Wall clock time and date at job start Tue Mar 31 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47347 * 2 1 4 4 H 1.09008 * 109.46644 * 55.00562 * 3 2 1 5 5 N 1.46491 * 109.47396 * 295.00624 * 3 2 1 6 6 C 1.34777 * 120.00397 * 152.45267 * 5 3 2 7 7 O 1.21590 * 119.99433 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00378 * 179.97438 * 6 5 3 9 9 C 1.46501 * 120.00214 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47133 * 180.02562 * 9 8 6 11 11 H 1.07989 * 119.99957 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99794 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00123 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00056 * 359.97438 * 12 10 9 15 15 H 1.48510 * 109.46921 * 89.99963 * 14 12 10 16 16 H 1.48498 * 109.47171 * 209.99800 * 14 12 10 17 17 H 1.48497 * 109.47276 * 330.00081 * 14 12 10 18 18 C 1.50703 * 109.47331 * 174.99994 * 3 2 1 19 19 C 1.38167 * 120.02701 * 96.01292 * 18 3 2 20 20 C 1.38241 * 120.05719 * 180.02562 * 19 18 3 21 21 C 1.38290 * 120.10859 * 359.97438 * 20 19 18 22 22 C 1.38118 * 120.06143 * 0.02562 * 21 20 19 23 23 C 1.38713 * 120.03034 * 276.03934 * 18 3 2 24 24 O 1.35903 * 120.05220 * 359.95178 * 23 18 3 25 25 C 1.42900 * 116.99657 * 180.02562 * 24 23 18 26 26 H 1.08998 * 109.47074 * 299.99702 * 1 2 3 27 27 H 1.08995 * 109.47304 * 59.99350 * 1 2 3 28 28 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47040 * 240.00109 * 2 1 3 30 30 H 1.09005 * 109.47487 * 120.00626 * 2 1 3 31 31 H 0.97007 * 119.99982 * 332.44879 * 5 3 2 32 32 H 0.96998 * 120.00217 * 0.02562 * 8 6 5 33 33 H 1.08995 * 109.46964 * 300.00422 * 9 8 6 34 34 H 1.09001 * 109.47144 * 59.99995 * 9 8 6 35 35 H 0.96993 * 120.00256 * 180.02562 * 13 12 10 36 36 H 1.08005 * 119.96914 * 0.02562 * 19 18 3 37 37 H 1.07995 * 119.94622 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.96715 * 179.75357 * 21 20 19 39 39 H 1.07998 * 120.03162 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47143 * 59.99746 * 25 24 23 41 41 H 1.08996 * 109.47439 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.47342 * 299.99820 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8420 5 7 1.6524 2.0975 -1.2516 6 6 1.4756 3.4332 -1.2867 7 8 1.6383 4.0945 -0.2794 8 7 1.1195 4.0359 -2.4383 9 6 0.9279 5.4878 -2.4765 10 6 0.5353 5.9063 -3.8700 11 1 0.4387 5.1650 -4.6493 12 6 0.2996 7.2356 -4.1499 13 7 -0.0425 7.6009 -5.3661 14 14 0.4660 8.5178 -2.8016 15 1 1.8605 9.0279 -2.7730 16 1 -0.4667 9.6418 -3.0696 17 1 0.1368 7.9031 -1.4906 18 6 3.5419 1.4443 0.1238 19 6 4.3289 1.5358 -1.0081 20 6 5.7067 1.5370 -0.8953 21 6 6.3008 1.4471 0.3502 22 6 5.5186 1.3554 1.4849 23 6 4.1355 1.3535 1.3743 24 8 3.3636 1.2638 2.4892 25 6 4.0430 1.1739 3.7431 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.5230 1.5700 -2.0554 32 1 0.9900 3.5084 -3.2420 33 1 0.1400 5.7688 -1.7776 34 1 1.8567 5.9844 -2.1956 35 1 -0.2080 8.5361 -5.5631 36 1 3.8672 1.6065 -1.9819 37 1 6.3201 1.6090 -1.7812 38 1 7.3775 1.4442 0.4355 39 1 5.9831 1.2849 2.4573 40 1 4.6615 2.0601 3.8855 41 1 3.3118 1.1075 4.5487 42 1 4.6741 0.2852 3.7515 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:00 Heat of formation + Delta-G solvation = -71.970710 kcal Electronic energy + Delta-G solvation = -23522.765968 eV Core-core repulsion = 20081.063213 eV Total energy + Delta-G solvation = -3441.702756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.57632 -40.62630 -38.45457 -37.16160 -36.01176 -34.45641 -33.11673 -32.04608 -31.00194 -29.73676 -28.13668 -26.90686 -24.23263 -23.29079 -23.00051 -22.07485 -21.47470 -19.94884 -19.03476 -18.31608 -17.61189 -17.25367 -16.70165 -16.61957 -16.27068 -16.12595 -15.53801 -15.31260 -15.10883 -14.85215 -14.71404 -14.48949 -14.29593 -14.10774 -13.86576 -13.30723 -13.04838 -13.01154 -12.71888 -12.63021 -12.32710 -12.15037 -11.98371 -11.92894 -11.83864 -11.72121 -11.63558 -11.22083 -10.90731 -10.31336 -9.80828 -9.65226 -9.07306 -8.38942 -6.45116 0.37738 0.50460 1.33063 1.35004 1.48788 1.87483 2.25528 2.29404 2.41684 2.81288 2.96786 3.50755 3.69810 3.94470 4.02311 4.15195 4.17246 4.30082 4.40334 4.41046 4.49596 4.57249 4.69617 4.73628 4.76660 4.81784 4.89705 5.03308 5.06641 5.11889 5.18975 5.26623 5.29590 5.40045 5.46024 5.57671 5.59108 5.72362 5.88432 6.01030 6.31071 6.47954 6.56982 7.16257 7.30723 7.72179 8.75811 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017840 B = 0.003911 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.087110 B = 7157.912396 C = 7532.777835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.215 3.785 4 H 0.067 0.933 5 N -0.723 5.723 6 C 0.698 3.302 7 O -0.643 6.643 8 N -0.721 5.721 9 C 0.253 3.747 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.029 3.971 13 N -0.930 5.930 14 Si 0.935 3.065 15 H -0.266 1.266 16 H -0.271 1.271 17 H -0.263 1.263 18 C -0.142 4.142 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.087 4.087 22 C -0.213 4.213 23 C 0.118 3.882 24 O -0.333 6.333 25 C 0.019 3.981 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.410 0.590 32 H 0.405 0.595 33 H 0.008 0.992 34 H 0.006 0.994 35 H 0.272 0.728 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.056 0.944 41 H 0.115 0.885 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.476 -19.850 14.472 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C 0.110 3.890 4 H 0.085 0.915 5 N -0.379 5.379 6 C 0.398 3.602 7 O -0.525 6.525 8 N -0.375 5.375 9 C 0.129 3.871 10 C -0.581 4.581 11 H 0.079 0.921 12 C -0.171 4.171 13 N -0.569 5.569 14 Si 0.759 3.241 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.188 1.188 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.184 4.184 21 C -0.105 4.105 22 C -0.231 4.231 23 C 0.072 3.928 24 O -0.247 6.247 25 C -0.075 4.075 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.240 0.760 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.075 0.925 41 H 0.133 0.867 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.335 -19.089 15.283 26.547 hybrid contribution 0.023 0.664 -0.359 0.755 sum 10.357 -18.425 14.924 25.874 Atomic orbital electron populations 1.21747 0.94764 1.02468 1.01618 1.21695 0.96539 0.92541 1.03957 1.19471 0.89408 0.94300 0.85839 0.91490 1.44958 1.74551 1.04573 1.13844 1.16191 0.77861 0.82727 0.83470 1.90839 1.60955 1.65281 1.35411 1.45076 1.72891 1.08983 1.10527 1.18907 0.94839 0.77553 0.95819 1.21264 1.48049 0.94311 0.94485 0.92090 1.25533 0.93720 1.00343 0.97530 1.69969 1.47453 1.18343 1.21163 0.85899 0.79090 0.79097 0.80048 1.19052 1.19617 1.18792 1.19801 0.96645 1.06631 0.91334 1.20970 0.94066 0.97286 0.97776 1.21342 0.94522 1.03703 0.98837 1.21278 1.00957 0.96719 0.91571 1.21486 0.91830 1.08659 1.01174 1.18981 0.90389 0.96980 0.86452 1.86065 1.36133 1.88146 1.14327 1.23313 0.99640 1.02010 0.82549 0.93807 0.92992 0.90565 0.89713 0.89866 0.75353 0.75982 0.97449 0.97655 0.91832 0.85379 0.84280 0.83205 0.83261 0.92534 0.86680 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.80 71.98 0.71 -2.15 16 2 C -0.11 -2.17 5.47 30.59 0.17 -2.00 16 3 C 0.22 6.01 1.92 44.25 0.09 6.10 16 4 H 0.07 2.36 7.08 -2.38 -0.02 2.34 16 5 N -0.72 -21.14 3.22 -461.42 -1.49 -22.63 16 6 C 0.70 28.38 8.55 179.06 1.53 29.91 16 7 O -0.64 -32.25 15.96 -4.00 -0.06 -32.31 16 8 N -0.72 -30.33 5.55 -482.30 -2.68 -33.00 16 9 C 0.25 12.98 4.50 85.63 0.38 13.36 16 10 C -0.54 -30.57 9.83 25.60 0.25 -30.32 16 11 H 0.06 3.57 7.84 -2.92 -0.02 3.55 16 12 C 0.03 1.67 5.47 84.66 0.46 2.13 16 13 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 14 Si 0.93 45.19 27.47 68.60 1.88 47.07 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.26 -12.81 6.54 99.48 0.65 -12.16 16 18 C -0.14 -3.97 5.06 -19.77 -0.10 -4.07 16 19 C -0.08 -2.16 9.32 22.25 0.21 -1.95 16 20 C -0.17 -3.73 10.04 22.28 0.22 -3.51 16 21 C -0.09 -1.75 10.04 22.25 0.22 -1.53 16 22 C -0.21 -4.54 9.04 22.37 0.20 -4.34 16 23 C 0.12 3.09 6.66 22.51 0.15 3.24 16 24 O -0.33 -8.24 9.65 -92.45 -0.89 -9.13 16 25 C 0.02 0.29 9.81 113.37 1.11 1.40 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 1.07 7.75 -2.39 -0.02 1.05 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.41 9.13 8.63 -92.70 -0.80 8.33 16 32 H 0.40 14.67 8.34 -92.71 -0.77 13.90 16 33 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 34 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.13 3.14 7.23 -2.91 -0.02 3.12 16 37 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.15 2.31 6.30 -2.91 -0.02 2.29 16 40 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 0.78 7.66 -2.39 -0.02 0.77 16 Total: -1.00 -75.17 350.48 2.08 -73.09 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.59 Total: 26.44 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.61 Total: 6.26 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.86 Total: -111.41 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.96 Total: -41.44 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -75.17 2.08 -73.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.121 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds