Wall clock time and date at job start Tue Mar 31 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.08998 * 109.46842 * 182.85106 * 3 2 1 5 5 N 1.46900 * 109.47173 * 302.85284 * 3 2 1 6 6 C 1.46906 * 110.99670 * 277.94746 * 5 3 2 7 7 C 1.50695 * 109.46806 * 176.88499 * 6 5 3 8 8 O 1.21300 * 120.00203 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00104 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00218 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99847 * 180.02562 * 10 9 7 13 13 N 1.31417 * 119.99893 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00373 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47124 * 89.99815 * 14 12 10 16 16 H 1.48496 * 109.47510 * 210.00216 * 14 12 10 17 17 H 1.48501 * 109.47137 * 330.00244 * 14 12 10 18 18 C 1.50701 * 109.46874 * 62.85396 * 3 2 1 19 19 C 1.38163 * 120.02680 * 264.99701 * 18 3 2 20 20 C 1.38244 * 120.05844 * 180.02562 * 19 18 3 21 21 C 1.38291 * 120.10721 * 359.97438 * 20 19 18 22 22 C 1.38113 * 120.05827 * 0.02702 * 21 20 19 23 23 C 1.38707 * 120.03136 * 85.01981 * 18 3 2 24 24 O 1.35901 * 120.05440 * 359.95619 * 23 18 3 25 25 C 1.42907 * 117.00287 * 179.97438 * 24 23 18 26 26 H 1.08995 * 109.47521 * 294.73760 * 1 2 3 27 27 H 1.09007 * 109.47139 * 54.73875 * 1 2 3 28 28 H 1.08999 * 109.47195 * 174.72983 * 1 2 3 29 29 H 1.09002 * 109.47099 * 240.00023 * 2 1 3 30 30 H 1.09001 * 109.47050 * 120.00065 * 2 1 3 31 31 H 1.00904 * 110.99761 * 153.99597 * 5 3 2 32 32 H 1.08999 * 109.46998 * 296.88081 * 6 5 3 33 33 H 1.08997 * 109.46913 * 56.88428 * 6 5 3 34 34 H 0.97005 * 119.99822 * 359.97438 * 9 7 6 35 35 H 0.97002 * 119.99994 * 180.02562 * 13 12 10 36 36 H 1.08006 * 119.97012 * 0.02626 * 19 18 3 37 37 H 1.07997 * 119.94361 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.96833 * 179.74734 * 21 20 19 39 39 H 1.07998 * 120.02931 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46511 * 59.99806 * 25 24 23 41 41 H 1.08995 * 109.47213 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46579 * 300.00277 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1288 1.4429 -0.0511 5 7 1.4948 2.1546 -1.1635 6 6 2.2834 1.8723 -2.3704 7 6 1.6513 2.5567 -3.5548 8 8 0.6428 3.2145 -3.4082 9 7 2.2065 2.4379 -4.7771 10 6 1.6311 3.0601 -5.8548 11 1 0.7332 3.6458 -5.7242 12 6 2.2033 2.9371 -7.1151 13 7 1.6521 3.5339 -8.1480 14 14 3.7568 1.9247 -7.3409 15 1 3.3910 0.5173 -7.6425 16 1 4.5515 2.4814 -8.4650 17 1 4.5629 1.9703 -6.0946 18 6 1.5962 2.1322 1.2643 19 6 0.4406 2.8894 1.2697 20 6 0.0332 3.5228 2.4290 21 6 0.7805 3.3997 3.5861 22 6 1.9365 2.6439 3.5859 23 6 2.3477 2.0076 2.4235 24 8 3.4845 1.2629 2.4209 25 6 4.2084 1.1795 3.6502 26 1 -0.3634 0.4300 0.9333 27 1 -0.3634 0.5933 -0.8392 28 1 -0.3633 -1.0233 -0.0944 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4440 3.1471 -0.9887 32 1 3.2993 2.2437 -2.2357 33 1 2.3098 0.7965 -2.5437 34 1 3.0132 1.9121 -4.8944 35 1 2.0513 3.4478 -9.0279 36 1 -0.1450 2.9867 0.3674 37 1 -0.8706 4.1139 2.4313 38 1 0.4623 3.8988 4.4895 39 1 2.5200 2.5484 4.4897 40 1 3.5715 0.7392 4.4175 41 1 5.0917 0.5565 3.5102 42 1 4.5135 2.1788 3.9607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775073172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:12 Heat of formation + Delta-G solvation = -42.548209 kcal Electronic energy + Delta-G solvation = -23326.466221 eV Core-core repulsion = 19886.039321 eV Total energy + Delta-G solvation = -3440.426900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.40 seconds Orbital eigenvalues (eV) -40.53549 -38.54520 -37.73072 -36.34991 -33.93852 -32.20310 -31.57201 -30.82923 -30.21406 -27.69234 -27.02967 -25.32063 -23.73904 -22.44961 -21.96843 -19.80736 -19.33023 -18.44831 -17.99792 -16.52864 -16.40185 -15.97859 -15.56095 -15.19634 -14.91762 -14.50886 -14.39625 -14.26168 -13.87697 -13.59746 -13.17456 -12.99156 -12.68356 -12.58290 -12.36669 -12.23550 -11.93495 -11.84657 -11.61687 -11.30638 -11.20449 -11.15370 -10.99580 -10.72998 -10.55877 -10.39074 -9.93863 -9.52588 -8.91325 -8.53185 -8.24472 -8.14144 -8.04890 -6.27286 -3.78342 1.24020 1.35455 3.05902 3.09944 3.10176 3.17894 3.67353 3.80412 4.11810 4.15308 4.57988 4.73128 4.82262 4.87526 4.91288 5.02192 5.10622 5.20259 5.25637 5.28115 5.37264 5.42691 5.59446 5.65857 5.71878 5.83547 5.86145 5.95914 5.98159 6.12870 6.19311 6.22280 6.33561 6.39432 6.49720 6.72653 6.73505 7.21922 7.23719 7.62465 7.65739 8.19173 8.64595 8.99488 9.47182 9.88342 10.86003 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.003424 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.674613 B = 8175.404741 C = 8619.351899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.134 3.866 4 H 0.053 0.947 5 N -0.660 5.660 6 C 0.047 3.953 7 C 0.453 3.547 8 O -0.563 6.563 9 N -0.593 5.593 10 C -0.303 4.303 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C -0.110 4.110 19 C -0.064 4.064 20 C -0.157 4.157 21 C -0.086 4.086 22 C -0.212 4.212 23 C 0.128 3.872 24 O -0.314 6.314 25 C 0.028 3.972 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.350 0.650 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.146 0.854 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -6.070 24.522 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C 0.025 3.975 4 H 0.071 0.929 5 N -0.293 5.293 6 C -0.085 4.085 7 C 0.239 3.761 8 O -0.445 6.445 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.523 5.523 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.195 1.195 18 C -0.111 4.111 19 C -0.082 4.082 20 C -0.175 4.175 21 C -0.105 4.105 22 C -0.231 4.231 23 C 0.082 3.918 24 O -0.227 6.227 25 C -0.067 4.067 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.203 0.797 35 H 0.083 0.917 36 H 0.164 0.836 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.915 -6.154 24.084 25.164 hybrid contribution 2.176 -0.179 0.157 2.189 sum 6.092 -6.334 24.241 25.785 Atomic orbital electron populations 1.21695 0.95111 1.00707 1.02749 1.21427 0.97260 0.94265 1.01088 1.20255 0.96702 0.93986 0.86588 0.92928 1.60192 1.52974 1.15029 1.01102 1.21742 0.94766 1.01296 0.90728 1.19711 0.86975 0.85843 0.83611 1.90558 1.25783 1.43592 1.84551 1.42211 1.25918 1.47388 1.07707 1.19432 1.11203 1.28099 0.84474 0.86294 1.25032 0.98203 0.97710 0.95253 1.69626 1.40112 1.42837 0.99768 0.86674 0.83253 0.80959 0.78517 1.19618 1.20254 1.19527 1.19267 0.96248 1.02054 0.93531 1.21142 0.94427 0.93673 0.98937 1.21125 1.01087 1.02257 0.93049 1.20914 0.94069 0.97264 0.98217 1.21129 1.00493 1.04072 0.97432 1.18825 0.86587 0.92434 0.93915 1.86093 1.34934 1.66499 1.35173 1.23028 0.96082 1.01933 0.85671 0.93465 0.90377 0.94053 0.92011 0.92320 0.82914 0.93789 0.89408 0.79730 0.91677 0.83636 0.85837 0.86141 0.85800 0.92804 0.88368 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.24 37.16 0.34 -1.57 16 2 C -0.10 -1.31 5.71 -26.73 -0.15 -1.46 16 3 C 0.13 1.81 2.24 -68.86 -0.15 1.66 16 4 H 0.05 0.73 7.44 -51.93 -0.39 0.34 16 5 N -0.66 -10.43 4.08 -109.22 -0.45 -10.87 16 6 C 0.05 0.81 5.95 -4.97 -0.03 0.78 16 7 C 0.45 10.37 7.83 -10.99 -0.09 10.29 16 8 O -0.56 -15.10 15.85 5.54 0.09 -15.02 16 9 N -0.59 -14.30 5.09 -10.96 -0.06 -14.35 16 10 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 11 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 12 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 13 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 14 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 15 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 18 C -0.11 -1.41 4.31 -104.48 -0.45 -1.86 16 19 C -0.06 -0.80 7.67 -39.61 -0.30 -1.10 16 20 C -0.16 -1.70 10.04 -39.56 -0.40 -2.10 16 21 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 22 C -0.21 -2.15 9.04 -39.44 -0.36 -2.51 16 23 C 0.13 1.52 6.66 -39.22 -0.26 1.25 16 24 O -0.31 -3.48 9.63 -19.43 -0.19 -3.67 16 25 C 0.03 0.19 9.81 101.05 0.99 1.19 16 26 H 0.05 0.60 6.82 -51.93 -0.35 0.25 16 27 H 0.08 1.20 7.36 -51.93 -0.38 0.81 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.79 7.30 -51.93 -0.38 0.41 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.35 5.78 7.26 -39.29 -0.29 5.49 16 32 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.09 1.36 7.22 -51.93 -0.37 0.98 16 34 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.15 1.95 7.03 -52.48 -0.37 1.59 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.96 6.30 -52.49 -0.33 0.63 16 40 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -32.75 343.44 -6.85 -39.61 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -5.98 Total: 13.99 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.50 Total: -4.48 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.27 Total: -50.53 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.10 Total: -18.68 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.75 -6.85 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775073172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.942 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.40 seconds