Wall clock time and date at job start Tue Mar 31 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47347 * 2 1 4 4 H 1.09008 * 109.46644 * 55.00562 * 3 2 1 5 5 N 1.46491 * 109.47396 * 295.00624 * 3 2 1 6 6 C 1.34777 * 120.00397 * 152.45267 * 5 3 2 7 7 O 1.21590 * 119.99433 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00378 * 179.97438 * 6 5 3 9 9 C 1.46501 * 120.00214 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47133 * 180.02562 * 9 8 6 11 11 H 1.07989 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99794 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00123 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00056 * 359.97438 * 12 10 9 15 15 H 1.48510 * 109.46921 * 89.99963 * 14 12 10 16 16 H 1.48498 * 109.47171 * 209.99800 * 14 12 10 17 17 H 1.48497 * 109.47276 * 330.00081 * 14 12 10 18 18 C 1.50703 * 109.47331 * 174.99994 * 3 2 1 19 19 C 1.38167 * 120.02701 * 96.01292 * 18 3 2 20 20 C 1.38241 * 120.05719 * 180.02562 * 19 18 3 21 21 C 1.38290 * 120.10859 * 359.97438 * 20 19 18 22 22 C 1.38118 * 120.06143 * 0.02562 * 21 20 19 23 23 C 1.38713 * 120.03034 * 276.03934 * 18 3 2 24 24 O 1.35903 * 120.05220 * 359.95178 * 23 18 3 25 25 C 1.42900 * 116.99657 * 180.02562 * 24 23 18 26 26 H 1.08998 * 109.47074 * 299.99702 * 1 2 3 27 27 H 1.08995 * 109.47304 * 59.99350 * 1 2 3 28 28 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47040 * 240.00109 * 2 1 3 30 30 H 1.09005 * 109.47487 * 120.00626 * 2 1 3 31 31 H 0.97007 * 119.99982 * 332.44879 * 5 3 2 32 32 H 0.96998 * 120.00217 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.46964 * 300.00422 * 9 8 6 34 34 H 1.09001 * 109.47144 * 59.99995 * 9 8 6 35 35 H 0.96993 * 120.00256 * 180.02562 * 13 12 10 36 36 H 1.08005 * 119.96914 * 0.02562 * 19 18 3 37 37 H 1.07995 * 119.94622 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.96715 * 179.75357 * 21 20 19 39 39 H 1.07998 * 120.03162 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47143 * 59.99746 * 25 24 23 41 41 H 1.08996 * 109.47439 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.47342 * 299.99820 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8420 5 7 1.6524 2.0975 -1.2516 6 6 1.4756 3.4332 -1.2867 7 8 1.6383 4.0945 -0.2794 8 7 1.1195 4.0359 -2.4383 9 6 0.9279 5.4878 -2.4765 10 6 0.5353 5.9063 -3.8700 11 1 0.4387 5.1650 -4.6493 12 6 0.2996 7.2356 -4.1499 13 7 -0.0425 7.6009 -5.3661 14 14 0.4660 8.5178 -2.8016 15 1 1.8605 9.0279 -2.7730 16 1 -0.4667 9.6418 -3.0696 17 1 0.1368 7.9031 -1.4906 18 6 3.5419 1.4443 0.1238 19 6 4.3289 1.5358 -1.0081 20 6 5.7067 1.5370 -0.8953 21 6 6.3008 1.4471 0.3502 22 6 5.5186 1.3554 1.4849 23 6 4.1355 1.3535 1.3743 24 8 3.3636 1.2638 2.4892 25 6 4.0430 1.1739 3.7431 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5230 1.5700 -2.0554 32 1 0.9900 3.5084 -3.2420 33 1 0.1400 5.7688 -1.7776 34 1 1.8567 5.9844 -2.1956 35 1 -0.2080 8.5361 -5.5631 36 1 3.8672 1.6065 -1.9819 37 1 6.3201 1.6090 -1.7812 38 1 7.3775 1.4442 0.4355 39 1 5.9831 1.2849 2.4573 40 1 4.6615 2.0601 3.8855 41 1 3.3118 1.1075 4.5487 42 1 4.6741 0.2852 3.7515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:04 Heat of formation + Delta-G solvation = -48.354535 kcal Electronic energy + Delta-G solvation = -23521.741894 eV Core-core repulsion = 20081.063213 eV Total energy + Delta-G solvation = -3440.678682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -40.51851 -39.22053 -37.47470 -35.98354 -34.10035 -32.47560 -31.77209 -31.07612 -30.11160 -27.87510 -27.33811 -25.81279 -22.45438 -22.33371 -21.98497 -20.66061 -20.12222 -18.29853 -18.06082 -16.49369 -16.30160 -16.16859 -15.81188 -15.35791 -14.69886 -14.59302 -14.45725 -13.96143 -13.83035 -13.74183 -13.62552 -13.02931 -12.91187 -12.48585 -12.30504 -12.22122 -12.14063 -11.85304 -11.42875 -11.28916 -11.16176 -10.93142 -10.91723 -10.83448 -10.68269 -9.91937 -9.50218 -9.39258 -8.90458 -8.77857 -8.70622 -8.15306 -7.94855 -6.16836 -4.18191 1.31316 1.43765 3.20408 3.29220 3.32976 3.39657 3.47709 3.74647 3.89643 4.38463 4.63175 4.76872 4.87554 4.95137 5.00436 5.04764 5.07086 5.10424 5.19120 5.20482 5.31887 5.39272 5.49851 5.64444 5.73133 5.77328 5.88470 5.98219 6.11033 6.24881 6.27586 6.40685 6.54057 