Wall clock time and date at job start Tue Mar 31 2020 07:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.38426 * 119.99814 * 154.72211 * 4 2 1 6 6 C 1.39410 * 119.53685 * 0.02562 * 5 4 2 7 7 C 1.36840 * 119.38605 * 179.97438 * 6 5 4 8 8 C 1.40409 * 118.48518 * 0.02562 * 7 6 5 9 9 C 1.47407 * 120.47543 * 179.97438 * 8 7 6 10 10 O 1.21502 * 120.00359 * 359.97438 * 9 8 7 11 11 O 1.34760 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.45200 * 116.99647 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47150 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46957 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99780 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00196 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47567 * 119.99829 * 19 17 15 22 22 H 1.48498 * 109.47421 * 240.00125 * 19 17 15 23 23 C 1.39620 * 119.03898 * 359.97438 * 8 7 6 24 24 N 1.31659 * 120.51460 * 359.75525 * 23 8 7 25 25 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 29 29 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 31 31 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 32 32 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 33 33 H 1.07996 * 120.30931 * 359.95502 * 6 5 4 34 34 H 1.07990 * 120.75596 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47015 * 299.99597 * 12 11 9 36 36 H 1.08996 * 109.46969 * 59.99970 * 12 11 9 37 37 H 1.09001 * 109.46898 * 300.00090 * 13 12 11 38 38 H 1.09001 * 109.47354 * 59.99686 * 13 12 11 39 39 H 1.08996 * 109.46661 * 299.99474 * 14 13 12 40 40 H 1.08996 * 109.47091 * 59.99706 * 14 13 12 41 41 H 0.97003 * 120.00239 * 179.97438 * 18 17 15 42 42 H 1.08003 * 119.73986 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2710 -1.2795 1.1925 6 6 4.0600 -1.2091 0.0453 7 6 5.2981 -1.7919 0.0452 8 6 5.7310 -2.4451 1.2103 9 6 7.0565 -3.0882 1.2583 10 8 7.7830 -3.0560 0.2850 11 8 7.4624 -3.7120 2.3818 12 6 8.7790 -4.3237 2.3571 13 6 9.0624 -4.9788 3.7104 14 6 10.4500 -5.6228 3.6846 15 6 10.7294 -6.2675 5.0178 16 1 9.9913 -6.2221 5.8048 17 6 11.9273 -6.9154 5.2327 18 7 12.8260 -6.9712 4.2741 19 14 12.2740 -7.7140 6.8854 20 1 11.1114 -7.5110 7.7868 21 1 12.5043 -9.1684 6.6939 22 1 13.4819 -7.0969 7.4898 23 6 4.8878 -2.4765 2.3227 24 7 3.7057 -1.8981 2.2820 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.4621 -0.7386 1.9896 33 1 3.6974 -0.6997 -0.8352 34 1 5.9279 -1.7505 -0.8311 35 1 8.8135 -5.0803 1.5733 36 1 9.5308 -3.5599 2.1582 37 1 9.0278 -4.2225 4.4945 38 1 8.3106 -5.7426 3.9089 39 1 10.4850 -6.3790 2.9005 40 1 11.2016 -4.8587 3.4863 41 1 13.6689 -7.4266 4.4254 42 1 5.2091 -2.9761 3.2246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787250170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:17 Heat of formation + Delta-G solvation = -68.271908 kcal Electronic energy + Delta-G solvation = -21872.530053 eV Core-core repulsion = 18430.987689 eV Total energy + Delta-G solvation = -3441.542364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.85749 -39.70318 -37.50290 -36.30681 -33.95275 -33.17013 -32.38766 -31.65497 -29.69947 -27.81746 -27.00457 -24.52030 -24.00698 -22.92506 -21.61854 -20.72777 -20.28012 -18.40507 -17.55816 -17.17661 -16.54591 -16.19811 -15.96671 -15.51887 -15.08100 -14.87428 -14.44097 -14.28647 -13.89199 -13.68335 -13.41761 -13.19116 -12.97992 -12.79802 -12.47108 -12.16702 -12.11870 -11.95715 -11.83627 -11.60985 -10.96384 -10.67023 -10.62183 -10.60535 -10.40964 -10.33269 -10.12639 -9.71800 -9.67501 -9.46540 -9.11839 -8.36517 -8.15411 -6.01081 -4.03826 0.62326 1.09806 2.61253 2.69085 2.96358 3.32064 3.39462 3.44013 3.72439 4.16082 4.36397 4.43551 4.45921 4.53843 4.59359 4.76042 4.82786 4.99956 5.02480 5.15952 5.21003 5.29748 5.34992 5.42820 5.49761 5.64146 5.66370 5.68646 5.73848 5.91415 6.08534 6.16028 6.55927 6.57814 6.59050 6.89208 7.02898 7.08851 7.63924 7.74979 7.78017 7.97533 8.02207 8.39012 9.02796 9.60380 11.10390 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.002145 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.128075 B =13049.320808 C =13557.476805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 C -0.172 4.172 4 N -0.711 5.711 5 C 0.429 3.571 6 C -0.253 4.253 7 C 0.028 3.972 8 C -0.240 4.240 9 C 0.515 3.485 10 O -0.518 6.518 11 O -0.356 6.356 12 C 0.070 3.930 13 C -0.109 4.109 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.216 3.784 24 N -0.552 5.552 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.406 0.594 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.261 0.739 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.544 16.206 -10.475 32.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 C -0.230 4.230 4 N -0.342 5.342 5 C 0.192 3.808 6 C -0.278 4.278 7 C 0.003 3.997 8 C -0.246 4.246 9 C 0.359 3.641 10 O -0.408 6.408 11 O -0.272 6.272 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.014 4.014 15 C -0.558 4.558 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.056 3.944 24 N -0.270 5.270 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.243 0.757 33 H 0.156 0.844 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -25.738 16.216 -10.249 32.101 hybrid contribution 0.810 -0.470 0.329 0.993 sum -24.928 15.746 -9.920 31.108 Atomic orbital electron populations 1.22066 0.93623 1.02994 1.03202 1.21071 0.94658 0.92791 0.87845 1.22322 1.02193 0.95872 1.02637 1.44659 1.14894 1.57832 1.16836 1.18632 0.85930 0.86976 0.89293 1.21095 0.96580 1.10535 0.99575 1.21158 0.93837 0.88201 0.96531 1.19888 0.95669 1.10925 0.98132 1.20733 0.86237 0.75920 0.81177 1.90815 1.55630 1.57957 1.36379 1.86526 1.38061 1.64929 1.37708 1.23501 0.78885 0.96538 1.01346 1.21768 1.01134 0.99254 0.92519 1.19061 0.89035 0.95616 0.97703 1.21219 1.01542 1.34499 0.98551 0.92347 1.25035 0.96243 0.96343 0.96930 1.69977 1.07544 1.43469 1.32383 0.86493 0.78236 0.79039 0.83980 1.19663 1.21005 1.21011 1.22979 0.86021 0.88490 0.96882 1.67367 1.17506 1.15613 1.26509 0.91820 0.90616 0.91708 0.89657 0.91939 0.91311 0.92028 0.75748 0.84382 0.83671 0.91481 0.91476 0.92098 0.92091 0.96207 0.96212 0.92980 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.48 9.38 37.15 0.35 -0.13 16 2 C 0.14 0.63 2.86 -67.93 -0.19 0.44 16 3 C -0.17 -0.74 9.40 37.16 0.35 -0.39 16 4 N -0.71 -4.88 5.22 -53.96 -0.28 -5.16 16 5 C 0.43 4.21 7.62 -155.29 -1.18 3.03 16 6 C -0.25 -2.31 8.76 -39.65 -0.35 -2.66 16 7 C 0.03 0.31 9.65 -39.27 -0.38 -0.07 16 8 C -0.24 -3.17 5.89 -104.83 -0.62 -3.79 16 9 C 0.51 8.41 7.89 34.46 0.27 8.68 16 10 O -0.52 -9.68 16.20 -19.27 -0.31 -9.99 16 11 O -0.36 -6.10 9.49 -40.66 -0.39 -6.49 16 12 C 0.07 1.32 5.48 37.16 0.20 1.53 16 13 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.22 2.65 10.79 -17.11 -0.18 2.46 16 24 N -0.55 -6.49 10.38 -12.13 -0.13 -6.62 16 25 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.09 0.37 6.41 -51.93 -0.33 0.03 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.41 2.54 8.72 -40.82 -0.36 2.18 16 33 H 0.14 0.89 6.03 -52.49 -0.32 0.58 16 34 H 0.15 1.49 7.72 -52.49 -0.41 1.09 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.17 1.96 7.61 -52.48 -0.40 1.56 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -32.81 358.00 -8.82 -41.63 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -6.40 Total: -2.77 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.43 Total: -6.43 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.33 Total: -38.05 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.70 Total: -16.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.81 -8.82 -41.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787250170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.638 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds