Wall clock time and date at job start Tue Mar 31 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08999 * 109.46803 * 304.99918 * 3 2 1 5 5 N 1.46496 * 109.47071 * 65.00170 * 3 2 1 6 6 C 1.34777 * 119.99614 * 274.99619 * 5 3 2 7 7 O 1.21588 * 120.00178 * 0.02562 * 6 5 3 8 8 N 1.34784 * 119.99964 * 180.02562 * 6 5 3 9 9 C 1.46493 * 119.99864 * 179.73002 * 8 6 5 10 10 C 1.50698 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99736 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00453 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99720 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46760 * 59.99714 * 14 12 10 16 16 H 1.48499 * 109.46931 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47111 * 299.99588 * 14 12 10 18 18 C 1.50703 * 109.47082 * 185.00232 * 3 2 1 19 19 C 1.38170 * 120.02366 * 264.71815 * 18 3 2 20 20 C 1.38246 * 120.05250 * 179.76805 * 19 18 3 21 21 C 1.38291 * 120.11157 * 0.51201 * 20 19 18 22 22 C 1.38120 * 120.05273 * 359.74394 * 21 20 19 23 23 C 1.38711 * 120.03068 * 84.99855 * 18 3 2 24 24 O 1.35896 * 120.05194 * 359.97438 * 23 18 3 25 25 C 1.42908 * 116.99436 * 179.97438 * 24 23 18 26 26 H 1.08996 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46921 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47375 * 59.99801 * 1 2 3 29 29 H 1.08997 * 109.47445 * 239.99531 * 2 1 3 30 30 H 1.09004 * 109.47160 * 119.99743 * 2 1 3 31 31 H 0.96996 * 120.00499 * 95.00197 * 5 3 2 32 32 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 33 33 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 34 34 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 35 35 H 0.96993 * 120.00028 * 180.02562 * 13 12 10 36 36 H 1.07993 * 119.97487 * 0.02980 * 19 18 3 37 37 H 1.07996 * 119.94331 * 180.25502 * 20 19 18 38 38 H 1.07999 * 119.96771 * 179.76643 * 21 20 19 39 39 H 1.08005 * 120.02114 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47099 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.47191 * 299.99659 * 25 24 23 42 42 H 1.09001 * 109.46994 * 60.00584 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3415 2.6319 0.4319 8 7 0.0788 3.2675 2.5184 9 6 -1.2421 3.8889 2.6414 10 6 -1.3890 4.4886 4.0161 11 1 -0.5794 4.4139 4.7272 12 6 -2.5571 5.1318 4.3665 13 7 -3.5431 5.2224 3.5008 14 14 -2.7394 5.8746 6.0708 15 1 -1.6878 6.9025 6.2778 16 1 -4.0783 6.5046 6.1955 17 1 -2.5968 4.8075 7.0937 18 6 3.5419 1.4442 -0.1239 19 6 4.3290 1.5205 1.0092 20 6 5.7068 1.5173 0.8965 21 6 6.3008 1.4485 -0.3504 22 6 5.5184 1.3774 -1.4864 23 6 4.1353 1.3751 -1.3758 24 8 3.3632 1.3053 -2.4919 25 6 4.0426 1.2371 -3.7474 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2719 2.1231 1.9978 32 1 0.6986 3.2937 3.2641 33 1 -1.3464 4.6723 1.8907 34 1 -2.0142 3.1347 2.4892 35 1 -4.3647 5.6751 3.7472 36 1 3.8675 1.5783 1.9838 37 1 6.3203 1.5728 1.7836 38 1 7.3774 1.4499 -0.4360 39 1 5.9828 1.3233 -2.4600 40 1 3.3112 1.1860 -4.5539 41 1 4.6613 2.1254 -3.8744 42 1 4.6732 0.3484 -3.7714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:53 Heat of formation + Delta-G solvation = -46.001609 kcal Electronic energy + Delta-G solvation = -23339.329101 eV Core-core repulsion = 19898.752450 eV Total energy + Delta-G solvation = -3440.576651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.64610 -39.24194 -37.61973 -35.71505 -33.94650 -32.49786 -31.50432 -31.09722 -30.26950 -27.61936 -27.08187 -25.70150 -22.79116 -22.27229 -22.20348 -20.63151 -19.86720 -18.57195 -17.75567 -16.51020 -16.30348 -15.93222 -15.69568 -15.24790 -15.10434 -14.75178 -14.56385 -13.85158 -13.76291 -13.66709 -13.29988 -12.96364 -12.83252 -12.37052 -12.27307 -11.89563 -11.84807 -11.62889 -11.39495 -11.33715 -11.17775 -10.92910 -10.84187 -10.65205 -10.48696 -10.24237 -9.32911 -9.25814 -9.06748 -8.66242 -8.60136 -8.27489 -7.67490 -6.10514 -4.16767 1.10942 1.25116 3.09055 3.28929 3.32621 3.34434 3.43732 3.59156 4.06350 4.36960 4.49180 4.61071 4.78759 4.86749 4.91732 5.08315 5.11999 5.25346 5.26233 5.27488 5.35353 5.40273 5.47492 5.65071 5.84528 5.94202 6.10135 6.16593 6.25795 6.30019 6.34687 6.52733 6.56655 6.89152 7.02534 7.18855 7.22118 7.59407 7.62841 7.64321 7.98191 8.11319 8.82583 9.03109 9.41516 9.56213 10.99720 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003306 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.962056 B = 8466.702282 C = 9071.524717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.214 3.786 4 H 0.100 0.900 5 N -0.753 5.753 6 C 0.694 3.306 7 O -0.593 6.593 8 N -0.731 5.731 9 C 0.269 3.731 10 C -0.541 4.541 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.114 4.114 19 C -0.078 4.078 20 C -0.153 4.153 21 C -0.086 4.086 22 C -0.207 4.207 23 C 0.136 3.864 24 O -0.309 6.309 25 C 0.027 3.973 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.387 0.613 32 H 0.385 0.615 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.266 0.734 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.629 -10.253 -9.441 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.108 3.892 4 H 0.118 0.882 5 N -0.412 5.412 6 C 0.394 3.606 7 O -0.471 6.471 8 N -0.384 5.384 9 C 0.147 3.853 10 C -0.580 4.580 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.171 4.171 21 C -0.104 4.104 22 C -0.225 4.225 23 C 0.090 3.910 24 O -0.222 6.222 25 C -0.068 4.068 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.216 0.784 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.422 -10.175 -10.351 24.246 hybrid contribution 0.782 0.478 1.466 1.729 sum 20.204 -9.697 -8.885 24.108 Atomic orbital electron populations 1.21783 0.94244 0.99933 1.03987 1.21880 0.97386 0.95342 1.01419 1.19384 0.88160 0.93657 0.87991 0.88209 1.45362 1.16794 1.62669 1.16331 1.16082 0.81545 0.78720 0.84235 1.90880 1.51751 1.65335 1.39179 1.45719 1.20446 1.59199 1.12996 1.18943 0.77153 0.92539 0.96629 1.21205 1.01176 1.37227 0.98388 0.92065 1.24940 0.95472 0.95898 0.97704 1.69970 1.05287 1.42270 1.34798 0.86486 0.77344 0.79338 0.83778 1.20125 1.21115 1.20116 1.19425 0.96038 1.05423 0.90633 1.20784 0.93435 0.97816 0.97575 1.21032 0.94603 1.03828 0.97641 1.20915 0.99548 0.97886 0.92049 1.21194 0.92342 1.09088 0.99913 1.18740 0.89471 0.96389 0.86408 1.86152 1.34810 1.88083 1.13128 1.23069 0.98900 1.01063 0.83751 0.94211 0.91639 0.92108 0.91677 0.92401 0.77752 0.78359 0.95835 0.95754 0.92458 0.85380 0.85775 0.85906 0.85456 0.88106 0.92715 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.51 37.15 0.32 -2.04 16 2 C -0.12 -1.71 5.59 -26.73 -0.15 -1.86 16 3 C 0.21 3.20 2.19 -69.08 -0.15 3.05 16 4 H 0.10 1.78 7.13 -51.93 -0.37 1.41 16 5 N -0.75 -11.96 4.95 -59.81 -0.30 -12.25 16 6 C 0.69 14.55 7.13 -86.91 -0.62 13.93 16 7 O -0.59 -14.63 13.48 5.29 0.07 -14.56 16 8 N -0.73 -15.95 5.55 -66.41 -0.37 -16.32 16 9 C 0.27 7.29 5.43 -5.20 -0.03 7.27 16 10 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 11 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 14 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 C -0.11 -1.44 5.07 -104.47 -0.53 -1.97 16 19 C -0.08 -0.84 9.24 -39.60 -0.37 -1.20 16 20 C -0.15 -1.42 10.04 -39.56 -0.40 -1.81 16 21 C -0.09 -0.76 10.04 -39.60 -0.40 -1.15 16 22 C -0.21 -1.98 9.04 -39.44 -0.36 -2.34 16 23 C 0.14 1.61 6.66 -39.22 -0.26 1.35 16 24 O -0.31 -3.65 9.63 -19.41 -0.19 -3.84 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.28 5.64 -51.93 -0.29 0.98 16 28 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.39 5.01 6.21 -40.82 -0.25 4.76 16 32 H 0.38 7.21 8.34 -40.82 -0.34 6.87 16 33 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.13 1.19 6.06 -52.49 -0.32 0.88 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 42 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -33.55 344.97 -8.26 -41.81 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.02 Total: 8.78 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -2.37 Total: 0.83 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.07 Total: -54.32 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.12 Total: -18.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.55 -8.26 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.195 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds