Wall clock time and date at job start Tue Mar 31 2020 07:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47602 * 2 1 4 4 N 1.46506 * 109.47100 * 119.99752 * 2 1 3 5 5 C 1.38426 * 119.99814 * 154.72211 * 4 2 1 6 6 C 1.39410 * 119.53685 * 0.02562 * 5 4 2 7 7 C 1.36840 * 119.38605 * 179.97438 * 6 5 4 8 8 C 1.40409 * 118.48518 * 0.02562 * 7 6 5 9 9 C 1.47407 * 120.47543 * 179.97438 * 8 7 6 10 10 O 1.21502 * 120.00359 * 359.97438 * 9 8 7 11 11 O 1.34760 * 119.99605 * 179.97438 * 9 8 7 12 12 C 1.45200 * 116.99647 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46919 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47150 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46957 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99780 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00196 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47567 * 119.99829 * 19 17 15 22 22 H 1.48498 * 109.47421 * 240.00125 * 19 17 15 23 23 C 1.39620 * 119.03898 * 359.97438 * 8 7 6 24 24 N 1.31659 * 120.51460 * 359.75525 * 23 8 7 25 25 H 1.09001 * 109.47077 * 300.00924 * 1 2 3 26 26 H 1.09002 * 109.47012 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47163 * 239.99851 * 2 1 3 29 29 H 1.08995 * 109.47574 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46832 * 299.99981 * 3 2 1 31 31 H 1.09001 * 109.47659 * 59.99432 * 3 2 1 32 32 H 0.97005 * 119.99811 * 335.00008 * 4 2 1 33 33 H 1.07996 * 120.30931 * 359.95502 * 6 5 4 34 34 H 1.07990 * 120.75596 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47015 * 299.99597 * 12 11 9 36 36 H 1.08996 * 109.46969 * 59.99970 * 12 11 9 37 37 H 1.09001 * 109.46898 * 300.00090 * 13 12 11 38 38 H 1.09001 * 109.47354 * 59.99686 * 13 12 11 39 39 H 1.08996 * 109.46661 * 299.99474 * 14 13 12 40 40 H 1.08996 * 109.47091 * 59.99706 * 14 13 12 41 41 H 0.97003 * 120.00239 * 179.97438 * 18 17 15 42 42 H 1.08003 * 119.73986 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2710 -1.2795 1.1925 6 6 4.0600 -1.2091 0.0453 7 6 5.2981 -1.7919 0.0452 8 6 5.7310 -2.4451 1.2103 9 6 7.0565 -3.0882 1.2583 10 8 7.7830 -3.0560 0.2850 11 8 7.4624 -3.7120 2.3818 12 6 8.7790 -4.3237 2.3571 13 6 9.0624 -4.9788 3.7104 14 6 10.4500 -5.6228 3.6846 15 6 10.7294 -6.2675 5.0178 16 1 9.9913 -6.2221 5.8048 17 6 11.9273 -6.9154 5.2327 18 7 12.8260 -6.9712 4.2741 19 14 12.2740 -7.7140 6.8854 20 1 11.1114 -7.5110 7.7868 21 1 12.5043 -9.1684 6.6939 22 1 13.4819 -7.0969 7.4898 23 6 4.8878 -2.4765 2.3227 24 7 3.7057 -1.8981 2.2820 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.4621 -0.7386 1.9896 33 1 3.6974 -0.6997 -0.8352 34 1 5.9279 -1.7505 -0.8311 35 1 8.8135 -5.0803 1.5733 36 1 9.5308 -3.5599 2.1582 37 1 9.0278 -4.2225 4.4945 38 1 8.3106 -5.7426 3.9089 39 1 10.4850 -6.3790 2.9005 40 1 11.2016 -4.8587 3.4863 41 1 13.6689 -7.4266 4.4254 42 1 5.2091 -2.9761 3.2246 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787250170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:12 Heat of formation + Delta-G solvation = -87.018539 kcal Electronic energy + Delta-G solvation = -21873.342968 eV Core-core repulsion = 18430.987689 eV Total energy + Delta-G solvation = -3442.355279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 5.26 seconds Orbital eigenvalues (eV) -41.83921 -40.85388 -38.14835 -37.67403 -35.91401 -34.00149 -33.64463 -33.04177 -30.56906 -28.87438 -28.08557 -25.75519 -25.02411 -24.34589 -22.38136 -22.13402 -21.62421 -19.29519 -18.70248 -18.43389 -18.03974 -17.62510 -17.25130 -16.47759 -16.15975 -15.78960 -15.73333 -15.40482 -14.94703 -14.71597 -14.29966 -14.05804 -13.98462 -13.80042 -13.75866 -13.69533 -13.06243 -12.92039 -12.84424 -12.49173 -12.39355 -12.36095 -12.06238 -11.98585 -11.84868 -11.46324 -11.40913 -11.32905 -11.20988 -10.92780 -10.58053 -10.56826 -8.89092 -8.20739 -6.32014 -0.32882 0.27164 1.42187 1.42463 1.52974 1.55901 1.64632 2.01739 2.42427 2.82029 3.13123 3.49031 3.67997 3.84149 3.88199 3.93522 4.03226 4.04179 4.09815 4.14871 4.31129 4.43494 4.64466 4.75792 4.77216 4.82489 4.83630 4.90802 4.93623 4.97441 5.10121 5.15590 5.27394 5.35932 5.38655 5.42840 5.53174 5.65901 5.81772 5.92905 6.20593 6.42260 6.69438 6.84228 7.00447 7.37353 8.91676 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.041835 