Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 119.99959 * 2 1 4 4 C 1.50696 * 109.46989 * 269.99295 * 3 2 1 5 5 H 1.08001 * 120.00265 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00291 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99583 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00293 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47110 * 90.00491 * 8 6 4 10 10 H 1.48502 * 109.46950 * 210.00176 * 8 6 4 11 11 H 1.48503 * 109.47067 * 330.00284 * 8 6 4 12 12 C 1.39029 * 120.00215 * 179.97438 * 2 1 3 13 13 C 1.39126 * 119.63803 * 5.00529 * 12 2 1 14 14 C 1.39536 * 118.92060 * 180.25569 * 13 12 2 15 15 C 1.48069 * 120.88725 * 179.70163 * 14 13 12 16 16 O 1.21420 * 119.99779 * 359.97438 * 15 14 13 17 17 O 1.34674 * 119.99961 * 180.02562 * 15 14 13 18 18 C 1.45196 * 116.99380 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47410 * 59.99931 * 18 17 15 20 20 C 1.53010 * 109.46562 * 179.97438 * 18 17 15 21 21 C 1.52996 * 109.47369 * 299.99333 * 18 17 15 22 22 C 1.40067 * 118.22803 * 359.43615 * 14 13 12 23 23 C 1.37943 * 119.16686 * 0.58494 * 22 14 13 24 24 N 1.31923 * 121.00825 * 359.67874 * 23 22 14 25 25 H 1.08995 * 109.46952 * 270.00375 * 1 2 3 26 26 H 1.08998 * 109.46462 * 30.00598 * 1 2 3 27 27 H 1.09000 * 109.46478 * 149.99769 * 1 2 3 28 28 H 1.08995 * 109.47206 * 29.99486 * 3 2 1 29 29 H 1.09001 * 109.47101 * 150.00065 * 3 2 1 30 30 H 0.97000 * 120.00324 * 179.97438 * 7 6 4 31 31 H 1.08002 * 120.53754 * 359.97423 * 13 12 2 32 32 H 1.09002 * 109.47505 * 59.99818 * 19 18 17 33 33 H 1.09001 * 109.46931 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.46867 * 299.99122 * 19 18 17 35 35 H 1.09001 * 109.46815 * 60.00295 * 20 18 17 36 36 H 1.09006 * 109.46610 * 179.97438 * 20 18 17 37 37 H 1.09002 * 109.46934 * 299.99883 * 20 18 17 38 38 H 1.09005 * 109.47190 * 60.00308 * 21 18 17 39 39 H 1.09001 * 109.47358 * 180.02562 * 21 18 17 40 40 H 1.09007 * 109.47137 * 300.00630 * 21 18 17 41 41 H 1.08002 * 120.41404 * 180.30296 * 22 14 13 42 42 H 1.07998 * 119.49810 * 179.70086 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0977 1.0961 -2.2417 6 6 3.1262 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4370 3.4173 -3.4340 9 1 2.3067 4.2600 -3.9004 10 1 4.6971 4.2006 -3.4966 11 1 3.5544 2.2203 -4.3050 12 6 2.1602 -1.2040 0.0005 13 6 1.4610 -2.4022 -0.1044 14 6 2.1733 -3.6020 -0.0969 15 6 1.4729 -4.9025 -0.1996 16 8 0.2626 -4.9346 -0.2913 17 8 2.1781 -6.0498 -0.1901 18 6 1.4253 -7.2870 -0.2937 19 6 0.6401 -7.2979 -1.6068 20 6 2.3899 -8.4745 -0.2668 21 6 0.4530 -7.3925 0.8829 22 6 3.5691 -3.5432 0.0046 23 6 4.1846 -2.3128 0.1050 24 7 3.4795 -1.1978 0.1004 25 1 -0.3633 0.0001 1.0276 26 1 -0.3632 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5139 28 1 1.6084 2.0284 0.5137 29 1 3.1500 1.1384 0.5138 30 1 4.0302 4.4440 -0.8504 31 1 0.3841 -2.4038 -0.1858 32 1 1.3328 -7.2229 -2.4450 33 1 0.0754 -8.2270 -1.6846 34 1 -0.0469 -6.4520 -1.6262 35 1 2.9495 -8.4669 0.6685 36 1 1.8247 -9.4034 -0.3441 37 1 3.0823 -8.3992 -1.1053 38 1 -0.2341 -6.5465 0.8635 39 1 -0.1118 -8.3215 0.8054 40 1 1.0125 -7.3847 1.8184 41 1 4.1557 -4.4500 0.0087 42 1 5.2601 -2.2615 0.1884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779429941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = -56.081077 kcal Electronic energy + Delta-G solvation = -23305.259678 eV Core-core repulsion = 19864.245949 eV Total energy + Delta-G solvation = -3441.013730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.04030 -40.93439 -38.09948 -37.50171 -35.16259 -34.75346 -33.50280 -31.37268 -29.70321 -28.37059 -28.27687 -27.07736 -26.36898 -24.64126 -23.21009 -22.17214 -20.57535 -19.00020 -18.61078 -17.95974 -17.23910 -17.07661 -16.93304 -16.62488 -16.37343 -15.77420 -15.57259 -15.30720 -14.91614 -14.70789 -14.53852 -14.33783 -13.93228 -13.37863 -13.28576 -13.17280 -13.13436 -12.96720 -12.86110 -12.82976 -12.66529 -12.52197 -12.43549 -12.24616 -12.13012 -11.79205 -11.41596 -11.21060 -10.99440 -10.67797 -10.60757 -10.22720 -8.51391 -8.05897 -6.31699 -0.33849 0.42205 1.37765 1.39203 1.47454 1.50175 1.58447 2.26394 2.43758 3.00360 3.11205 3.46350 3.67378 3.74614 3.80008 3.95779 4.02239 4.12747 4.23738 4.44905 4.55178 4.61699 4.61991 4.68440 4.75187 4.77392 4.84233 4.87730 4.89873 4.95461 5.08930 5.13814 5.17659 5.27196 5.28656 5.30228 5.44618 5.58080 5.73971 6.09289 6.23610 6.53366 6.68724 6.80790 7.32985 7.41077 8.88412 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.027092 B = 0.003336 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.285833 B = 8391.335354 C = 8535.184543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.608 5.608 3 C 0.272 3.728 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.012 3.988 7 N -0.926 5.926 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.392 3.608 13 C -0.199 4.199 14 C -0.050 4.050 15 C 0.522 3.478 16 O -0.513 6.513 17 O -0.342 6.342 18 C 0.105 3.895 19 C -0.183 4.183 20 C -0.135 4.135 21 C -0.182 4.182 22 C -0.187 4.187 23 C 0.139 3.861 24 N -0.548 5.548 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.266 0.734 31 H 0.146 0.854 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.171 0.829 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -24.088 1.571 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.318 5.318 3 C 0.151 3.849 4 C -0.575 4.575 5 H 0.064 0.936 6 C -0.187 4.187 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.157 3.843 13 C -0.225 4.225 14 C -0.059 4.059 15 C 0.367 3.633 16 O -0.403 6.403 17 O -0.259 6.259 18 C 0.069 3.931 19 C -0.240 4.240 20 C -0.192 4.192 21 C -0.239 4.239 22 C -0.210 4.210 23 C -0.020 4.020 24 N -0.266 5.266 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.164 0.836 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.188 0.812 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -3.254 -22.981 1.659 23.270 hybrid contribution -0.376 0.171 -0.839 0.936 sum -3.631 -22.810 0.820 23.112 Atomic orbital electron populations 1.21771 0.77950 1.03238 1.01832 1.46970 1.06028 1.03476 1.75329 1.18752 0.91401 0.79116 0.95663 1.21681 1.36385 1.06341 0.93101 0.93642 1.25744 0.95103 0.96387 1.01434 1.70040 1.39098 1.14759 1.32731 0.85497 0.77970 0.78115 0.79679 1.19490 1.20378 1.19974 1.18469 0.88416 0.86348 0.91107 1.21457 1.01635 0.90148 1.09273 1.19280 0.94650 0.89776 1.02216 1.20924 0.85335 0.84720 0.72289 1.90715 1.15615 1.88173 1.45793 1.86589 1.41612 1.14636 1.83024 1.22616 0.92716 0.81204 0.96532 1.22489 1.01047 1.04440 0.95997 1.21883 0.98938 0.94516 1.03861 1.22480 0.99755 1.04332 0.97293 1.22244 0.92965 1.00483 1.05305 1.23021 1.01051 0.86047 0.91835 1.67202 1.07097 1.33772 1.18527 0.91951 0.91176 0.90381 0.97036 0.96152 0.92467 0.83609 0.91772 0.88652 0.92353 0.90970 0.87993 0.91108 0.92307 0.88688 0.91591 0.81157 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.31 10.28 127.77 1.31 4.63 16 2 N -0.61 -27.27 2.97 -733.28 -2.18 -29.45 16 3 C 0.27 14.67 5.22 85.63 0.45 15.12 16 4 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 5 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 6 C 0.01 0.70 5.46 84.65 0.46 1.17 16 7 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 8 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.39 16.58 7.37 133.08 0.98 17.56 16 13 C -0.20 -7.11 8.84 22.80 0.20 -6.90 16 14 C -0.05 -1.57 5.90 -19.91 -0.12 -1.69 16 15 C 0.52 14.97 7.23 70.43 0.51 15.48 16 16 O -0.51 -16.11 11.98 20.09 0.24 -15.87 16 17 O -0.34 -8.05 9.24 -55.84 -0.52 -8.57 16 18 C 0.10 1.88 1.13 -10.79 -0.01 1.87 16 19 C -0.18 -3.28 8.37 71.98 0.60 -2.68 16 20 C -0.14 -1.53 8.85 71.99 0.64 -0.89 16 21 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 22 C -0.19 -5.18 9.70 22.64 0.22 -4.96 16 23 C 0.14 4.49 11.16 84.61 0.94 5.43 16 24 N -0.55 -23.52 9.04 -193.41 -1.75 -25.27 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 27 H 0.08 2.38 5.97 -2.39 -0.01 2.37 16 28 H 0.01 0.65 8.07 -2.39 -0.02 0.63 16 29 H 0.02 1.21 7.30 -2.39 -0.02 1.19 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.15 4.89 5.71 -2.91 -0.02 4.87 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.36 5.88 -2.38 -0.01 1.34 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.17 3.50 7.71 -2.91 -0.02 3.48 16 42 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -70.14 348.57 6.15 -63.99 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.01 Total: 12.45 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.03 Total: 10.93 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -3.64 Total: -109.90 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.28 Total: -24.44 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.14 6.15 -63.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779429941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.912 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds