Wall clock time and date at job start Tue Mar 31 2020 07:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46493 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99811 * 90.00429 * 4 3 2 6 6 C 1.50703 * 109.47289 * 89.99713 * 5 4 3 7 7 C 1.38161 * 120.02675 * 260.00179 * 6 5 4 8 8 C 1.38243 * 120.05456 * 179.97438 * 7 6 5 9 9 C 1.38283 * 120.11062 * 0.02562 * 8 7 6 10 10 C 1.38128 * 120.05871 * 0.02566 * 9 8 7 11 11 C 1.38705 * 120.02504 * 79.72349 * 6 5 4 12 12 O 1.35905 * 120.05740 * 0.02562 * 11 6 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 4 3 2 14 14 O 1.21586 * 119.99711 * 180.02562 * 13 4 3 15 15 N 1.34774 * 119.99771 * 359.97438 * 13 4 3 16 16 C 1.46498 * 119.99468 * 179.97438 * 15 13 4 17 17 C 1.50702 * 109.47032 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99629 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00133 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00117 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00035 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46985 * 90.00194 * 21 19 17 23 23 H 1.48500 * 109.47104 * 210.00218 * 21 19 17 24 24 H 1.48504 * 109.47225 * 330.00546 * 21 19 17 25 25 H 1.08996 * 109.47242 * 60.00308 * 1 2 3 26 26 H 1.09005 * 109.47319 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47602 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46881 * 239.99991 * 2 1 3 29 29 H 1.08997 * 109.46990 * 120.00180 * 2 1 3 30 30 H 1.09006 * 109.46591 * 59.99524 * 3 2 1 31 31 H 1.09005 * 109.46719 * 300.00285 * 3 2 1 32 32 H 1.09001 * 109.47060 * 210.00163 * 5 4 3 33 33 H 1.09004 * 109.47073 * 329.99652 * 5 4 3 34 34 H 1.08000 * 119.97625 * 359.97306 * 7 6 5 35 35 H 1.08000 * 119.94599 * 179.97438 * 8 7 6 36 36 H 1.08004 * 119.97589 * 180.02562 * 9 8 7 37 37 H 1.07997 * 120.03024 * 179.97438 * 10 9 8 38 38 H 0.96695 * 114.00134 * 90.00314 * 12 11 6 39 39 H 0.96999 * 120.00329 * 0.02562 * 15 13 4 40 40 H 1.09004 * 109.47312 * 300.00146 * 16 15 13 41 41 H 1.08996 * 109.47199 * 60.00314 * 16 15 13 42 42 H 0.97004 * 119.99927 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.4424 -1.2679 6 6 4.4893 2.8632 -1.7030 7 6 3.6826 3.4456 -2.6615 8 6 3.9123 4.7491 -3.0607 9 6 4.9499 5.4730 -2.5024 10 6 5.7599 4.8949 -1.5445 11 6 5.5271 3.5890 -1.1373 12 8 6.3188 3.0200 -0.1905 13 6 4.1784 1.4426 1.1681 14 8 5.3943 1.4431 1.1685 15 7 3.5040 1.4433 2.3350 16 6 4.2361 1.4430 3.6039 17 6 3.2563 1.4433 4.7490 18 1 2.1946 1.4441 4.5512 19 6 3.7154 1.4424 6.0491 20 7 5.0083 1.4419 6.2899 21 14 2.5010 1.4435 7.4685 22 1 2.1776 0.0438 7.8443 23 1 3.1013 2.1427 8.6330 24 1 1.2586 2.1450 7.0565 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1903 0.9285 -1.1371 33 1 3.6492 0.9284 -2.0277 34 1 2.8719 2.8822 -3.0994 35 1 3.2809 5.2025 -3.8105 36 1 5.1271 6.4913 -2.8156 37 1 6.5703 5.4605 -1.1091 38 1 7.0943 2.5658 -0.5474 39 1 2.5340 1.4434 2.3346 40 1 4.8621 0.5525 3.6621 41 1 4.8633 2.3324 3.6618 42 1 5.3313 1.4417 7.2046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787358454.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:23 Heat of formation + Delta-G solvation = -71.443105 kcal Electronic energy + Delta-G solvation = -23862.757057 eV Core-core repulsion = 20421.077180 eV Total energy + Delta-G solvation = -3441.679877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.33179 -40.23174 -37.44706 -37.10891 -36.10694 -34.45590 -33.94483 -32.17923 -30.64262 -29.26384 -27.57441 -26.41184 -24.41977 -23.44261 -22.62629 -22.37358 -20.74837 -19.38988 -19.08380 -17.99707 -17.50819 -16.95874 -16.63150 -16.50283 -16.33120 -15.70771 -15.53104 -15.15979 -14.86959 -14.70142 -14.58029 -14.08113 -13.92677 -13.69448 -13.18738 -13.08975 -13.08733 -12.82883 -12.76920 -12.71371 -12.55153 -12.23633 -12.17693 -12.10449 -11.60676 -11.44946 -11.24582 -10.79407 -10.74700 -9.85056 -9.78427 -9.46312 -9.28574 -8.27289 -6.43874 0.32756 0.42428 1.41736 1.45217 1.56150 1.97878 2.39105 2.47393 2.82196 3.07176 3.33143 3.52465 3.88271 3.93256 4.00874 4.15958 4.22161 4.32611 4.43109 4.57240 4.61043 4.65140 4.73964 4.76302 5.01058 5.03290 5.08319 5.12658 5.21982 5.28873 5.31631 5.44891 5.48901 5.51451 5.57870 5.61734 5.73704 5.85390 5.91498 6.01977 6.23024 6.68425 7.03592 7.26033 7.34631 7.93276 8.85211 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.004508 