B = 0.002145 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.128075 B =13049.320808 C =13557.476805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 C -0.169 4.169 4 N -0.699 5.699 5 C 0.427 3.573 6 C -0.242 4.242 7 C 0.025 3.975 8 C -0.263 4.263 9 C 0.515 3.485 10 O -0.548 6.548 11 O -0.353 6.353 12 C 0.080 3.920 13 C -0.094 4.094 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.279 1.279 23 C 0.219 3.781 24 N -0.569 5.569 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.410 0.590 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.068 0.932 39 H -0.003 1.003 40 H -0.003 1.003 41 H 0.264 0.736 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.952 17.173 -10.206 34.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 C -0.227 4.227 4 N -0.328 5.328 5 C 0.189 3.811 6 C -0.267 4.267 7 C 0.000 4.000 8 C -0.270 4.270 9 C 0.362 3.638 10 O -0.440 6.440 11 O -0.270 6.270 12 C 0.006 3.994 13 C -0.131 4.131 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.574 5.574 19 Si 0.794 3.206 20 H -0.184 1.184 21 H -0.204 1.204 22 H -0.204 1.204 23 C 0.058 3.942 24 N -0.288 5.288 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.168 0.832 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.073 0.927 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -28.210 17.217 -9.986 34.524 hybrid contribution 1.382 -0.652 0.171 1.538 sum -26.828 16.565 -9.815 33.022 Atomic orbital electron populations 1.22046 0.92184 1.03071 1.04136 1.21327 0.95773 0.92730 0.86948 1.22301 1.01337 0.95681 1.03427 1.44928 1.13667 1.56382 1.17843 1.18941 0.86844 0.86305 0.89041 1.21330 0.95473 1.09563 1.00287 1.21285 0.94682 0.88047 0.95982 1.19762 0.94427 1.13022 0.99750 1.21290 0.87052 0.75182 0.80233 1.90792 1.56752 1.59334 1.37169 1.86508 1.36820 1.65149 1.38493 1.23144 0.79968 0.96365 0.99908 1.21462 0.98294 0.99434 0.93924 1.18948 0.91416 0.94570 0.96318 1.21659 1.02002 1.34728 0.99532 0.91624 1.26020 0.96015 0.96920 1.01090 1.70110 1.08122 1.44390 1.34759 0.85328 0.78398 0.77907 0.78977 1.18369 1.20409 1.20425 1.23002 0.86134 0.88341 0.96685 1.67410 1.17299 1.16541 1.27541 0.91540 0.89070 0.92052 0.88914 0.93177 0.89512 0.92343 0.75315 0.81419 0.83195 0.91900 0.91907 0.91359 0.91338 0.98446 0.98455 0.92715 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 9.38 71.98 0.68 0.21 16 2 C 0.14 0.82 2.86 44.99 0.13 0.95 16 3 C -0.17 -0.99 9.40 71.98 0.68 -0.31 16 4 N -0.70 -7.96 5.22 -324.64 -1.70 -9.66 16 5 C 0.43 7.59 7.62 133.26 1.02 8.61 16 6 C -0.24 -3.92 8.76 22.22 0.19 -3.72 16 7 C 0.03 0.53 9.65 22.47 0.22 0.75 16 8 C -0.26 -6.91 5.89 -20.00 -0.12 -7.03 16 9 C 0.52 17.12 7.89 70.24 0.55 17.67 16 10 O -0.55 -20.99 16.20 19.83 0.32 -20.67 16 11 O -0.35 -12.25 9.49 -56.71 -0.54 -12.79 16 12 C 0.08 3.07 5.48 71.98 0.39 3.47 16 13 C -0.09 -3.96 5.53 30.59 0.17 -3.79 16 14 C 0.02 1.32 4.97 29.85 0.15 1.47 16 15 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 19 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.22 5.27 10.79 85.05 0.92 6.18 16 24 N -0.57 -12.75 10.38 -192.29 -2.00 -14.74 16 25 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 27 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.09 0.47 6.41 -2.39 -0.02 0.46 16 29 H 0.05 0.44 7.67 -2.39 -0.02 0.42 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.41 4.25 8.72 -92.70 -0.81 3.44 16 33 H 0.17 1.64 6.03 -2.91 -0.02 1.62 16 34 H 0.15 2.98 7.72 -2.92 -0.02 2.96 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.77 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.18 3.97 7.61 -2.91 -0.02 3.95 16 Total: -1.00 -70.98 358.00 4.28 -66.70 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.21 Total: 7.71 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.67 Total: -6.01 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -3.41 Total: -81.50 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.22 Total: -33.46 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.98 4.28 -66.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787250170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.319 kcal (2) G-P(sol) polarization free energy of solvation -70.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.26 seconds