Wall clock time and date at job start Tue Mar 31 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.08999 * 109.46803 * 304.99918 * 3 2 1 5 5 N 1.46496 * 109.47071 * 65.00170 * 3 2 1 6 6 C 1.34777 * 119.99614 * 274.99619 * 5 3 2 7 7 O 1.21588 * 120.00178 * 0.02562 * 6 5 3 8 8 N 1.34784 * 119.99964 * 180.02562 * 6 5 3 9 9 C 1.46493 * 119.99864 * 179.73002 * 8 6 5 10 10 C 1.50698 * 109.47082 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99736 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00453 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99720 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00263 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46760 * 59.99714 * 14 12 10 16 16 H 1.48499 * 109.46931 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47111 * 299.99588 * 14 12 10 18 18 C 1.50703 * 109.47082 * 185.00232 * 3 2 1 19 19 C 1.38170 * 120.02366 * 264.71815 * 18 3 2 20 20 C 1.38246 * 120.05250 * 179.76805 * 19 18 3 21 21 C 1.38291 * 120.11157 * 0.51201 * 20 19 18 22 22 C 1.38120 * 120.05273 * 359.74394 * 21 20 19 23 23 C 1.38711 * 120.03068 * 84.99855 * 18 3 2 24 24 O 1.35896 * 120.05194 * 359.97438 * 23 18 3 25 25 C 1.42908 * 116.99436 * 179.97438 * 24 23 18 26 26 H 1.08996 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46921 * 300.00222 * 1 2 3 28 28 H 1.09000 * 109.47375 * 59.99801 * 1 2 3 29 29 H 1.08997 * 109.47445 * 239.99531 * 2 1 3 30 30 H 1.09004 * 109.47160 * 119.99743 * 2 1 3 31 31 H 0.96996 * 120.00499 * 95.00197 * 5 3 2 32 32 H 0.97000 * 119.99339 * 0.02562 * 8 6 5 33 33 H 1.09007 * 109.47196 * 299.99538 * 9 8 6 34 34 H 1.09006 * 109.47678 * 59.99732 * 9 8 6 35 35 H 0.96993 * 120.00028 * 180.02562 * 13 12 10 36 36 H 1.07993 * 119.97487 * 0.02980 * 19 18 3 37 37 H 1.07996 * 119.94331 * 180.25502 * 20 19 18 38 38 H 1.07999 * 119.96771 * 179.76643 * 21 20 19 39 39 H 1.08005 * 120.02114 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47099 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.47191 * 299.99659 * 25 24 23 42 42 H 1.09001 * 109.46994 * 60.00584 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 8 -0.3415 2.6319 0.4319 8 7 0.0788 3.2675 2.5184 9 6 -1.2421 3.8889 2.6414 10 6 -1.3890 4.4886 4.0161 11 1 -0.5794 4.4139 4.7272 12 6 -2.5571 5.1318 4.3665 13 7 -3.5431 5.2224 3.5008 14 14 -2.7394 5.8746 6.0708 15 1 -1.6878 6.9025 6.2778 16 1 -4.0783 6.5046 6.1955 17 1 -2.5968 4.8075 7.0937 18 6 3.5419 1.4442 -0.1239 19 6 4.3290 1.5205 1.0092 20 6 5.7068 1.5173 0.8965 21 6 6.3008 1.4485 -0.3504 22 6 5.5184 1.3774 -1.4864 23 6 4.1353 1.3751 -1.3758 24 8 3.3632 1.3053 -2.4919 25 6 4.0426 1.2371 -3.7474 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2719 2.1231 1.9978 32 1 0.6986 3.2937 3.2641 33 1 -1.3464 4.6723 1.8907 34 1 -2.0142 3.1347 2.4892 35 1 -4.3647 5.6751 3.7472 36 1 3.8675 1.5783 1.9838 37 1 6.3203 1.5728 1.7836 38 1 7.3774 1.4499 -0.4360 39 1 5.9828 1.3233 -2.4600 40 1 3.3112 1.1860 -4.5539 41 1 4.6613 2.1254 -3.8744 42 1 4.6732 0.3484 -3.7714 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:48 Heat of formation + Delta-G solvation = -69.771715 kcal Electronic energy + Delta-G solvation = -23340.359850 eV Core-core repulsion = 19898.752450 eV Total energy + Delta-G solvation = -3441.607400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 7.34 seconds Orbital eigenvalues (eV) -41.62975 -40.68445 -38.49751 -37.04007 -35.90273 -34.45239 -33.04836 -32.05726 -31.02428 -29.19747 -28.13842 -26.96156 -24.68708 -23.26505 -23.17897 -22.03315 -21.30364 -19.98284 -18.91548 -17.99062 -17.65437 -16.99339 -16.80099 -16.65422 -16.46367 -16.20971 -15.59193 -15.24284 -15.06140 -14.79714 -14.53720 -14.42564 -13.98512 -13.95171 -13.76598 -13.25801 -13.03468 -12.90899 -12.67103 -12.64421 -12.48618 -12.20954 -12.20208 -11.99143 -11.81093 -11.60159 -11.46674 -11.09179 -10.76184 -10.18740 -9.82459 -9.57226 -9.08729 -8.26281 -6.42745 0.33401 0.49340 1.43988 1.48813 1.56683 1.90722 2.32300 2.40874 2.41730 2.80416 3.08433 3.55435 3.57274 3.90118 4.06195 4.15377 4.18722 4.31751 4.39623 4.41402 4.47387 4.57712 4.66934 4.75059 4.77077 4.92997 4.96722 5.05007 5.09929 5.19408 5.30610 5.32890 5.42888 5.46026 5.53713 5.57501 5.69731 5.75239 5.87055 5.88376 6.29011 6.47590 6.69080 7.26602 7.35653 7.79769 8.85929 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003306 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.962056 B = 8466.702282 C = 9071.524717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.219 3.781 4 H 0.063 0.937 5 N -0.729 5.729 6 C 0.693 3.307 7 O -0.634 6.634 8 N -0.725 5.725 9 C 0.289 3.711 10 C -0.555 4.555 11 H 0.083 0.917 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.986 3.014 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.262 1.262 18 C -0.139 4.139 19 C -0.085 4.085 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.207 4.207 23 C 0.120 3.880 24 O -0.338 6.338 25 C 0.019 3.981 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.405 0.595 32 H 0.403 0.597 33 H -0.017 1.017 34 H -0.015 1.015 35 H 0.268 0.732 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.009 -10.747 -7.891 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.113 3.887 4 H 0.081 0.919 5 N -0.388 5.388 6 C 0.393 3.607 7 O -0.516 6.516 8 N -0.379 5.379 9 C 0.165 3.835 10 C -0.593 4.593 11 H 0.101 0.899 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.211 1.211 17 H -0.186 1.186 18 C -0.140 4.140 19 C -0.103 4.103 20 C -0.171 4.171 21 C -0.099 4.099 22 C -0.226 4.226 23 C 0.074 3.926 24 O -0.252 6.252 25 C -0.075 4.075 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.244 0.756 32 H 0.238 0.762 33 H 0.001 0.999 34 H 0.003 0.997 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.893 -10.702 -8.793 26.757 hybrid contribution -0.188 0.586 0.850 1.049 sum 22.705 -10.116 -7.943 26.095 Atomic orbital electron populations 1.21689 0.96327 1.00275 1.01106 1.21811 0.95236 0.95176 1.02855 1.19293 0.90326 0.93289 0.85770 0.91899 1.45118 1.15017 1.61125 1.17528 1.16210 0.82594 0.78570 0.83284 1.90856 1.53506 1.66706 1.40537 1.45304 1.19147 1.59317 1.14162 1.18360 0.78684 0.90414 0.96021 1.21585 1.02093 1.37157 0.98489 0.89862 1.26074 0.94863 0.96127 1.02546 1.70144 1.06065 1.43252 1.37529 0.85193 0.77444 0.78726 0.77740 1.18659 1.21107 1.18613 1.19281 0.94143 1.08482 0.92135 1.20961 0.94321 0.97766 0.97264 1.21367 0.94042 1.02744 0.98996 1.21355 1.01132 0.95927 0.91476 1.21496 0.91341 1.08229 1.01534 1.18962 0.90549 0.96950 0.86150 1.86117 1.36416 1.88252 1.14409 1.23327 0.99531 1.02358 0.82314 0.92169 0.94952 0.94501 0.90277 0.90669 0.75625 0.76245 0.99907 0.99691 0.92276 0.84433 0.83224 0.82831 0.83177 0.87227 0.91719 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.51 71.98 0.61 -4.11 16 2 C -0.11 -3.17 5.59 30.59 0.17 -3.00 16 3 C 0.22 6.69 2.19 44.25 0.10 6.79 16 4 H 0.06 2.40 7.13 -2.39 -0.02 2.39 16 5 N -0.73 -23.45 4.95 -461.41 -2.28 -25.74 16 6 C 0.69 30.33 7.13 179.05 1.28 31.60 16 7 O -0.63 -33.51 13.48 -3.99 -0.05 -33.57 16 8 N -0.73 -32.58 5.55 -482.29 -2.68 -35.26 16 9 C 0.29 16.47 5.43 85.63 0.46 16.93 16 10 C -0.56 -30.94 9.28 25.60 0.24 -30.70 16 11 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 12 C 0.00 0.19 5.46 84.65 0.46 0.65 16 13 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 14 Si 0.99 42.95 29.54 68.60 2.03 44.98 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 C -0.14 -3.41 5.07 -19.77 -0.10 -3.51 16 19 C -0.08 -1.65 9.24 22.26 0.21 -1.44 16 20 C -0.15 -2.31 10.04 22.28 0.22 -2.09 16 21 C -0.08 -1.12 10.04 22.25 0.22 -0.90 16 22 C -0.21 -3.42 9.04 22.36 0.20 -3.22 16 23 C 0.12 2.72 6.66 22.51 0.15 2.87 16 24 O -0.34 -7.98 9.63 -92.38 -0.89 -8.87 16 25 C 0.02 0.26 9.81 113.37 1.11 1.37 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 1.31 5.64 -2.38 -0.01 1.30 16 28 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.41 10.10 6.21 -92.71 -0.58 9.52 16 32 H 0.40 14.94 8.34 -92.71 -0.77 14.17 16 33 H -0.02 -1.10 8.14 -2.38 -0.02 -1.11 16 34 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.14 2.24 6.06 -2.91 -0.02 2.22 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.68 6.30 -2.91 -0.02 1.66 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 42 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 Total: -1.00 -77.26 344.97 1.44 -75.82 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.31 Total: 28.43 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.34 Total: 11.24 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -4.68 Total: -118.03 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.94 Total: -42.44 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -77.26 1.44 -75.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.046 kcal (2) G-P(sol) polarization free energy of solvation -77.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.34 seconds