6.74225 6.81715 6.94005 7.18108 7.31399 7.33560 7.48364 7.64915 8.33872 8.75565 8.88377 9.30623 9.46222 10.95219 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.003911 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.087110 B = 7157.912396 C = 7532.777835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.213 3.787 4 H 0.101 0.899 5 N -0.748 5.748 6 C 0.696 3.304 7 O -0.598 6.598 8 N -0.724 5.724 9 C 0.239 3.761 10 C -0.540 4.540 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.260 1.260 18 C -0.117 4.117 19 C -0.066 4.066 20 C -0.156 4.156 21 C -0.087 4.087 22 C -0.210 4.210 23 C 0.134 3.866 24 O -0.312 6.312 25 C 0.028 3.972 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.392 0.608 32 H 0.391 0.609 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.215 -18.648 13.478 24.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.107 3.893 4 H 0.119 0.881 5 N -0.404 5.404 6 C 0.395 3.605 7 O -0.477 6.477 8 N -0.376 5.376 9 C 0.116 3.884 10 C -0.578 4.578 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.532 5.532 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.184 1.184 18 C -0.119 4.119 19 C -0.084 4.084 20 C -0.175 4.175 21 C -0.105 4.105 22 C -0.229 4.229 23 C 0.088 3.912 24 O -0.225 6.225 25 C -0.067 4.067 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.225 0.775 32 H 0.224 0.776 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.069 -17.814 14.309 24.583 hybrid contribution 0.375 0.386 -0.080 0.543 sum 9.444 -17.429 14.229 24.401 Atomic orbital electron populations 1.21751 0.95033 1.01333 1.02640 1.21753 0.96497 0.94885 1.02763 1.19426 0.88901 0.93065 0.87949 0.88064 1.45194 1.76234 1.06510 1.12460 1.16116 0.78352 0.81370 0.84624 1.90871 1.59112 1.63757 1.33980 1.45379 1.72416 1.10375 1.09433 1.19331 0.96125 0.75098 0.97819 1.21102 1.48447 0.94422 0.93866 0.90318 1.24773 0.93992 0.98281 0.95552 1.69879 1.46391 1.17487 1.19433 0.86824 0.78566 0.81294 0.83060 1.19892 1.20971 1.18431 1.19719 0.96870 1.04976 0.90365 1.20828 0.93178 0.96496 0.97920 1.21046 0.94840 1.04038 0.97549 1.20881 0.99398 0.98121 0.92131 1.21148 0.92465 1.09589 0.99718 1.18755 0.89447 0.96637 0.86334 1.86092 1.34934 1.88151 1.13297 1.23027 0.98789 1.01015 0.83867 0.92502 0.92254 0.92785 0.91616 0.90502 0.77460 0.77578 0.95997 0.96473 0.92328 0.85454 0.86025 0.86116 0.85713 0.92747 0.88336 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.80 37.15 0.36 -1.17 16 2 C -0.12 -1.27 5.47 -26.73 -0.15 -1.42 16 3 C 0.21 2.98 1.92 -69.09 -0.13 2.84 16 4 H 0.10 1.72 7.08 -51.92 -0.37 1.35 16 5 N -0.75 -11.04 3.22 -59.82 -0.19 -11.24 16 6 C 0.70 14.05 8.55 -86.92 -0.74 13.31 16 7 O -0.60 -14.72 15.96 5.29 0.08 -14.63 16 8 N -0.72 -15.17 5.55 -66.41 -0.37 -15.54 16 9 C 0.24 6.08 4.50 -5.19 -0.02 6.06 16 10 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 11 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 12 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 13 N -0.89 -26.86 13.96 55.43 0.77 -26.08 16 14 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 18 C -0.12 -1.66 5.06 -104.47 -0.53 -2.19 16 19 C -0.07 -0.89 9.32 -39.61 -0.37 -1.25 16 20 C -0.16 -1.89 10.04 -39.56 -0.40 -2.29 16 21 C -0.09 -0.98 10.04 -39.61 -0.40 -1.38 16 22 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 23 C 0.13 1.81 6.66 -39.21 -0.26 1.54 16 24 O -0.31 -3.93 9.65 -19.43 -0.19 -4.12 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 4.58 8.63 -40.82 -0.35 4.23 16 32 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 33 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 34 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.13 1.61 7.23 -52.48 -0.38 1.23 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 40 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -34.57 350.48 -7.99 -42.56 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.27 Total: 7.32 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.44 Total: -0.81 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.21 Total: -52.86 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.10 Total: -18.75 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.57 -7.99 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds