3.55864 3.85462 3.99104 4.12243 4.23683 4.24751 4.37147 4.43473 4.52936 4.58508 4.64520 4.73139 4.80084 4.86398 4.87386 4.99141 5.05150 5.13999 5.20070 5.24154 5.32210 5.42941 5.49822 5.64582 5.64621 5.93728 6.08562 6.17817 6.26070 6.36972 6.60790 6.81959 7.01587 7.45365 8.95113 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037828 B = 0.003057 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.009978 B = 9156.992763 C = 9694.214992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.106 3.894 4 C 0.387 3.613 5 C -0.187 4.187 6 C -0.046 4.046 7 C 0.500 3.500 8 O -0.534 6.534 9 O -0.339 6.339 10 C 0.096 3.904 11 C 0.063 3.937 12 C -0.120 4.120 13 C -0.120 4.120 14 C -0.536 4.536 15 H 0.049 0.951 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.183 4.183 23 C 0.151 3.849 24 N -0.532 5.532 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.146 0.854 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.064 0.936 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.154 0.846 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 22.453 1.092 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.335 5.335 3 C -0.036 4.036 4 C 0.152 3.848 5 C -0.212 4.212 6 C -0.055 4.055 7 C 0.345 3.655 8 O -0.425 6.425 9 O -0.254 6.254 10 C 0.022 3.978 11 C 0.063 3.937 12 C -0.177 4.177 13 C -0.177 4.177 14 C -0.574 4.574 15 H 0.068 0.932 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.778 3.222 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.205 4.205 23 C -0.006 4.006 24 N -0.250 5.250 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.172 0.828 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.446 23.234 1.128 23.266 hybrid contribution -1.234 -2.134 -0.199 2.473 sum -1.680 21.100 0.929 21.187 Atomic orbital electron populations 1.21965 0.76807 1.04218 1.02523 1.46495 1.06193 1.02660 1.78103 1.21625 0.97035 0.83417 1.01567 1.18304 0.88441 0.86241 0.91824 1.21540 1.01779 0.90243 1.07644 1.19268 0.94868 0.89288 1.02057 1.21641 0.85580 0.85806 0.72448 1.90761 1.16200 1.88674 1.46911 1.86549 1.41705 1.15023 1.82134 1.23377 0.94678 0.79689 1.00022 1.18259 0.92307 0.89022 0.94125 1.21635 0.99491 1.00026 0.96592 1.21635 0.99590 1.00156 0.96355 1.21175 0.93066 0.91219 1.51958 0.93226 1.25493 0.95781 1.01447 0.94376 1.69927 1.07646 1.26301 1.49793 0.85717 0.78573 0.79347 0.78592 1.20033 1.20658 1.20037 1.22364 0.92919 1.01513 1.03751 1.22975 1.01303 0.85220 0.91124 1.67159 1.06024 1.32866 1.18986 0.92135 0.88123 0.91701 0.88312 0.92830 0.93099 0.83684 0.92949 0.92972 0.94672 0.91693 0.96204 0.96187 0.91704 0.94681 0.92783 0.82842 0.78360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 10.02 127.77 1.28 2.39 16 2 N -0.62 -11.27 3.39 -754.02 -2.56 -13.83 16 3 C 0.11 1.40 10.18 127.77 1.30 2.70 16 4 C 0.39 9.31 7.37 133.08 0.98 10.29 16 5 C -0.19 -5.04 8.75 22.80 0.20 -4.84 16 6 C -0.05 -1.39 5.90 -19.91 -0.12 -1.51 16 7 C 0.50 18.62 7.92 70.43 0.56 19.18 16 8 O -0.53 -22.12 16.23 20.05 0.33 -21.79 16 9 O -0.34 -13.56 8.23 -55.74 -0.46 -14.01 16 10 C 0.10 4.27 4.27 71.98 0.31 4.58 16 11 C 0.06 3.09 0.58 -52.93 -0.03 3.06 16 12 C -0.12 -5.71 8.11 71.98 0.58 -5.13 16 13 C -0.12 -5.71 8.11 71.98 0.58 -5.12 16 14 C -0.54 -28.75 8.01 25.60 0.21 -28.55 16 15 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 16 C 0.03 1.55 5.15 84.65 0.44 1.99 16 17 N -0.90 -48.69 9.35 21.45 0.20 -48.49 16 18 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 C -0.18 -4.65 9.70 22.64 0.22 -4.43 16 23 C 0.15 3.18 11.16 84.61 0.94 4.13 16 24 N -0.53 -12.57 9.54 -193.41 -1.85 -14.42 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.72 7.92 -2.39 -0.02 0.70 16 27 H 0.06 0.94 6.39 -2.38 -0.02 0.93 16 28 H 0.10 0.70 7.79 -2.39 -0.02 0.68 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.15 3.78 5.95 -2.91 -0.02 3.76 16 32 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.50 7.68 -2.39 -0.02 1.48 16 35 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 39 H 0.03 1.50 7.68 -2.39 -0.02 1.48 16 40 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 41 H 0.15 3.77 7.71 -2.91 -0.02 3.75 16 42 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -63.58 347.19 6.15 -57.43 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.01 Total: 11.85 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 7.45 Total: -1.26 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -4.20 Total: -76.74 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.13 Total: -35.81 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -63.58 6.15 -57.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774479336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.942 kcal (2) G-P(sol) polarization free energy of solvation -63.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds