Wall clock time and date at job start Tue Mar 31 2020 07:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46493 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99811 * 90.00429 * 4 3 2 6 6 C 1.50703 * 109.47289 * 89.99713 * 5 4 3 7 7 C 1.38161 * 120.02675 * 260.00179 * 6 5 4 8 8 C 1.38243 * 120.05456 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.11062 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.05871 * 0.02566 * 9 8 7 11 11 C 1.38705 * 120.02504 * 79.72349 * 6 5 4 12 12 O 1.35905 * 120.05740 * 0.02562 * 11 6 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 4 3 2 14 14 O 1.21586 * 119.99711 * 180.02562 * 13 4 3 15 15 N 1.34774 * 119.99771 * 359.97438 * 13 4 3 16 16 C 1.46498 * 119.99468 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.47032 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99629 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00133 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00117 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46985 * 90.00194 * 21 19 17 23 23 H 1.48500 * 109.47104 * 210.00218 * 21 19 17 24 24 H 1.48504 * 109.47225 * 330.00546 * 21 19 17 25 25 H 1.08996 * 109.47242 * 60.00308 * 1 2 3 26 26 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47602 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46881 * 239.99991 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00180 * 2 1 3 30 30 H 1.09006 * 109.46591 * 59.99524 * 3 2 1 31 31 H 1.09005 * 109.46719 * 300.00285 * 3 2 1 32 32 H 1.09001 * 109.47060 * 210.00163 * 5 4 3 33 33 H 1.09004 * 109.47073 * 329.99652 * 5 4 3 34 34 H 1.08000 * 119.97625 * 359.97306 * 7 6 5 35 35 H 1.08000 * 119.94599 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.97589 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.03024 * 179.97438 * 10 9 8 38 38 H 0.96695 * 114.00134 * 90.00314 * 12 11 6 39 39 H 0.96999 * 120.00329 * 0.02562 * 15 13 4 40 40 H 1.09004 * 109.47312 * 300.00146 * 16 15 13 41 41 H 1.08996 * 109.47199 * 60.00314 * 16 15 13 42 42 H 0.97004 * 119.99927 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.4424 -1.2679 6 6 4.4893 2.8632 -1.7030 7 6 3.6826 3.4456 -2.6615 8 6 3.9123 4.7491 -3.0607 9 6 4.9499 5.4730 -2.5024 10 6 5.7599 4.8949 -1.5445 11 6 5.5271 3.5890 -1.1373 12 8 6.3188 3.0200 -0.1905 13 6 4.1784 1.4426 1.1681 14 8 5.3943 1.4431 1.1685 15 7 3.5040 1.4433 2.3350 16 6 4.2361 1.4430 3.6039 17 6 3.2563 1.4433 4.7490 18 1 2.1946 1.4441 4.5512 19 6 3.7154 1.4424 6.0491 20 7 5.0083 1.4419 6.2899 21 14 2.5010 1.4435 7.4685 22 1 2.1776 0.0438 7.8443 23 1 3.1013 2.1427 8.6330 24 1 1.2586 2.1450 7.0565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1903 0.9285 -1.1371 33 1 3.6492 0.9284 -2.0277 34 1 2.8719 2.8822 -3.0994 35 1 3.2809 5.2025 -3.8105 36 1 5.1271 6.4913 -2.8156 37 1 6.5703 5.4605 -1.1091 38 1 7.0943 2.5658 -0.5474 39 1 2.5340 1.4434 2.3346 40 1 4.8621 0.5525 3.6621 41 1 4.8633 2.3324 3.6618 42 1 5.3313 1.4417 7.2046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787358454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:26 Heat of formation + Delta-G solvation = -48.826484 kcal Electronic energy + Delta-G solvation = -23861.776326 eV Core-core repulsion = 20421.077180 eV Total energy + Delta-G solvation = -3440.699147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.06519 -38.90103 -36.28501 -35.77729 -34.20537 -33.07628 -32.16753 -31.04904 -29.64538 -27.33383 -26.48970 -25.04939 -22.56389 -22.39218 -21.66362 -21.16936 -19.05277 -17.98337 -17.83891 -16.19175 -16.03546 -15.77997 -15.40625 -15.22231 -14.69272 -14.43662 -14.34915 -13.77222 -13.61290 -13.27882 -13.11895 -12.95226 -12.28505 -12.15058 -12.05195 -11.96700 -11.80810 -11.71883 -11.46388 -11.23291 -11.15333 -10.87441 -10.81628 -10.67067 -10.21796 -10.08124 -9.27040 -9.10526 -8.81889 -8.61805 -8.46650 -8.20164 -7.55392 -6.07613 -4.13277 1.29095 1.36430 3.28977 3.31236 3.35573 3.38912 3.82233 4.15612 4.38049 4.53866 4.76665 4.86007 4.92865 5.00307 5.03805 5.13944 5.25536 5.28384 5.33942 5.45786 5.49723 5.57854 5.70131 5.80488 5.88647 5.98187 6.01841 6.03761 6.16021 6.34867 6.38737 6.47232 6.59389 6.88794 6.96212 7.28681 7.63815 7.70236 7.72702 8.00173 8.12258 8.13455 8.87544 9.08827 9.47345 9.67083 11.02687 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.004508 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.557781 B = 6209.503868 C = 7288.907475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.633 5.633 5 C 0.184 3.816 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.142 4.142 9 C -0.105 4.105 10 C -0.157 4.157 11 C 0.135 3.865 12 O -0.455 6.455 13 C 0.692 3.308 14 O -0.568 6.568 15 N -0.733 5.733 16 C 0.270 3.730 17 C -0.539 4.539 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.381 0.619 39 H 0.383 0.617 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 2.406 -20.280 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.010 4.010 4 N -0.371 5.371 5 C 0.060 3.940 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.160 4.160 9 C -0.123 4.123 10 C -0.175 4.175 11 C 0.089 3.911 12 O -0.263 6.263 13 C 0.393 3.607 14 O -0.444 6.444 15 N -0.387 5.387 16 C 0.149 3.851 17 C -0.577 4.577 18 H 0.078 0.922 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.198 1.198 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.237 0.763 39 H 0.216 0.784 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.398 2.617 -19.643 20.298 hybrid contribution -0.830 -0.015 0.545 0.993 sum -5.228 2.601 -19.098 19.971 Atomic orbital electron populations 1.21702 0.95421 1.01767 1.01811 1.21998 0.95812 0.97656 1.02890 1.21456 0.80655 0.96330 1.02535 1.47167 1.05133 1.80135 1.04662 1.19840 0.98087 0.91385 0.84710 1.20818 0.97418 0.98313 0.97214 1.20924 0.98433 0.95138 0.96941 1.21044 0.98781 0.94823 1.01354 1.20994 0.95284 0.99531 0.96533 1.21542 1.01557 0.95904 0.98513 1.18587 0.92712 0.91378 0.88450 1.85273 1.39011 1.72695 1.29359 1.16098 0.85718 0.78620 0.80304 1.90862 1.11071 1.56764 1.85692 1.45818 1.09382 1.77797 1.05700 1.18892 0.91863 0.97354 0.77026 1.21241 0.92942 1.52696 0.90830 0.92195 1.24925 0.95319 0.94912 0.98812 1.69985 1.12527 1.49252 1.20588 0.86456 0.80929 0.78134 0.81609 1.20533 1.21063 1.19830 0.92940 0.92650 0.92342 0.91981 0.91147 0.90832 0.91133 0.89310 0.90750 0.86139 0.86266 0.86168 0.85726 0.76298 0.78373 0.96016 0.95923 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.07 16 2 C -0.14 -1.68 6.26 -26.73 -0.17 -1.85 16 3 C 0.11 1.48 5.17 -4.05 -0.02 1.46 16 4 N -0.63 -10.22 2.46 -180.80 -0.44 -10.66 16 5 C 0.18 2.51 5.38 -5.19 -0.03 2.48 16 6 C -0.14 -1.84 5.47 -104.48 -0.57 -2.41 16 7 C -0.10 -1.07 9.66 -39.61 -0.38 -1.45 16 8 C -0.14 -1.50 10.04 -39.56 -0.40 -1.89 16 9 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 10 C -0.16 -2.08 9.99 -39.43 -0.39 -2.48 16 11 C 0.13 2.05 6.68 -39.22 -0.26 1.78 16 12 O -0.45 -7.89 9.21 -43.69 -0.40 -8.29 16 13 C 0.69 14.85 8.20 -86.92 -0.71 14.14 16 14 O -0.57 -13.86 12.48 -18.96 -0.24 -14.09 16 15 N -0.73 -16.65 5.41 -66.42 -0.36 -17.01 16 16 C 0.27 7.50 5.43 -5.19 -0.03 7.48 16 17 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.76 13.29 55.43 0.74 -26.03 16 21 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.03 6.36 -51.93 -0.33 0.70 16 31 H 0.07 0.76 8.07 -51.93 -0.42 0.35 16 32 H 0.09 1.32 7.14 -51.93 -0.37 0.95 16 33 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.38 5.02 9.06 45.56 0.41 5.43 16 39 H 0.38 7.74 6.05 -40.82 -0.25 7.50 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 350.40 15.07 5.28 5.28 Total: -1.00 -34.39 350.40 -9.41 -43.80 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.55 Total: 9.79 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.41 Total: 0.87 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.07 Total: -53.70 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.64 Total: -22.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.39 -9.41 -43.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.026 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds