Wall clock time and date at job start Tue Mar 31 2020 06:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 H 1.08998 * 109.46842 * 182.85106 * 3 2 1 5 5 N 1.46900 * 109.47173 * 302.85284 * 3 2 1 6 6 C 1.46906 * 110.99670 * 277.94746 * 5 3 2 7 7 C 1.50695 * 109.46806 * 176.88499 * 6 5 3 8 8 O 1.21300 * 120.00203 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00104 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00218 * 179.97438 * 9 7 6 11 11 H 1.07994 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99847 * 180.02562 * 10 9 7 13 13 N 1.31417 * 119.99893 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00373 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47124 * 89.99815 * 14 12 10 16 16 H 1.48496 * 109.47510 * 210.00216 * 14 12 10 17 17 H 1.48501 * 109.47137 * 330.00244 * 14 12 10 18 18 C 1.50701 * 109.46874 * 62.85396 * 3 2 1 19 19 C 1.38163 * 120.02680 * 264.99701 * 18 3 2 20 20 C 1.38244 * 120.05844 * 180.02562 * 19 18 3 21 21 C 1.38291 * 120.10721 * 359.97438 * 20 19 18 22 22 C 1.38113 * 120.05827 * 0.02702 * 21 20 19 23 23 C 1.38707 * 120.03136 * 85.01981 * 18 3 2 24 24 O 1.35901 * 120.05440 * 359.95619 * 23 18 3 25 25 C 1.42907 * 117.00287 * 179.97438 * 24 23 18 26 26 H 1.08995 * 109.47521 * 294.73760 * 1 2 3 27 27 H 1.09007 * 109.47139 * 54.73875 * 1 2 3 28 28 H 1.08999 * 109.47195 * 174.72983 * 1 2 3 29 29 H 1.09002 * 109.47099 * 240.00023 * 2 1 3 30 30 H 1.09001 * 109.47050 * 120.00065 * 2 1 3 31 31 H 1.00904 * 110.99761 * 153.99597 * 5 3 2 32 32 H 1.08999 * 109.46998 * 296.88081 * 6 5 3 33 33 H 1.08997 * 109.46913 * 56.88428 * 6 5 3 34 34 H 0.97005 * 119.99822 * 359.97438 * 9 7 6 35 35 H 0.97002 * 119.99994 * 180.02562 * 13 12 10 36 36 H 1.08006 * 119.97012 * 0.02626 * 19 18 3 37 37 H 1.07997 * 119.94361 * 180.02562 * 20 19 18 38 38 H 1.08001 * 119.96833 * 179.74734 * 21 20 19 39 39 H 1.07998 * 120.02931 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46511 * 59.99806 * 25 24 23 41 41 H 1.08995 * 109.47213 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.46579 * 300.00277 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1288 1.4429 -0.0511 5 7 1.4948 2.1546 -1.1635 6 6 2.2834 1.8723 -2.3704 7 6 1.6513 2.5567 -3.5548 8 8 0.6428 3.2145 -3.4082 9 7 2.2065 2.4379 -4.7771 10 6 1.6311 3.0601 -5.8548 11 1 0.7332 3.6458 -5.7242 12 6 2.2033 2.9371 -7.1151 13 7 1.6521 3.5339 -8.1480 14 14 3.7568 1.9247 -7.3409 15 1 3.3910 0.5173 -7.6425 16 1 4.5515 2.4814 -8.4650 17 1 4.5629 1.9703 -6.0946 18 6 1.5962 2.1322 1.2643 19 6 0.4406 2.8894 1.2697 20 6 0.0332 3.5228 2.4290 21 6 0.7805 3.3997 3.5861 22 6 1.9365 2.6439 3.5859 23 6 2.3477 2.0076 2.4235 24 8 3.4845 1.2629 2.4209 25 6 4.2084 1.1795 3.6502 26 1 -0.3634 0.4300 0.9333 27 1 -0.3634 0.5933 -0.8392 28 1 -0.3633 -1.0233 -0.0944 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.4440 3.1471 -0.9887 32 1 3.2993 2.2437 -2.2357 33 1 2.3098 0.7965 -2.5437 34 1 3.0132 1.9121 -4.8944 35 1 2.0513 3.4478 -9.0279 36 1 -0.1450 2.9867 0.3674 37 1 -0.8706 4.1139 2.4313 38 1 0.4623 3.8988 4.4895 39 1 2.5200 2.5484 4.4897 40 1 3.5715 0.7392 4.4175 41 1 5.0917 0.5565 3.5102 42 1 4.5135 2.1788 3.9607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775073172.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:10 Heat of formation + Delta-G solvation = -65.598551 kcal Electronic energy + Delta-G solvation = -23327.465759 eV Core-core repulsion = 19886.039321 eV Total energy + Delta-G solvation = -3441.426438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.10 seconds Orbital eigenvalues (eV) -41.37335 -40.26786 -38.70594 -37.41505 -35.96802 -33.78586 -33.34908 -31.72686 -31.00831 -28.81889 -27.97995 -26.70945 -25.33118 -23.38459 -22.80892 -21.28639 -20.79731 -20.27125 -18.95457 -17.88521 -17.25659 -17.19948 -16.68613 -16.62563 -16.22724 -15.67288 -15.41416 -15.37086 -15.25123 -14.96369 -14.53715 -14.29640 -14.21742 -13.81024 -13.57592 -13.39463 -13.21639 -12.92510 -12.82889 -12.45572 -12.40599 -12.15422 -12.04642 -11.97662 -11.95433 -11.75833 -11.50217 -11.33703 -10.42316 -10.23367 -9.75655 -9.32844 -9.05342 -8.40463 -6.01019 0.40246 0.52382 1.30740 1.36109 1.44692 1.97196 2.23635 2.42494 2.69583 2.85148 3.15829 3.40591 3.69307 3.99974 4.12861 4.15717 4.18023 4.32806 4.37292 4.43278 4.45381 4.48430 4.53638 4.56076 4.61519 4.75642 4.78812 4.90035 5.07578 5.09829 5.20134 5.33946 5.36405 5.48916 5.55084 5.61514 5.65436 5.89886 5.93871 6.11157 6.36094 6.50553 6.61127 6.89239 7.41057 7.97778 8.77303 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023570 B = 0.003424 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.674613 B = 8175.404741 C = 8619.351899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.141 3.859 4 H 0.055 0.945 5 N -0.669 5.669 6 C 0.061 3.939 7 C 0.452 3.548 8 O -0.610 6.610 9 N -0.592 5.592 10 C -0.328 4.328 11 H 0.056 0.944 12 C -0.015 4.015 13 N -0.935 5.935 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.275 1.275 17 H -0.233 1.233 18 C -0.128 4.128 19 C -0.078 4.078 20 C -0.166 4.166 21 C -0.083 4.083 22 C -0.212 4.212 23 C 0.121 3.879 24 O -0.331 6.331 25 C 0.019 3.981 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.343 0.657 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.389 0.611 35 H 0.279 0.721 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -7.977 27.032 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C 0.032 3.968 4 H 0.073 0.927 5 N -0.302 5.302 6 C -0.071 4.071 7 C 0.240 3.760 8 O -0.494 6.494 9 N -0.234 5.234 10 C -0.457 4.457 11 H 0.074 0.926 12 C -0.213 4.213 13 N -0.576 5.576 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.156 1.156 18 C -0.129 4.129 19 C -0.097 4.097 20 C -0.184 4.184 21 C -0.101 4.101 22 C -0.230 4.230 23 C 0.075 3.925 24 O -0.245 6.245 25 C -0.075 4.075 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.224 0.776 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.832 -8.078 26.629 28.654 hybrid contribution 1.163 0.487 -0.518 1.363 sum 7.995 -7.591 26.112 28.343 Atomic orbital electron populations 1.21597 0.95692 1.00724 1.01534 1.21421 0.96631 0.93963 1.01690 1.20222 0.96583 0.94038 0.85947 0.92720 1.60187 1.53496 1.14843 1.01712 1.21650 0.95287 1.01841 0.88321 1.20884 0.86026 0.84437 0.84643 1.90540 1.28007 1.45393 1.85453 1.42029 1.26641 1.47696 1.07026 1.19015 1.10467 1.29304 0.86906 0.92617 1.26101 1.02616 0.98713 0.93905 1.69807 1.42534 1.44584 1.00672 0.85371 0.77461 0.78771 0.79963 1.18130 1.19969 1.15604 1.19233 0.96887 1.02965 0.93818 1.21040 0.94764 0.94883 0.98971 1.21332 1.01832 1.02260 0.93020 1.21264 0.93546 0.96643 0.98685 1.21462 1.00595 1.03126 0.97831 1.18919 0.86881 0.92718 0.93983 1.86061 1.34736 1.66277 1.37387 1.23316 0.96514 1.03045 0.84652 0.93498 0.93077 0.93017 0.91727 0.91230 0.83706 0.91023 0.86947 0.77552 0.91160 0.85685 0.84691 0.83307 0.83182 0.91598 0.86663 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.24 71.98 0.66 -2.91 16 2 C -0.10 -2.38 5.71 30.59 0.17 -2.20 16 3 C 0.14 3.65 2.24 44.17 0.10 3.75 16 4 H 0.05 1.40 7.44 -2.39 -0.02 1.38 16 5 N -0.67 -21.07 4.08 -499.46 -2.04 -23.11 16 6 C 0.06 2.00 5.95 85.55 0.51 2.50 16 7 C 0.45 20.96 7.83 87.66 0.69 21.65 16 8 O -0.61 -34.34 15.85 -3.09 -0.05 -34.39 16 9 N -0.59 -28.57 5.09 -306.99 -1.56 -30.13 16 10 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 11 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 12 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 13 N -0.94 -57.11 13.96 21.66 0.30 -56.81 16 14 Si 0.96 39.46 27.74 68.60 1.90 41.36 16 15 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 18 C -0.13 -3.18 4.31 -19.77 -0.09 -3.27 16 19 C -0.08 -1.98 7.67 22.25 0.17 -1.81 16 20 C -0.17 -3.47 10.04 22.28 0.22 -3.24 16 21 C -0.08 -1.44 10.04 22.25 0.22 -1.21 16 22 C -0.21 -3.71 9.04 22.36 0.20 -3.50 16 23 C 0.12 2.63 6.66 22.51 0.15 2.78 16 24 O -0.33 -6.52 9.63 -92.43 -0.89 -7.41 16 25 C 0.02 0.20 9.81 113.37 1.11 1.32 16 26 H 0.05 1.19 6.82 -2.39 -0.02 1.17 16 27 H 0.05 1.60 7.36 -2.38 -0.02 1.58 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.50 7.30 -2.39 -0.02 1.48 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.34 11.63 7.26 -89.69 -0.65 10.98 16 32 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 33 H 0.11 3.16 7.22 -2.39 -0.02 3.14 16 34 H 0.39 15.62 5.76 -92.70 -0.53 15.09 16 35 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.13 3.60 7.03 -2.91 -0.02 3.58 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.15 1.76 6.30 -2.91 -0.02 1.74 16 40 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 41 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 Total: -1.00 -76.34 343.44 2.92 -73.43 By element: Atomic # 1 Polarization: 42.47 SS G_CDS: -0.20 Total: 42.26 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 5.45 Total: -5.21 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -3.30 Total: -110.05 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.94 Total: -41.80 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.90 Total: 41.36 kcal Total: -76.34 2.92 -73.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775073172.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.829 kcal (2) G-P(sol) polarization free energy of solvation -76.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.10 seconds