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.557781 B = 6209.503868 C = 7288.907475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.110 3.890 4 N -0.622 5.622 5 C 0.182 3.818 6 C -0.149 4.149 7 C -0.088 4.088 8 C -0.136 4.136 9 C -0.104 4.104 10 C -0.175 4.175 11 C 0.098 3.902 12 O -0.488 6.488 13 C 0.684 3.316 14 O -0.605 6.605 15 N -0.732 5.732 16 C 0.293 3.707 17 C -0.554 4.554 18 H 0.078 0.922 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.985 3.015 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.257 1.257 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.121 0.879 38 H 0.388 0.612 39 H 0.396 0.604 40 H -0.018 1.018 41 H -0.023 1.023 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 2.951 -22.319 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C -0.013 4.013 4 N -0.358 5.358 5 C 0.059 3.941 6 C -0.151 4.151 7 C -0.107 4.107 8 C -0.154 4.154 9 C -0.122 4.122 10 C -0.194 4.194 11 C 0.053 3.947 12 O -0.298 6.298 13 C 0.385 3.615 14 O -0.484 6.484 15 N -0.387 5.387 16 C 0.170 3.830 17 C -0.592 4.592 18 H 0.096 0.904 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.180 1.180 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.164 0.836 37 H 0.139 0.861 38 H 0.244 0.756 39 H 0.232 0.768 40 H 0.000 1.000 41 H -0.005 1.005 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.173 3.161 -21.761 23.459 hybrid contribution 0.379 -0.141 1.024 1.101 sum -7.795 3.020 -20.737 22.358 Atomic orbital electron populations 1.21672 0.93420 1.02470 1.02640 1.21920 0.97419 0.96269 1.02044 1.21734 0.78254 0.97628 1.03665 1.47152 1.06647 1.78461 1.03586 1.20057 0.97698 0.92174 0.84155 1.20842 0.97805 0.98076 0.98417 1.21297 0.98285 0.95622 0.95484 1.21501 0.98273 0.94454 1.01144 1.21359 0.94770 1.00774 0.95304 1.21664 1.02528 0.95481 0.99734 1.19002 0.93716 0.92538 0.89491 1.85238 1.39912 1.73232 1.31426 1.16349 0.85465 0.78322 0.81363 1.90839 1.12957 1.58079 1.86509 1.45458 1.09762 1.78672 1.04830 1.18254 0.91579 0.93291 0.79892 1.21578 0.93640 1.52885 0.91107 0.90359 1.26063 0.97405 0.93824 1.02185 1.70156 1.15180 1.50011 1.21583 0.85156 0.78341 0.78691 0.77003 1.19384 1.20807 1.18033 0.90680 0.92066 0.92936 0.90600 0.94291 0.92066 0.87542 0.91602 0.86477 0.82668 0.82682 0.83581 0.86135 0.75575 0.76809 1.00022 1.00541 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.14 -2.91 6.26 30.59 0.19 -2.72 16 3 C 0.11 2.60 5.17 86.38 0.45 3.05 16 4 N -0.62 -19.86 2.46 -844.17 -2.07 -21.94 16 5 C 0.18 4.79 5.38 85.63 0.46 5.25 16 6 C -0.15 -3.89 5.47 -19.77 -0.11 -4.00 16 7 C -0.09 -1.64 9.66 22.25 0.22 -1.43 16 8 C -0.14 -2.31 10.04 22.28 0.22 -2.09 16 9 C -0.10 -2.10 10.04 22.25 0.22 -1.88 16 10 C -0.18 -4.73 9.99 22.37 0.22 -4.51 16 11 C 0.10 3.08 6.68 22.51 0.15 3.23 16 12 O -0.49 -18.55 9.21 -69.30 -0.64 -19.19 16 13 C 0.68 30.75 8.20 179.05 1.47 32.22 16 14 O -0.60 -31.73 12.48 19.20 0.24 -31.49 16 15 N -0.73 -34.80 5.41 -482.30 -2.61 -37.41 16 16 C 0.29 17.37 5.43 85.63 0.46 17.84 16 17 C -0.55 -31.91 9.28 25.60 0.24 -31.67 16 18 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 21 Si 0.99 43.82 29.54 68.60 2.03 45.85 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.62 6.36 -2.38 -0.02 1.60 16 31 H 0.11 1.81 8.07 -2.38 -0.02 1.80 16 32 H 0.07 2.04 7.14 -2.39 -0.02 2.02 16 33 H 0.12 2.05 7.93 -2.38 -0.02 2.03 16 34 H 0.16 1.78 8.04 -2.91 -0.02 1.76 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 37 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.39 11.81 9.06 -74.06 -0.67 11.14 16 39 H 0.40 16.38 6.05 -92.71 -0.56 15.82 16 40 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 41 H -0.02 -1.57 8.14 -2.39 -0.02 -1.59 16 42 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -80.27 350.40 2.40 -77.88 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.20 Total: 31.85 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.37 Total: 12.43 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.40 Total: -117.31 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.40 Total: -50.69 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -80.27 2.40 -77.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787358454.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.433 kcal (2) G-P(sol) polarization free energy of solvation -80.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds